Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,142,917 T→C D225G (GAC→GGC)  rne ← RNase E

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,142,9170TC98.7% 754.5 / ‑1.8 226D225G (GAC→GGC) rneRNase E
Reads supporting (aligned to +/- strand):  ref base T (1/2);  new base C (135/88);  total (136/90)
Fisher's exact test for biased strand distribution p-value = 5.65e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.19e-01

Only 100 of 236 total aligned reads displayed.

TTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCTTTT  >  NC_000913/1142827‑1143006
                                                                                          |                                                                                         
ttGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGccc                                                                                         <  1:4356851/93‑1 (MQ=255)
 tgctgcTGAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCt                                                                                        <  2:2588616/93‑1 (MQ=255)
  gctgctGAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTg                                                                                       >  1:8435809/1‑93 (MQ=255)
  gctgctGAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTg                                                                                       >  1:3669365/1‑93 (MQ=255)
   ctgctgAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGa                                                                                      <  2:2061556/93‑1 (MQ=255)
    tgctgAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTTGAGCACTTTCGGGTTATCGATAAGGATCTCGCCGATGACCTGAc                                                                                     >  2:270997/1‑93 (MQ=255)
    tgctgAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGAc                                                                                     <  2:4672444/93‑1 (MQ=255)
    tgctgAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGAc                                                                                     >  1:2242314/1‑93 (MQ=255)
    tgctgAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGAc                                                                                     >  2:7059269/1‑93 (MQ=255)
       tgAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACgta                                                                                  >  1:5861690/1‑93 (MQ=255)
        gAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACgtaa                                                                                 >  1:8231093/1‑93 (MQ=255)
        gAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACgtaa                                                                                 >  2:2926841/1‑93 (MQ=255)
         aaaTCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACgtaag                                                                                <  2:2230073/93‑1 (MQ=255)
         aaaTCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACgtaag                                                                                >  1:5504327/1‑93 (MQ=255)
          aaTCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACgtaagt                                                                               >  2:1280437/1‑93 (MQ=255)
            tCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACgtaagtaa                                                                             <  1:7898342/93‑1 (MQ=255)
            tCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACgtaagtaa                                                                             <  2:3632768/93‑1 (MQ=255)
              cGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATc                                                                           >  2:5065543/1‑93 (MQ=255)
                   gACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGa                                                                      >  2:5557341/1‑93 (MQ=255)
                   gACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGCTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGa                                                                      >  1:8648490/1‑93 (MQ=255)
                    aCCTAATGGAGGGATAGGCTGGCTTGCCAGTTCGGGGACTTTCGGGTTTTCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGaa                                                                     <  2:8057335/93‑1 (MQ=255)
                    aCCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGaa                                                                     <  2:1008224/93‑1 (MQ=255)
                    aCCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGaa                                                                     >  2:7702778/1‑93 (MQ=255)
                      cTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATg                                                                   >  2:4610831/1‑93 (MQ=255)
                       tAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATgc                                                                  <  2:7166695/93‑1 (MQ=255)
                       tAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATgc                                                                  <  2:6675242/93‑1 (MQ=255)
                       tAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATgc                                                                  >  2:6223273/1‑93 (MQ=255)
                        aaTGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATgcg                                                                 >  2:1948462/1‑93 (MQ=255)
                        aaTGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATgcg                                                                 >  2:353196/1‑93 (MQ=255)
                         aTGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATgcgc                                                                >  1:4632887/1‑93 (MQ=255)
                          tGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGcgcg                                                               <  2:1791053/93‑1 (MQ=255)
                             aGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAAc                                                            <  1:2332381/93‑1 (MQ=255)
                              gCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACg                                                           >  2:7947371/1‑93 (MQ=255)
                                gATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGAt                                                         >  1:5811515/1‑93 (MQ=255)
                                gATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGAt                                                         >  1:3935744/1‑93 (MQ=255)
                                gATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGAt                                                         >  2:4361170/1‑93 (MQ=255)
                                 atatGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGAtt                                                        >  1:2855786/1‑93 (MQ=255)
                                  tatGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTa                                                       >  2:6936952/1‑93 (MQ=255)
                                   atGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTAc                                                      <  1:6817723/93‑1 (MQ=255)
                                   atGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTAc                                                      >  1:6441980/1‑93 (MQ=255)
                                    tGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATTCGCGCACGAttgct                                                     >  1:947969/1‑90 (MQ=255)
                                    tGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACg                                                     >  1:4897982/1‑93 (MQ=255)
                                     gCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGt                                                    <  1:813479/93‑1 (MQ=255)
                                     gCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGt                                                    >  2:3356886/1‑93 (MQ=255)
                                     gCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGt                                                    <  1:1245413/93‑1 (MQ=255)
                                      cTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGtt                                                   <  1:183650/93‑1 (MQ=255)
                                       tGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTg                                                  >  2:2834734/1‑93 (MQ=255)
                                       tGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTg                                                  >  2:1585992/1‑93 (MQ=255)
                                         aCGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGct                                                >  1:1137495/1‑93 (MQ=255)
                                          cGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGctc                                               >  2:7961496/1‑93 (MQ=255)
                                          cGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGctc                                               >  1:7172915/1‑93 (MQ=255)
                                             gCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTcc                                            >  1:1073365/1‑93 (MQ=255)
                                             gCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTcc                                            <  1:3653545/93‑1 (MQ=255)
                                               cAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCtg                                          <  1:6033939/93‑1 (MQ=255)
                                               cAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCtg                                          >  1:2545976/1‑93 (MQ=255)
                                               cAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCtg                                          >  2:5853904/1‑93 (MQ=255)
                                               cAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCtg                                          <  1:4301141/93‑1 (MQ=255)
                                                 gTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCtgat                                        >  1:848696/1‑93 (MQ=255)
                                                   tCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCtgatga                                      >  1:4477010/1‑93 (MQ=255)
                                                    cGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGaa                                     >  2:1739933/1‑93 (MQ=255)
                                                     gAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAAt                                    <  2:8575850/93‑1 (MQ=255)
                                                      aGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATc                                   <  1:2099253/93‑1 (MQ=255)
                                                       gCACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCa                                  >  1:4007643/1‑93 (MQ=255)
                                                        cACTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAg                                 >  1:7722605/1‑93 (MQ=255)
                                                          cTTTCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGa                               >  2:3161761/1‑93 (MQ=255)
                                                            ttCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAAc                             <  2:1540655/93‑1 (MQ=255)
                                                            ttCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAAc                             <  1:5342275/93‑1 (MQ=255)
                                                            ttCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAAc                             <  2:5511580/93‑1 (MQ=255)
                                                             tCGGGTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACg                            <  2:8022091/93‑1 (MQ=255)
                                                               gggTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACggg                          <  2:7415444/93‑1 (MQ=255)
                                                                ggTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACgggg                         >  2:2949951/1‑93 (MQ=255)
                                                                ggTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACgggg                         >  1:7549232/1‑93 (MQ=255)
                                                                ggTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACgggg                         >  2:3104703/1‑93 (MQ=255)
                                                                 gTTATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGc                        <  2:3868748/93‑1 (MQ=255)
                                                                   tATCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCg                      <  1:5586879/93‑1 (MQ=255)
                                                                    aTCGATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCgg                     >  1:6257873/1‑93 (MQ=255)
                                                                       gATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGggcg                  >  1:1712872/1‑93 (MQ=255)
                                                                       gATAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGggcg                  <  2:5937997/93‑1 (MQ=255)
                                                                        aTAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGggcgg                 >  1:8396767/1‑93 (MQ=255)
                                                                         tAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGggcggc                >  2:5206041/1‑93 (MQ=255)
                                                                         tAAGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGggcggc                >  1:2775594/1‑93 (MQ=255)
                                                                          aaGGATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCGCTCCTGATGAATCAGGAACGGGGCCGGGCGGCt               <  1:5725004/93‑1 (MQ=255)
                                                                            ggATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCttt             >  2:6495014/1‑93 (MQ=255)
                                                                            ggATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCttt             >  1:4783410/1‑93 (MQ=255)
                                                                             gATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTc            <  2:5167146/93‑1 (MQ=255)
                                                                             gATTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTc            <  1:1529527/93‑1 (MQ=255)
                                                                              aTTTCGCCGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCa           <  1:6987637/93‑1 (MQ=255)
                                                                                    ccGATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCt     >  2:4138293/1‑93 (MQ=255)
                                                                                      gATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCttt   <  2:8256854/93‑1 (MQ=255)
                                                                                      gATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCttt   >  1:3041041/1‑93 (MQ=255)
                                                                                      gATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCttt   <  2:5616989/93‑1 (MQ=255)
                                                                                      gATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCttt   >  1:3435306/1‑93 (MQ=255)
                                                                                      gATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCttt   >  1:5246809/1‑93 (MQ=255)
                                                                                      gATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCttt   >  2:7618867/1‑93 (MQ=255)
                                                                                      gATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCttt   >  2:7764466/1‑93 (MQ=255)
                                                                                      gATGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCttt   >  1:8666466/1‑93 (MQ=255)
                                                                                       aTGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCtttt  >  1:8518945/1‑93 (MQ=255)
                                                                                       aTGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCtttt  >  2:7332169/1‑93 (MQ=255)
                                                                                       aTGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCtttt  >  1:3357335/1‑93 (MQ=255)
                                                                                       aTGCCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCtttt  <  1:7117583/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCTTTT  >  NC_000913/1142827‑1143006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: