Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,500,309 Δ1 bp coding (333/363 nt) b3372 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,500,3080C.99.7% 1555.4 / ‑4.0 335coding (332/363 nt)b3372hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base . (183/151);  total (184/151)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 365 total aligned reads displayed.

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATC  >  NC_000913/3500216‑3500400
                                                                                            |                                                                                            
 gATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTccgcg                                                                                             >  2:7199421/1‑92 (MQ=255)
  aTGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTccgcgg                                                                                            >  1:1567087/1‑91 (MQ=255)
   tGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTccgcggc                                                                                           >  2:580065/1‑90 (MQ=255)
     aaCATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGccc                                                                                        <  2:4180742/93‑1 (MQ=255)
     aaCATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGccc                                                                                        <  2:1995674/93‑1 (MQ=255)
     aaCATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGccc                                                                                        >  1:2617758/1‑93 (MQ=255)
      aCATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATTTGTCAAAAGAGAGGAACGCGGGTTTTACGGTGATTTCCGCGGCCCa                                                                                       >  2:2961167/1‑93 (MQ=255)
        atatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCAcg                                                                                     >  1:5116693/1‑93 (MQ=255)
         tatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCAcgc                                                                                    >  2:6239163/1‑93 (MQ=255)
         tatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCAcgc                                                                                    <  1:5452340/93‑1 (MQ=255)
         tatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCAcgc                                                                                    >  1:5852761/1‑93 (MQ=255)
         tatGCGTCGCGAAAGCCTCAACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCAcgc                                                                                    <  1:7208558/93‑1 (MQ=255)
          atGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCAcgcg                                                                                   >  2:6664328/1‑93 (MQ=255)
           tGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCgg                                                                                  <  2:823931/93‑1 (MQ=255)
             cGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGc                                                                                <  2:7698229/93‑1 (MQ=255)
             cGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGc                                                                                >  2:8453134/1‑93 (MQ=255)
              gTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCt                                                                               <  1:1430992/93‑1 (MQ=255)
               gcgcgAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTa                                                                              <  2:2474014/92‑1 (MQ=255)
                 gcgAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTAtc                                                                            <  2:554272/93‑1 (MQ=255)
                  cgAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTAtct                                                                           <  1:8272018/93‑1 (MQ=255)
                   gAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTAtctc                                                                          >  1:7459123/1‑93 (MQ=255)
                   gAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTAtctc                                                                          >  2:1508072/1‑93 (MQ=255)
                   gAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTAtctc                                                                          >  1:1266667/1‑93 (MQ=255)
                    aaaGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCa                                                                         <  1:5590949/93‑1 (MQ=255)
                      aGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACg                                                                       >  1:4192235/1‑93 (MQ=255)
                       gCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGc                                                                      >  1:2303627/1‑93 (MQ=255)
                       gCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGc                                                                      >  2:7309724/1‑93 (MQ=255)
                          tCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCAc                                                                   >  1:3748460/1‑93 (MQ=255)
                          tCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCAc                                                                   >  1:8811800/1‑93 (MQ=255)
                          tCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCAc                                                                   >  1:1383811/1‑93 (MQ=255)
                          tCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCAc                                                                   >  2:1882819/1‑93 (MQ=255)
                           cGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCAcc                                                                  <  1:3533888/93‑1 (MQ=255)
                            gACATGATCAAGCTGGCGATGGATATGGGAAAAGAGATGAACGCGGGGTATAAGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGACACCt                                                                 >  1:3781384/1‑93 (MQ=255)
                              cATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGCCTATCTCACACCACCTat                                                               >  1:6568916/1‑92 (MQ=255)
                               aTGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAAt                                                              <  2:3935580/93‑1 (MQ=255)
                                tGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATg                                                             >  1:7607884/1‑93 (MQ=255)
                                tGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATg                                                             >  1:4514291/1‑93 (MQ=255)
                                 gATCAAGCTGGCGATGGATATGCCAAAAGAGATGAACGCGGGTTATACGCTGATTTCGGCGGCCCACGCGGGCTATCTCAAGCCACCTAATGt                                                            >  2:3080865/1‑93 (MQ=255)
                                  aTCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGtt                                                           >  2:3503881/1‑93 (MQ=255)
                                    cAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTAt                                                         >  1:1924166/1‑93 (MQ=255)
                                    cAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTAt                                                         >  1:8317423/1‑93 (MQ=255)
                                    cAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTAt                                                         >  2:6328548/1‑93 (MQ=255)
                                    cAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTAt                                                         <  2:5648006/93‑1 (MQ=255)
                                     aaGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATc                                                        >  2:8714504/1‑93 (MQ=255)
                                     aaGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATc                                                        <  1:6443804/93‑1 (MQ=255)
                                      aGCTGGCGATGGATATGACAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCt                                                       <  1:1714894/93‑1 (MQ=255)
                                         tGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTggg                                                    >  2:333427/1‑93 (MQ=255)
                                         tGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTggg                                                    <  1:4568515/93‑1 (MQ=255)
                                         aggCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTggg                                                    <  1:7699127/92‑1 (MQ=255)
                                          ggCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTgggg                                                   <  1:6898468/93‑1 (MQ=255)
                                           gctaTGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGa                                                  <  1:3001065/90‑1 (MQ=255)
                                            cGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGAc                                                 <  2:491428/93‑1 (MQ=255)
                                            cGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGAc                                                 <  2:7488348/93‑1 (MQ=255)
                                             gATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACg                                                >  1:6193159/1‑93 (MQ=255)
                                             gATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACg                                                >  1:501995/1‑93 (MQ=255)
                                              aTGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACgg                                               <  2:4619606/93‑1 (MQ=255)
                                                 gATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTg                                            >  1:2487669/1‑93 (MQ=255)
                                                 gATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTg                                            <  2:2776110/93‑1 (MQ=255)
                                                      ggCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCaga                                       <  1:7976851/93‑1 (MQ=255)
                                                        cAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAgaga                                     <  2:2167326/93‑1 (MQ=255)
                                                         aaaaGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGaa                                    <  2:1738471/93‑1 (MQ=255)
                                                         aaaaGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGaa                                    >  2:8037519/1‑93 (MQ=255)
                                                         aaaaGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGaa                                    <  2:6054368/93‑1 (MQ=255)
                                                          aaaGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAc                                   >  1:7381029/1‑93 (MQ=255)
                                                          aaaGAGATGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAc                                   >  1:6644078/1‑93 (MQ=255)
                                                             gagaTGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTa                                <  2:3987707/93‑1 (MQ=255)
                                                              agaTGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTaa                               >  1:8466675/1‑93 (MQ=255)
                                                              agaTGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTaa                               <  1:6840084/93‑1 (MQ=255)
                                                                aTGAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGc                             <  2:5030232/93‑1 (MQ=255)
                                                                  gAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGa                           >  1:3916062/1‑93 (MQ=255)
                                                                  gAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGa                           >  2:6185259/1‑93 (MQ=255)
                                                                  gAACGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGa                           >  1:6306189/1‑93 (MQ=255)
                                                                   aaCGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGaa                          >  2:5299271/1‑93 (MQ=255)
                                                                    aCGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAAc                         <  1:2167909/93‑1 (MQ=255)
                                                                    aCGCGGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAAc                         <  1:4428833/93‑1 (MQ=255)
                                                                       cgGGTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgt                      <  1:498310/93‑1 (MQ=255)
                                                                        gggTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgtg                     <  1:1659985/93‑1 (MQ=255)
                                                                        gggTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgtg                     >  2:8317950/1‑93 (MQ=255)
                                                                         ggTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgtgt                    <  1:8750179/93‑1 (MQ=255)
                                                                          gTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgtgtg                   <  1:6113794/93‑1 (MQ=255)
                                                                          gTTATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgtgtg                   <  2:6794781/93‑1 (MQ=255)
                                                                           ttATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGa                  >  2:7902865/1‑93 (MQ=255)
                                                                           ttATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGa                  <  2:7774126/93‑1 (MQ=255)
                                                                           ttATACGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGa                  >  2:4760132/1‑93 (MQ=255)
                                                                            tataCGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAg                 <  2:4718695/93‑1 (MQ=255)
                                                                            tataCGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAg                 <  1:3137315/93‑1 (MQ=255)
                                                                             ataCGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGt                <  2:433054/93‑1 (MQ=255)
                                                                             ataCGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGt                >  2:2395464/1‑93 (MQ=255)
                                                                               aCGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAc              <  1:5707976/93‑1 (MQ=255)
                                                                               aCGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAc              >  1:2369869/1‑93 (MQ=255)
                                                                               aCGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAc              <  2:4528955/93‑1 (MQ=255)
                                                                                cGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcg             <  1:1054980/93‑1 (MQ=255)
                                                                                cGCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcg             <  2:8770577/93‑1 (MQ=255)
                                                                                 gCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcgc            >  2:6977040/1‑93 (MQ=255)
                                                                                 gCTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcgc            <  2:592955/93‑1 (MQ=255)
                                                                                  cTGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcgcg           <  1:4076397/93‑1 (MQ=255)
                                                                                   tGATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCgg          >  1:2914727/1‑93 (MQ=255)
                                                                                    gATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGa         >  2:660774/1‑93 (MQ=255)
                                                                                    gATTTCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGa         <  1:269000/93‑1 (MQ=255)
                                                                                      tttCCGCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGaaa       >  1:3388886/1‑93 (MQ=255)
                                                                                            |                                                                                            
CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATC  >  NC_000913/3500216‑3500400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: