Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,636,465 T→C intergenic (‑296/+14) b1551 ← / ← cspI hypothetical protein/cold shock‑like protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,636,4650TC99.6% 969.1 / ‑4.8 276intergenic (‑296/+14)b1551/cspIhypothetical protein/cold shock‑like protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (137/138);  total (137/139)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.84e-01

Only 100 of 281 total aligned reads displayed.

CCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTC  >  NC_000913/1636375‑1636553
                                                                                          |                                                                                        
 cccGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAat                                                                                       >  1:1707328/1‑93 (MQ=255)
 cccGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAat                                                                                       >  1:814001/1‑93 (MQ=255)
   cGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAatat                                                                                     >  2:3092857/1‑93 (MQ=255)
   cGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAatat                                                                                     <  2:1313420/93‑1 (MQ=255)
    gAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATAtt                                                                                    <  2:2629833/93‑1 (MQ=255)
    gAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATAtt                                                                                    >  2:6212246/1‑93 (MQ=255)
    gAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATAtt                                                                                    <  1:8213370/93‑1 (MQ=255)
    gAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATAtt                                                                                    <  2:4568235/93‑1 (MQ=255)
      aaGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGTAATATTGt                                                                                  <  1:6486607/93‑1 (MQ=255)
       aGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTc                                                                                 <  2:3630374/93‑1 (MQ=255)
       aGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTc                                                                                 <  1:987605/93‑1 (MQ=255)
        ggATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCt                                                                                <  2:6019055/93‑1 (MQ=255)
         gATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTa                                                                               >  1:523318/1‑93 (MQ=255)
          aTTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTAc                                                                              <  2:4853226/93‑1 (MQ=255)
           ttCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTAcc                                                                             <  1:845144/93‑1 (MQ=255)
           ttCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTAcc                                                                             >  1:5040222/1‑93 (MQ=255)
              aTGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCa                                                                          >  2:6871515/1‑93 (MQ=255)
              aTGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCa                                                                          >  1:3691425/1‑93 (MQ=255)
                gTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCaaa                                                                        <  2:7095858/93‑1 (MQ=255)
                gTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCaaa                                                                        <  1:8783115/93‑1 (MQ=255)
                gTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCaaa                                                                        <  1:6574514/93‑1 (MQ=255)
                 tCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACCGGCATCTAAAGTGAATATGGTTTGCAATCTTGTCTACCTCAAAg                                                                       >  1:5199593/1‑93 (MQ=255)
                   aGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAgcg                                                                     >  1:5512040/1‑93 (MQ=255)
                   aGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAgcg                                                                     >  2:4414995/1‑93 (MQ=255)
                    gAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAgcgc                                                                    >  1:3458330/1‑93 (MQ=255)
                    gAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAgcgc                                                                    >  1:3835180/1‑93 (MQ=255)
                       aCATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCAc                                                                 >  1:2884311/1‑93 (MQ=255)
                       aCATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCAc                                                                 >  2:7507835/1‑93 (MQ=255)
                         aTCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTa                                                               <  2:5708353/93‑1 (MQ=255)
                         aTCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTa                                                               <  1:1451273/93‑1 (MQ=255)
                           cAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACa                                                             <  2:8168566/93‑1 (MQ=255)
                            aaaaGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACAt                                                            <  1:1005058/93‑1 (MQ=255)
                            aaaaGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACAt                                                            <  1:2298683/93‑1 (MQ=255)
                            aaaaGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACAt                                                            >  1:5282385/1‑93 (MQ=255)
                            aaaaGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACAt                                                            <  2:5185650/93‑1 (MQ=255)
                             aaaGATAATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATg                                                           >  1:4078364/1‑93 (MQ=255)
                              aaGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGa                                                          <  1:7894031/93‑1 (MQ=255)
                                gatgatGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAAc                                                        >  2:5079801/1‑93 (MQ=255)
                                 atgatgTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACa                                                       <  2:4398707/93‑1 (MQ=255)
                                  tgatgTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAg                                                      >  1:75276/1‑93 (MQ=255)
                                   gatgTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGc                                                     <  1:4634968/93‑1 (MQ=255)
                                   gatgTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGc                                                     <  2:467830/93‑1 (MQ=255)
                                      gTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGc                                                  >  1:2427952/1‑93 (MQ=255)
                                       ttCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCa                                                 <  2:6687258/93‑1 (MQ=255)
                                        tCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAg                                                >  2:1539745/1‑93 (MQ=255)
                                        tCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAg                                                <  1:6016062/93‑1 (MQ=255)
                                        tCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAg                                                >  2:4483232/1‑93 (MQ=255)
                                        tCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAg                                                <  2:5432972/93‑1 (MQ=255)
                                         cTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAgg                                               <  2:2194323/93‑1 (MQ=255)
                                           ataCTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGAc                                             >  2:1156040/1‑93 (MQ=255)
                                            taCTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGAcc                                            <  1:7144097/93‑1 (MQ=255)
                                            taCTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGAcc                                            <  1:1120453/93‑1 (MQ=255)
                                             aCTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCt                                           <  1:6752316/93‑1 (MQ=255)
                                              cTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCtt                                          >  1:5159799/1‑93 (MQ=255)
                                               tGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCttt                                         <  2:5756557/93‑1 (MQ=255)
                                                gggAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTa                                        <  2:7156657/93‑1 (MQ=255)
                                                aggAACCAATGCAACACGGGCACCTAAAGTGAATATGGTTTTCAATATTTTCAACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTa                                        <  2:6346531/92‑1 (MQ=255)
                                                  gAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAgg                                      >  2:7333880/1‑93 (MQ=255)
                                                  gAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAgg                                      >  2:7621523/1‑93 (MQ=255)
                                                    aCCATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTc                                    <  2:3359152/93‑1 (MQ=255)
                                                      cATGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCg                                  >  2:3966388/1‑93 (MQ=255)
                                                       aTGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGt                                 <  1:959065/93‑1 (MQ=255)
                                                       aTGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGt                                 >  1:6318348/1‑93 (MQ=255)
                                                       aTGACAACACGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGt                                 <  1:8070282/93‑1 (MQ=255)
                                                         gACAACACGGGCATCTAAAGTGAATATTGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTtc                               <  1:893288/93‑1 (MQ=255)
                                                          acaacaCGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTtct                              <  2:2327402/93‑1 (MQ=255)
                                                             acgcGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGGCCTTTAGGTCCGTTCTCaa                           <  2:2234661/90‑1 (MQ=255)
                                                             acacGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCaa                           <  1:3122783/93‑1 (MQ=255)
                                                              cacGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAAt                          <  2:7919906/93‑1 (MQ=255)
                                                              cacGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAAt                          <  1:662691/93‑1 (MQ=255)
                                                               acGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATa                         >  1:6141059/1‑93 (MQ=255)
                                                                cGGGCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATAc                        <  1:2811504/93‑1 (MQ=255)
                                                                  ggCATCTAAAGTGAATATGGTTTGCAATATTTGCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTACGTCCGTTCTCAATACCa                      >  1:8350170/1‑93 (MQ=255)
                                                                  ggCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCa                      <  1:3576754/93‑1 (MQ=255)
                                                                  ggCATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCa                      <  1:455658/93‑1 (MQ=255)
                                                                    cATCTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCaaa                    <  1:5943069/93‑1 (MQ=255)
                                                                       cTAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTc                 <  1:8749920/93‑1 (MQ=255)
                                                                        tAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCa                <  2:8113106/93‑1 (MQ=255)
                                                                        tAAAGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCa                >  1:1978522/1‑93 (MQ=255)
                                                                         aaaGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCaa               >  2:3691671/1‑93 (MQ=255)
                                                                          aaGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAAc              <  2:847499/93‑1 (MQ=255)
                                                                          aaGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAAc              <  2:8608641/93‑1 (MQ=255)
                                                                          aaGTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAAc              >  2:417591/1‑93 (MQ=255)
                                                                            gTGAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACtt            <  1:3491509/93‑1 (MQ=255)
                                                                              gAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTcc          >  2:6591059/1‑93 (MQ=255)
                                                                              gAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTcc          <  1:4915583/93‑1 (MQ=255)
                                                                              gAATATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTcc          <  2:7988277/93‑1 (MQ=255)
                                                                               aaTATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCt         >  2:5340936/1‑93 (MQ=255)
                                                                               aaTATGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCt         >  2:7888614/1‑93 (MQ=255)
                                                                                atatGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTg        >  1:580190/1‑93 (MQ=255)
                                                                                atatGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTg        >  1:2907595/1‑93 (MQ=255)
                                                                                 tatGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTgt       >  1:2159524/1‑92 (MQ=255)
                                                                                 tatGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGa       >  2:2884586/1‑93 (MQ=255)
                                                                                 tatGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGa       >  1:1312721/1‑93 (MQ=255)
                                                                                 tatGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGa       <  2:1782232/93‑1 (MQ=255)
                                                                                  atGGTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGAt      <  1:735884/93‑1 (MQ=255)
                                                                                    ggTTTGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATtc    >  1:6258143/1‑93 (MQ=255)
                                                                                      tttGCAATTTTTTCTACCTCAAAGCCCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATtctc  <  2:7865574/93‑1 (MQ=255)
                                                                                      tttGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATtctc  >  2:8252826/1‑93 (MQ=255)
                                                                                      tttGCAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATtctc  <  2:1890150/93‑1 (MQ=255)
                                                                                          |                                                                                        
CCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTC  >  NC_000913/1636375‑1636553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: