Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,996,557 T→C K112K (AAA→AAG b2863 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,996,5570TC99.2% 1284.3 / ‑2.3 373K112K (AAA→AAGb2863hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (1/2);  new base C (200/170);  total (201/172)
Fisher's exact test for biased strand distribution p-value = 5.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 389 total aligned reads displayed.

AAACTATCCCTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTATTTCATT  >  NC_000913/2996465‑2996646
                                                                                            |                                                                                         
  aCTATCCCTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGctt                                                                                         >  1:4690706/1‑93 (MQ=255)
   cTATCCCTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTtc                                                                                        <  1:729700/93‑1 (MQ=255)
   cTATCCCTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTtc                                                                                        <  1:4768581/93‑1 (MQ=255)
    tATCCCTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTtct                                                                                       >  1:6318127/1‑93 (MQ=255)
    tATCCCTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTtct                                                                                       <  2:2236318/93‑1 (MQ=255)
     aTCCCTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAAGGTTCACCAGGGCTtctc                                                                                      >  2:2056171/1‑93 (MQ=255)
     aTCCCTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTtctc                                                                                      >  1:7392245/1‑93 (MQ=255)
     aTCCCTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTtctc                                                                                      <  2:3813051/93‑1 (MQ=255)
       cccTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCg                                                                                    >  1:1084196/1‑93 (MQ=255)
        ccTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGt                                                                                   >  1:94726/1‑93 (MQ=255)
         cTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTc                                                                                  <  2:334870/93‑1 (MQ=255)
          tCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCa                                                                                 >  2:6080296/1‑93 (MQ=255)
            aaCCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAAc                                                                               >  2:4067401/1‑93 (MQ=255)
             aCCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACg                                                                              >  1:2471239/1‑93 (MQ=255)
                aGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTa                                                                           >  1:543477/1‑93 (MQ=255)
                 gACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCCACGTTac                                                                          >  1:894775/1‑92 (MQ=255)
                 gACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTaa                                                                          >  1:552236/1‑93 (MQ=255)
                  aCAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAAc                                                                         <  1:2334746/93‑1 (MQ=255)
                  aCAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAAc                                                                         >  1:3531087/1‑93 (MQ=255)
                  aCAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAAc                                                                         <  2:3236965/93‑1 (MQ=255)
                  aCAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAAc                                                                         <  1:5670279/93‑1 (MQ=255)
                   cAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACt                                                                        <  2:8282511/93‑1 (MQ=255)
                   cAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACt                                                                        <  2:1131333/93‑1 (MQ=255)
                     gCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACttt                                                                      <  2:1739652/93‑1 (MQ=255)
                     gCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACttt                                                                      >  1:4961068/1‑93 (MQ=255)
                       atcatAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCg                                                                    >  2:8401350/1‑93 (MQ=255)
                        tcatAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCgt                                                                   <  2:7906375/93‑1 (MQ=255)
                        tcatAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCgt                                                                   <  2:5406190/93‑1 (MQ=255)
                         catAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCgtg                                                                  <  2:4237251/93‑1 (MQ=255)
                          atAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCgtgt                                                                 <  2:4355227/93‑1 (MQ=255)
                          atAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCgtgt                                                                 >  2:7058375/1‑93 (MQ=255)
                          atAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCgtgt                                                                 <  2:3489665/93‑1 (MQ=255)
                          atAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCgtgt                                                                 <  1:847787/93‑1 (MQ=255)
                           tAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCgtgtg                                                                <  2:7781699/93‑1 (MQ=255)
                           tAGTGGGTTTCTGCCGCCGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCgtgtg                                                                >  1:4160080/1‑93 (MQ=255)
                            aGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCgtgtgt                                                               <  2:8656912/93‑1 (MQ=255)
                              tGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGttt                                                             >  2:5850320/1‑93 (MQ=255)
                                 gTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCt                                                          >  2:5649277/1‑93 (MQ=255)
                                  tttCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTg                                                         <  1:2633084/93‑1 (MQ=255)
                                  tttCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTg                                                         <  1:782154/93‑1 (MQ=255)
                                  tttCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTg                                                         >  2:7587641/1‑93 (MQ=255)
                                   ttCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGt                                                        >  1:6423671/1‑93 (MQ=255)
                                   ttCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGt                                                        >  1:4543405/1‑93 (MQ=255)
                                   ttCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGt                                                        <  1:8260589/93‑1 (MQ=255)
                                     cTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTa                                                      <  2:1101818/93‑1 (MQ=255)
                                      tGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTaa                                                     <  2:6625090/93‑1 (MQ=255)
                                       gCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAAt                                                    <  2:4914293/93‑1 (MQ=255)
                                       gCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAAt                                                    >  2:2549721/1‑93 (MQ=255)
                                         cGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGt                                                  >  2:771055/1‑93 (MQ=255)
                                         cGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGt                                                  >  2:7178835/1‑93 (MQ=255)
                                         cGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGt                                                  >  1:6147816/1‑93 (MQ=255)
                                          gCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGtt                                                 >  1:1356787/1‑93 (MQ=255)
                                          gCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGtt                                                 <  2:1477408/93‑1 (MQ=255)
                                           cTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTa                                                >  2:1938870/1‑93 (MQ=255)
                                           cTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTa                                                <  1:1865281/93‑1 (MQ=255)
                                           cTGGTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTa                                                <  1:2275963/93‑1 (MQ=255)
                                            tGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAg                                               >  2:5276158/1‑93 (MQ=255)
                                            tGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAg                                               <  2:6367606/93‑1 (MQ=255)
                                             gTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGc                                              <  1:7044067/93‑1 (MQ=255)
                                              ttttGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCa                                             >  1:8644946/1‑93 (MQ=255)
                                                ttGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAAt                                           >  1:1168976/1‑93 (MQ=255)
                                                   tCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCt                                        >  1:2930393/1‑93 (MQ=255)
                                                     aTCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTg                                      >  2:738898/1‑93 (MQ=255)
                                                        ttCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAAt                                   >  1:1740229/1‑93 (MQ=255)
                                                          cGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAAttt                                 >  1:7990017/1‑93 (MQ=255)
                                                           gAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTc                                <  2:6232074/93‑1 (MQ=255)
                                                           gAAAGGAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTCGCAATCCTTGAATTTc                                >  1:404046/1‑93 (MQ=255)
                                                               gTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCt                            >  1:6547218/1‑93 (MQ=255)
                                                               gTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCt                            <  1:7238286/93‑1 (MQ=255)
                                                               gTAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCt                            <  1:1486478/93‑1 (MQ=255)
                                                                tAGAAGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCtt                           <  2:3114834/93‑1 (MQ=255)
                                                                   aaGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTgg                        <  1:3222416/93‑1 (MQ=255)
                                                                   aaGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTgg                        >  1:2170893/1‑93 (MQ=255)
                                                                    aGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGt                       >  2:3740285/1‑93 (MQ=255)
                                                                    aGCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGt                       >  2:4783312/1‑93 (MQ=255)
                                                                     gCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGta                      >  2:5571557/1‑93 (MQ=255)
                                                                     gCAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGta                      >  1:4385569/1‑93 (MQ=255)
                                                                     gCAACAATAAACGTTTCCCAGGGTTTGTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGta                      <  2:2799132/93‑1 (MQ=255)
                                                                      cAAGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGtat                     >  1:3374205/1‑93 (MQ=255)
                                                                       aaGACTAAACGTGCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGtata                    <  1:5227236/93‑1 (MQ=255)
                                                                       aaGAATAAACGTTCCCCAGGGCTTCTCCGTCCACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGtata                    >  2:4644315/1‑93 (MQ=255)
                                                                       aaGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGtata                    >  1:7519429/1‑93 (MQ=255)
                                                                       aaGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGtata                    <  1:8066441/93‑1 (MQ=255)
                                                                        aGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAg                   >  2:3993828/1‑93 (MQ=255)
                                                                        aGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAg                   >  2:2935178/1‑93 (MQ=255)
                                                                        aGAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAg                   >  2:7207788/1‑93 (MQ=255)
                                                                         gAATAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGt                  >  1:3915183/1‑93 (MQ=255)
                                                                         aaaTAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGt                  <  1:7358076/92‑1 (MQ=255)
                                                                           aTAAACGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTCATGTTAGCAATCCTTGAATTTCGTCTTTGGTGTAGtcg                >  1:994527/1‑91 (MQ=255)
                                                                            tcaaCGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGc               <  1:6840872/91‑1 (MQ=255)
                                                                             aaaCGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGct              >  2:6899740/1‑93 (MQ=255)
                                                                              aaCGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGctc             <  1:3640641/93‑1 (MQ=255)
                                                                               aCGTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGctct            <  1:161029/93‑1 (MQ=255)
                                                                                 gTTCCCCAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCttt          <  2:5089400/93‑1 (MQ=255)
                                                                                   tCCCCAGGGCTTCTCCGTTAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTAt        <  1:5764033/93‑1 (MQ=255)
                                                                                    ccccAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTAtt       <  1:8331319/93‑1 (MQ=255)
                                                                                       cAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTTTTTct    >  1:6895075/1‑92 (MQ=255)
                                                                                       cAGGGCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTATTTCa    <  1:597624/93‑1 (MQ=255)
                                                                                         gggCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTATTTCAtt  <  1:2099385/93‑1 (MQ=255)
                                                                                         gggCTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTATTTCAtt  >  1:7771344/1‑93 (MQ=255)
                                                                                            |                                                                                         
AAACTATCCCTCAACCAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTATTTCATT  >  NC_000913/2996465‑2996646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: