Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,744,399 T→C intergenic (‑194/+55) rpsP ← / ← ffh 30S ribosomal subunit protein S16/FFh

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,744,3990TC99.7% 1018.1 / ‑5.3 300intergenic (‑194/+55)rpsP/ffh30S ribosomal subunit protein S16/FFh
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (134/165);  total (135/165)
Fisher's exact test for biased strand distribution p-value = 4.50e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01

Only 100 of 323 total aligned reads displayed.

TCAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCT  >  NC_000913/2744309‑2744488
                                                                                          |                                                                                         
tCAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCAc                                                                                         >  2:2306640/1‑93 (MQ=255)
tCAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCAc                                                                                         <  1:8268693/93‑1 (MQ=255)
tCAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCAc                                                                                         >  2:5747842/1‑93 (MQ=255)
  aaCAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGt                                                                                       <  1:675849/93‑1 (MQ=255)
    cAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGa                                                                                     <  2:5898781/93‑1 (MQ=255)
    cAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGa                                                                                     >  2:6696916/1‑93 (MQ=255)
     aGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGTTGCCGGAGTGCGCGCGGTCACCGGAGCGTACACGCAGCACGTGAg                                                                                    >  2:3080700/1‑93 (MQ=255)
      gTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAgg                                                                                   >  1:2061477/1‑93 (MQ=255)
       ttGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGa                                                                                  <  2:8814334/93‑1 (MQ=255)
       ttGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGa                                                                                  >  2:6167669/1‑93 (MQ=255)
        tGCTAGCTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGAt                                                                                 <  2:5846113/93‑1 (MQ=255)
        tGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGAt                                                                                 >  2:5666477/1‑93 (MQ=255)
          cTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCGCGTGAGGATGa                                                                               <  2:2594769/93‑1 (MQ=255)
          cTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGa                                                                               <  2:4550367/93‑1 (MQ=255)
          cTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGa                                                                               >  1:1871975/1‑93 (MQ=255)
          cTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGa                                                                               <  2:7812207/93‑1 (MQ=255)
           tAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGag                                                                              >  1:4634485/1‑92 (MQ=255)
           tAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGAc                                                                              >  2:3281844/1‑93 (MQ=255)
            aaCTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGGCGGAGAGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGTCg                                                                             >  1:7267664/1‑93 (MQ=38)
            aaCTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACg                                                                             >  2:3672110/1‑93 (MQ=255)
             aCTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGa                                                                            >  1:1982503/1‑93 (MQ=255)
             aCTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGa                                                                            <  2:8596252/93‑1 (MQ=255)
              ctctGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAg                                                                           >  1:1456089/1‑93 (MQ=255)
               tctGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGc                                                                          >  1:6161595/1‑93 (MQ=255)
               tctGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGc                                                                          >  2:8129800/1‑93 (MQ=255)
               tctGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGc                                                                          >  1:2200296/1‑93 (MQ=255)
                 tgctgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGcac                                                                        >  2:645763/1‑93 (MQ=255)
                 tgctgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGAGCAGTCACTGGAGCGTACACGCAGCACGTGAGGATGACGAGcac                                                                        >  1:8470916/1‑93 (MQ=255)
                  gctgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGcaca                                                                       <  1:2506/93‑1 (MQ=255)
                    tgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATc                                                                     >  1:4192529/1‑93 (MQ=255)
                    tgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATc                                                                     >  2:5028929/1‑93 (MQ=255)
                     gTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATcc                                                                    <  1:4340468/93‑1 (MQ=255)
                       aaaaGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTAACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCg                                                                  <  1:1350577/93‑1 (MQ=255)
                        aaaGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCgg                                                                 <  2:434351/93‑1 (MQ=255)
                        aaaGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCgg                                                                 <  1:7642448/93‑1 (MQ=255)
                        aaaGGCCGTCGGCGGAGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCgg                                                                 >  2:2062091/1‑93 (MQ=255)
                         aaGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGt                                                                <  1:1017228/93‑1 (MQ=255)
                         aaGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGt                                                                <  2:1423392/93‑1 (MQ=255)
                          aGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTg                                                               <  1:6501123/93‑1 (MQ=255)
                               gTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCaaa                                                          >  2:3973010/1‑93 (MQ=255)
                               gTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCaaa                                                          <  1:6629365/93‑1 (MQ=255)
                               gTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCaaa                                                          >  1:6327827/1‑93 (MQ=255)
                               gTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCaaa                                                          >  1:3767972/1‑93 (MQ=255)
                               gTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCaaa                                                          >  2:7087652/1‑93 (MQ=255)
                               gTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGGCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCaaa                                                          >  1:6391012/1‑93 (MQ=255)
                                tCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCaaaa                                                         <  1:292122/93‑1 (MQ=255)
                                  ggcggTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATg                                                       <  2:2732589/93‑1 (MQ=255)
                                   gcggTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATgg                                                      >  1:3124570/1‑93 (MQ=255)
                                        gCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAAc                                                 >  2:6321524/1‑93 (MQ=255)
                                          aGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACaa                                               >  1:351241/1‑93 (MQ=255)
                                          aGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACaa                                               <  1:2809028/93‑1 (MQ=255)
                                           gCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAg                                              >  1:7928855/1‑93 (MQ=255)
                                           gCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAg                                              >  2:473974/1‑93 (MQ=255)
                                           gCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAg                                              >  1:4064482/1‑93 (MQ=255)
                                           gCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAAAAAg                                              >  2:1964325/1‑93 (MQ=255)
                                            ccAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGc                                             <  1:1645521/93‑1 (MQ=255)
                                            ccAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGc                                             <  2:5465806/93‑1 (MQ=255)
                                            ccAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGc                                             <  1:5076808/93‑1 (MQ=255)
                                            ccAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGc                                             <  2:1216147/93‑1 (MQ=255)
                                             cAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGcc                                            >  2:6817843/1‑93 (MQ=255)
                                              aGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCa                                           <  2:5551072/93‑1 (MQ=255)
                                               gTTTGGTGCCGGAGTGCGCGCAGTCACCTGAGCGTACACGCAGCACGTTAGGATGACGAGCACATCCCTGTGCCAAAATGGCAAATAAGACAg                                          >  2:8049467/1‑93 (MQ=37)
                                               gTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAg                                          >  2:8196765/1‑93 (MQ=255)
                                               gTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAg                                          >  1:2670970/1‑93 (MQ=255)
                                               gTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAg                                          <  1:8716297/93‑1 (MQ=255)
                                                tttGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAgg                                         >  2:518194/1‑93 (MQ=255)
                                                 ttGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGc                                        <  2:7152884/93‑1 (MQ=255)
                                                 ttGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGc                                        <  2:3143986/93‑1 (MQ=255)
                                                  tGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGcc                                       <  2:6952128/93‑1 (MQ=255)
                                                  tGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGcc                                       >  2:1071639/1‑93 (MQ=255)
                                                    gTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGa                                     <  1:4447360/93‑1 (MQ=255)
                                                      gCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGAtt                                   <  1:5611293/93‑1 (MQ=255)
                                                       ccGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCATGCCGATTa                                  <  1:5847270/93‑1 (MQ=255)
                                                       ccGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTa                                  <  2:7950471/93‑1 (MQ=255)
                                                         ggAGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGc                                <  2:8389237/93‑1 (MQ=255)
                                                           aGTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGa                              <  2:4884245/93‑1 (MQ=255)
                                                            gTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGAc                             <  2:221506/93‑1 (MQ=255)
                                                            gTGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGAc                             >  1:4958506/1‑93 (MQ=255)
                                                             tGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGAcc                            <  2:6056945/93‑1 (MQ=255)
                                                             tGCGCGCAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGAcc                            >  1:4814652/1‑93 (MQ=255)
                                                              gcgcgcAGCCCCGGGAGCGTACGCGCAGCACGTGAGGATGACGAGCCCATCCGGGTGCAAAAATGGCAAACAAGCCAGGCCGATTAGCGACCa                           <  2:4679890/93‑1 (MQ=255)
                                                                gcgcAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAgg                         >  2:1674839/1‑93 (MQ=255)
                                                                 cgcAGTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAggg                        <  1:1100653/93‑1 (MQ=255)
                                                                     gTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGc                    >  2:2418674/1‑93 (MQ=255)
                                                                     gTCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGc                    >  2:848811/1‑93 (MQ=255)
                                                                      tCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGcc                   <  2:7505553/93‑1 (MQ=255)
                                                                      tCACCGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGcc                   <  2:3549196/93‑1 (MQ=255)
                                                                        ccgggAGCGTACACGCAGCAGGGGAGAATGCCGAGCACATCCGGGTGCAAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTg                 <  2:1586790/90‑1 (MQ=255)
                                                                         ccGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTgg                <  1:2281754/93‑1 (MQ=255)
                                                                          cGGAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTggg               <  1:5280574/93‑1 (MQ=255)
                                                                           ggAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTgggg              >  1:8072308/1‑93 (MQ=255)
                                                                           ggAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTgggg              <  2:2962072/93‑1 (MQ=255)
                                                                            gAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTggggg             >  1:3267534/1‑93 (MQ=255)
                                                                            gAGCGTACACGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTggggg             <  1:7391413/93‑1 (MQ=255)
                                                                               cGTACACGCAGCACGTGAGAATGACGAGCACATCCCGGTGCCAAAATGGCAACCAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGcat          <  1:7733115/93‑1 (MQ=255)
                                                                               cGTACACGAAGCACGTGAGGATGCCGAGCACATCCCGGTGCCAAAAGGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGcat          <  2:5121607/93‑1 (MQ=255)
                                                                                  acgcGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGcatcat       >  1:7064220/4‑93 (MQ=255)
                                                                                    acGCAGCACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATAc     <  2:3427494/93‑1 (MQ=255)
                                                                                      gcagcaCGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATAccc   >  2:8310974/1‑93 (MQ=255)
                                                                                      gcagcaCGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATAccc   <  2:5393995/93‑1 (MQ=255)
                                                                                          |                                                                                         
TCAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCT  >  NC_000913/2744309‑2744488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: