Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 6,610 G→A R450R (CGC→CGT yaaJ ← inner membrane transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009136,6100GA99.7% 1152.3 / NA 328R450R (CGC→CGTyaaJinner membrane transport protein
Reads supporting (aligned to +/- strand):  ref base G (1/0);  major base A (174/152);  minor base C (0/1);  total (175/153)
Fisher's exact test for biased strand distribution p-value = 4.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 370 total aligned reads displayed.

TAGTTGTGATTACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGC  >  NC_000913/6520‑6702
                                                                                          |                                                                                            
 aGTTGTGATTACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGacgc                                                                                           >  1:7125321/1‑93 (MQ=255)
  gTTGTGATTACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCa                                                                                          >  1:619792/1‑93 (MQ=255)
  gTTGTGATTACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCa                                                                                          >  1:7878155/1‑93 (MQ=255)
    tgtgATTACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACg                                                                                        >  1:3258109/1‑93 (MQ=255)
      tgATTACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGcc                                                                                      <  2:1421477/93‑1 (MQ=255)
       gATTACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCccgccg                                                                                     >  1:6717778/1‑93 (MQ=255)
        aTTACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGa                                                                                    <  2:7161895/93‑1 (MQ=255)
        aTTACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGa                                                                                    <  1:3342784/93‑1 (MQ=255)
          tACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATACCGCAATGGATCAAACACCGGACGCACGCCGAGt                                                                                  >  1:2751237/1‑93 (MQ=255)
           aCTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGtt                                                                                 >  1:1014014/1‑93 (MQ=255)
           aCTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGtt                                                                                 >  2:4068291/1‑93 (MQ=255)
            cTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGttt                                                                                >  1:4144521/1‑93 (MQ=255)
            cTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGttt                                                                                <  1:5636815/93‑1 (MQ=255)
            cTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGttt                                                                                <  1:4491290/93‑1 (MQ=255)
            cTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGttt                                                                                >  1:8264425/1‑93 (MQ=255)
              ccTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTAc                                                                              >  2:1275402/1‑93 (MQ=255)
              ccTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTAc                                                                              >  2:4297808/1‑93 (MQ=255)
              ccTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTAc                                                                              <  1:521028/93‑1 (MQ=255)
               cTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACg                                                                             >  1:3138494/1‑93 (MQ=255)
               cTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACg                                                                             >  1:3842652/1‑93 (MQ=255)
                tGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGc                                                                            <  1:6844628/93‑1 (MQ=255)
                tGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGc                                                                            >  1:8214126/1‑93 (MQ=255)
                  cGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTg                                                                          <  2:3685155/93‑1 (MQ=255)
                  cGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTg                                                                          <  1:4303614/93‑1 (MQ=255)
                   gAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTgg                                                                         <  1:4817782/93‑1 (MQ=255)
                   gAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTgg                                                                         <  2:5166589/93‑1 (MQ=255)
                   gAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTgg                                                                         >  2:8722687/1‑93 (MQ=255)
                   aaaaCACCATCCCACGCGCCCGGAGAAAGCTGGCGACGGATATCCGGATAACGCAATGGATCAAACCCCGGACGCACGCCGAGTTTACGCTgg                                                                         <  1:3175960/92‑1 (MQ=255)
                    aaaCATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGc                                                                        >  2:5398143/1‑93 (MQ=255)
                     aaCATCCCCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACCCCGGACGCACGCCGAGTTTACGCTGGCg                                                                       <  2:1580642/93‑1 (MQ=255)
                     aaCATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCg                                                                       >  1:722697/1‑93 (MQ=255)
                       catcatCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTa                                                                     <  1:2337074/93‑1 (MQ=255)
                        atcatcCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAg                                                                    >  2:3127379/1‑93 (MQ=255)
                        atcatcCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAg                                                                    >  2:3537540/1‑93 (MQ=255)
                         tcatcCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGa                                                                   <  1:4721843/93‑1 (MQ=255)
                         tcatcCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGa                                                                   >  2:3927911/1‑93 (MQ=255)
                         tcatcCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGa                                                                   >  1:1796684/1‑93 (MQ=255)
                         tcatcCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGa                                                                   >  2:8205504/1‑93 (MQ=255)
                         tcatcCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGa                                                                   <  2:8467879/93‑1 (MQ=255)
                          catcCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGAt                                                                  >  1:8025438/1‑93 (MQ=255)
                          caccccGCGCGTCGGAAGAAGGCGGGCGACCGATATCCGAATAACGCAATGGATAAACCCCCGGACGCACGCCGAGTTTACGCTGGCGTAGAt                                                                  <  2:7869511/90‑1 (MQ=255)
                            tcCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATaa                                                                >  1:7290069/1‑93 (MQ=255)
                              ccACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATc                                                              >  1:1239398/1‑93 (MQ=255)
                                ccgcgTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCAc                                                            <  2:1854272/92‑1 (MQ=255)
                                  gcgTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTg                                                          >  1:6139345/1‑93 (MQ=255)
                                   cgTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTgg                                                         <  1:7651326/93‑1 (MQ=255)
                                   cgTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTgg                                                         <  1:5420240/93‑1 (MQ=255)
                                     tCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCa                                                       <  1:2484112/93‑1 (MQ=255)
                                     tCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCa                                                       >  1:954973/1‑93 (MQ=255)
                                       cGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAAt                                                     <  2:7469190/93‑1 (MQ=255)
                                       cGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAAt                                                     >  1:3590717/1‑93 (MQ=255)
                                        ggAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACTCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATg                                                    >  1:2633283/1‑93 (MQ=255)
                                        ggAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCGGGCGTATATAATCACTGGCAATg                                                    >  2:2950191/1‑93 (MQ=255)
                                          agaAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGt                                                  <  2:7245540/93‑1 (MQ=255)
                                           gaAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTa                                                 >  2:6417574/1‑93 (MQ=255)
                                           gaAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTa                                                 >  1:870426/1‑93 (MQ=255)
                                           gaAAGCTGGCGACCGATATCCGAATAACGCAATGGATCAAACCCGGGCCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTa                                                 <  2:1724101/93‑1 (MQ=255)
                                              aGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGa                                              <  2:2878806/93‑1 (MQ=255)
                                               gttGGCGACCGATACCCGGATAACGAAATGGATCAACCCCCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGaa                                             <  2:5024502/91‑1 (MQ=255)
                                               gCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGaa                                             >  2:6822737/1‑93 (MQ=255)
                                                cTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAAc                                            >  2:5954561/1‑93 (MQ=255)
                                                  ggCGCCCGATATCCGGATAACGCAATGGATCAAACCCCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACca                                          <  2:2168462/93‑1 (MQ=255)
                                                  ggCGACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACca                                          <  1:1742254/93‑1 (MQ=255)
                                                     gACCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAg                                       >  1:658110/1‑93 (MQ=255)
                                                      aCCGCTATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAgg                                      >  2:7031245/1‑93 (MQ=255)
                                                      aCCGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAgg                                      <  2:672721/93‑1 (MQ=255)
                                                       ccGATATCCGGATAACGCACTGGAACAAACACCGGACGCACGCCGAGTTTACGCGGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGc                                     <  1:797057/93‑1 (MQ=255)
                                                       ccGATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGc                                     <  1:5977695/93‑1 (MQ=255)
                                                         gATATCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCga                                   <  1:7374704/93‑1 (MQ=255)
                                                          atatCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCgag                                  >  2:7545056/1‑93 (MQ=255)
                                                           tatCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCgaga                                 >  1:5591551/1‑93 (MQ=255)
                                                            atCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACAACAGGCGagag                                >  2:2047649/1‑93 (MQ=255)
                                                             tCCGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGc                               >  1:1086328/1‑93 (MQ=255)
                                                              ccGGATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCa                              <  2:2288202/93‑1 (MQ=255)
                                                                 gATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTa                           >  1:1984252/1‑93 (MQ=255)
                                                                 gATAACGCAATGGATCAAACACCGGACGCACGCCGAGTTTAAGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGCCGAGAGCAGTa                           >  1:5285856/1‑93 (MQ=255)
                                                                 gATAACGCAATAGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTa                           >  2:5641092/1‑93 (MQ=255)
                                                                  aTAACGAAATGGATCAAACACCGGCCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTaa                          <  2:7679973/93‑1 (MQ=255)
                                                                       gCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATgg                     <  2:4886690/93‑1 (MQ=255)
                                                                       gCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATgg                     >  1:1398473/1‑93 (MQ=255)
                                                                       gCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATgg                     >  1:369640/1‑93 (MQ=255)
                                                                       gCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATgg                     <  2:5325997/93‑1 (MQ=255)
                                                                       gCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATgg                     >  1:7409443/1‑93 (MQ=255)
                                                                       gCAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATgg                     <  1:4912485/93‑1 (MQ=255)
                                                                        cAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGc                    <  2:495212/93‑1 (MQ=255)
                                                                        cAATGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGc                    >  1:3991132/1‑93 (MQ=255)
                                                                         aaTGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCg                   <  2:577691/93‑1 (MQ=255)
                                                                         aaTGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCg                   <  2:7285863/93‑1 (MQ=255)
                                                                          aTGGATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCgg                  >  1:1807900/1‑93 (MQ=255)
                                                                            ggATCAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTc                <  1:7023720/93‑1 (MQ=255)
                                                                                cAAACACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAAt            <  1:3661293/93‑1 (MQ=255)
                                                                                  aaCACCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTg          >  2:1149494/1‑93 (MQ=255)
                                                                                  aaCACCGGACGCACGCCGAGGTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTg          >  1:4087257/1‑93 (MQ=255)
                                                                                     acCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTa       >  2:2653829/1‑93 (MQ=255)
                                                                                     acCGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTa       >  1:6427014/1‑93 (MQ=255)
                                                                                      ccGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTaa      >  1:3050419/1‑93 (MQ=255)
                                                                                      ccGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTaa      >  2:6480453/1‑93 (MQ=255)
                                                                                       cGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAAt     <  2:4222999/93‑1 (MQ=255)
                                                                                       cGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAAt     <  1:1612435/93‑1 (MQ=255)
                                                                                       cGGACGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAAt     <  2:4772369/93‑1 (MQ=255)
                                                                                          |                                                                                            
TAGTTGTGATTACTCCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGC  >  NC_000913/6520‑6702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: