| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,008,491 | 2 bp→CG | intergenic (+58/‑174) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,008,491 | 0 | G | C | 99.5% | 1600.4 / NA | 435 | intergenic (+58/‑175) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base C (194/238); total (196/239) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 4,008,492 | 0 | C | G | 100.0% | 1612.1 / NA | 428 | intergenic (+59/‑174) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (195/233); total (195/233) | |||||||||||
Only 100 of 462 total aligned reads displayed.
GGCTACAGCTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑C‑GG‑G‑‑AAA‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑T‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTA > NC_000913/4008403‑4008580 || cagccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCgcacca < 2:6322331/92‑1 (MQ=255) agccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAg < 1:9290859/93‑1 (MQ=255) gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGc > 1:3561769/3‑96 (MQ=255) gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑C‑GG‑GGCAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGc > 2:3006521/3‑96 (MQ=255) ccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCg > 1:5733034/2‑96 (MQ=255) ccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCg > 1:4988502/2‑96 (MQ=255) cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGt > 2:9355629/1‑96 (MQ=255) cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGCGCGCACCAGCGt > 1:11378010/1‑96 (MQ=255) cTGAAGGAATGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGt > 1:6490533/1‑96 (MQ=255) tGAAGGTTTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCC‑GG‑C‑‑AAAGG‑CTGCATTATGGGCAGTGAGCACCAGCGTc > 1:10000040/1‑96 (MQ=255) tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc > 1:10854513/1‑96 (MQ=255) ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGaa > 1:6141413/1‑96 (MQ=255) tttggtgACGGGATGAACGCCGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCTCCAGCGTCTGAAAGACCTTCATccc < 2:3506327/92‑1 (MQ=255) tttggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATccc < 2:4703266/92‑1 (MQ=255) ttggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCg < 1:14114330/93‑1 (MQ=255) ttggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CGGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCg > 2:667754/4‑96 (MQ=255) ctggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCg > 1:8869207/4‑96 (MQ=255) tggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcccta < 1:2979521/94‑3 (MQ=255) tggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa > 1:13187070/3‑96 (MQ=255) gtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGc < 1:7038455/96‑1 (MQ=255) tgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑t < 2:4543996/96‑1 (MQ=255) tgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑C‑GGTG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCATCGTCTGCAAGACCTTCATCCCGAGC‑t > 1:6961764/1‑96 (MQ=255) gACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑T‑g > 1:12337876/1‑96 (MQ=255) cGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑T‑gga > 1:2747296/1‑94 (MQ=255) gggATGAACGAGGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑T‑ggaa > 2:14237029/1‑93 (MQ=255) gggATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑T‑ggaa < 1:9130859/96‑4 (MQ=255) gggATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑T‑ggaa < 2:10508543/96‑4 (MQ=255) gggATGAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑T‑ggaa > 2:2391646/1‑93 (MQ=255) gAACGACGCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGAt > 2:9542865/1‑96 (MQ=255) acgacgCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTg < 1:13336172/96‑1 (MQ=255) cgacgCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTgg > 2:3437713/1‑96 (MQ=255) cgacgCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTga < 1:13792932/96‑2 (MQ=255) gccgCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGt < 2:13414290/94‑1 (MQ=255) gacgCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGt < 1:524372/96‑1 (MQ=255) gacgCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGt > 2:13565387/1‑96 (MQ=255) acgCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTa > 1:6395801/1‑96 (MQ=255) acgCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTa > 2:198522/1‑96 (MQ=255) gCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACt < 2:4288595/96‑1 (MQ=255) gCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACt < 1:1999619/96‑1 (MQ=255) gCCGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCACCCCGGGC‑TGGAAGTGATTGGTACt < 1:4551446/96‑1 (MQ=255) ccGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGATGTGATTGGTACTa > 2:4844077/1‑96 (MQ=255) cGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAGGTGATTGGTACTaa > 1:5445168/1‑96 (MQ=255) cGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTaa < 2:5827692/96‑1 (MQ=255) cGAAATGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCAATATGGGAAGTGCGCACAAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGtaataa > 1:98990/1‑96 (MQ=255) cGAAATGCTGTCGAG‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTaa > 1:5114308/1‑96 (MQ=255) aaaTGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATg > 2:13125727/1‑96 (MQ=255) aaaTGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATg > 1:4869010/1‑96 (MQ=255) aaaTGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATg < 1:11681880/96‑1 (MQ=255) aTGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGcc < 2:11831566/96‑1 (MQ=255) aTGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGcc < 2:1212676/96‑1 (MQ=255) aTGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGcc < 1:7967824/96‑1 (MQ=255) tGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCcg < 1:10492689/96‑1 (MQ=255) tGCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCcg < 2:8611170/96‑1 (MQ=255) ggtGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCcga > 1:7521313/3‑96 (MQ=255) gCTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCcga < 2:784704/96‑1 (MQ=255) cTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCcgac < 1:1902855/96‑1 (MQ=255) cTGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCcgac > 1:6755947/1‑96 (MQ=255) cTGTCGAT‑GC‑AGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCcgac < 1:2393129/96‑1 (MQ=255) tGTCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGGGATTGGGACTAATGCcgacg > 2:4132733/1‑96 (MQ=255) gTCGATGGG‑G‑GG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCcgacga > 1:4671930/1‑96 (MQ=255) tCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCgacgac < 2:10162357/96‑1 (MQ=255) tCGAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCgacgac > 1:4409288/1‑96 (MQ=255) gAT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGAcgc > 2:9173504/1‑96 (MQ=255) aT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATTGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGGGC‑TGGAAGTGATTGGTACTAATGCCGACGAcgcg > 2:12291817/1‑96 (MQ=255) aT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGAcgcg > 2:8359228/1‑96 (MQ=255) aT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAAACCTTCATCCCGAGC‑TGGAAGGGATTGGTACTAATGGCGGCGAcgcg > 1:3960574/1‑96 (MQ=255) aT‑GG‑CGGG‑G‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGCCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGAcgcg > 2:7091006/1‑96 (MQ=255) aT‑GG‑CGGG‑G‑‑AAA‑GTCTGCATTATGGGCAGTGCGCCCCAGCGTCTGAACGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGAcgcg < 2:12519757/96‑1 (MQ=255) ggg‑g‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGcc > 2:7465530/2‑96 (MQ=255) ggg‑g‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGcc > 1:3224311/2‑96 (MQ=255) g‑g‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCTTCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGATGCCGc > 2:12783958/1‑96 (MQ=255) g‑g‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGc > 2:3275642/1‑96 (MQ=255) aaagg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAt > 1:3852446/5‑96 (MQ=255) aaagg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAt > 2:10913418/5‑96 (MQ=255) aagg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGCTTGGTACTAATGCCGACGACGCGGTGCCGCAtt < 2:14066289/93‑1 (MQ=255) aagg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAtt > 2:2782277/4‑96 (MQ=255) agg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTa < 2:5166531/94‑1 (MQ=255) agg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTa > 2:9738272/3‑96 (MQ=255) g‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 2:6141413/96‑1 (MQ=255) tcTGCATTATGGGCAGTGCGCACCAGCGACTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 1:12248005/95‑1 (MQ=255) cTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCt > 1:9627120/1‑96 (MQ=255) cTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCt > 1:7229577/1‑96 (MQ=255) tGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTg < 2:11461145/96‑1 (MQ=255) tGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTg < 2:6507775/96‑1 (MQ=255) gCATTATGGGCAGTGCGCCCCAGCGTCTGAAAGACCTTCATCCCGTGCGG‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 1:4245751/96‑1 (MQ=255) gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 2:9200765/96‑1 (MQ=255) cATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCg < 1:12681184/96‑1 (MQ=255) aTTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGt < 2:5005219/96‑1 (MQ=255) aTTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGt < 2:5482252/96‑1 (MQ=255) ttATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTa < 1:11990528/96‑1 (MQ=255) aTGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATTTGCGTaaa < 2:12971223/96‑1 (MQ=255) aTGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaaa > 2:11164189/1‑96 (MQ=255) aTGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaaa < 1:1425508/96‑1 (MQ=255) tGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAAc > 1:8222077/1‑96 (MQ=255) gggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGCCGACGCGGTGCGGCATTATGTGCGTaagtg > 1:10237775/1‑93 (MQ=255) gggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAAct < 2:3907276/96‑1 (MQ=255) gggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAAct > 2:1678771/1‑96 (MQ=255) ggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAActc > 2:682961/1‑96 (MQ=255) ggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAActc < 2:9621549/96‑1 (MQ=255) gCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑TGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAActct > 2:760669/1‑96 (MQ=255) || GGCTACAGCTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GG‑C‑GG‑G‑‑AAA‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGC‑T‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCTA > NC_000913/4008403‑4008580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |