Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,013,656 T→C M159T (ATG→ACG)  ygfJ → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,013,6560TC99.7% 1271.1 / ‑5.3 362M159T (ATG→ACG) ygfJhypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (168/193);  total (169/193)
Fisher's exact test for biased strand distribution p-value = 4.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01

Only 100 of 370 total aligned reads displayed.

TCCCCGGCCATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTATGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAGGAAAGG  >  NC_000913/3013566‑3013744
                                                                                          |                                                                                        
  cccGGCCATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGga                                                                                      >  1:2071584/1‑93 (MQ=255)
   ccGGCCATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACGAATATGCGTCAGGCAATCCTTACGGgag                                                                                     >  2:1486948/1‑93 (MQ=255)
   ccGGCCATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGgag                                                                                     >  1:6860682/1‑93 (MQ=255)
     ggCCATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGTAGAt                                                                                   <  1:8383208/93‑1 (MQ=255)
     cgCCATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGAt                                                                                   <  2:7363304/92‑1 (MQ=255)
       ccATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCACTATGCGTCAGGCACTCCTTATGGGAGATCa                                                                                 >  1:6061557/1‑93 (MQ=255)
        cATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCat                                                                                >  1:8020676/1‑93 (MQ=255)
        cATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCat                                                                                >  2:1348866/1‑93 (MQ=255)
        cATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCat                                                                                >  1:1767998/1‑93 (MQ=255)
         aTCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTCCGGGAGATCatt                                                                               >  1:3033723/1‑93 (MQ=255)
         aTCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCatt                                                                               >  2:4777059/1‑93 (MQ=255)
          tCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCatta                                                                              <  2:5033327/93‑1 (MQ=255)
           ccGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCattat                                                                             <  1:3968859/93‑1 (MQ=255)
           ccGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCattat                                                                             <  1:3874544/93‑1 (MQ=255)
            cGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCattatt                                                                            <  1:3387635/93‑1 (MQ=255)
             gATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTc                                                                           >  1:7128796/1‑93 (MQ=255)
              aTTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTcc                                                                          >  1:5736912/1‑93 (MQ=255)
              aTTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTcc                                                                          <  1:2891785/93‑1 (MQ=255)
              aTTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTcc                                                                          >  1:789685/1‑93 (MQ=255)
               ttttAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCg                                                                         >  1:8191593/1‑93 (MQ=255)
                 ttAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTc                                                                       >  2:4329474/1‑93 (MQ=255)
                 ttAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTc                                                                       <  2:5397079/93‑1 (MQ=255)
                 ttAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTc                                                                       >  2:1164460/1‑93 (MQ=255)
                 ttAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTc                                                                       <  1:8626065/93‑1 (MQ=255)
                  tAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCg                                                                      <  2:4583365/93‑1 (MQ=255)
                  tAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCg                                                                      <  2:5128141/93‑1 (MQ=255)
                    gtgtCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGaa                                                                    >  2:3514143/1‑93 (MQ=255)
                     tgtCAAAGCCATGCCTTATGCAGGCAATCCAACGACCCAATGTCACCTATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGaaa                                                                   <  1:5519946/93‑1 (MQ=255)
                       tCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATa                                                                 >  2:7181375/1‑93 (MQ=255)
                       tCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATa                                                                 <  1:1832224/93‑1 (MQ=255)
                       tCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATa                                                                 >  1:7970336/1‑93 (MQ=255)
                          aaaCCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGaa                                                              <  2:8788512/93‑1 (MQ=255)
                          aaaCCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGaa                                                              <  2:3831995/93‑1 (MQ=255)
                           aaCCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGaaa                                                             <  1:2247162/93‑1 (MQ=255)
                            aCCATTCCTGATGCAGGCAAGCCAACGTCCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGaaaa                                                            <  2:6817243/93‑1 (MQ=255)
                            aCCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGaaaa                                                            >  1:2672601/1‑93 (MQ=255)
                             ccATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAAt                                                           >  1:8671445/1‑93 (MQ=255)
                             ccATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAAt                                                           <  1:7705034/93‑1 (MQ=255)
                             ccATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAAt                                                           <  2:4137936/93‑1 (MQ=255)
                               aTGCCTGACGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGc                                                         <  1:704962/93‑1 (MQ=255)
                                 gCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAg                                                       >  2:3740640/1‑93 (MQ=255)
                                    tGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGaaa                                                    >  1:4662433/1‑93 (MQ=255)
                                     gATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAaat                                                   >  2:7963159/1‑93 (MQ=255)
                                     gATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAaat                                                   <  2:2599859/93‑1 (MQ=255)
                                      ctGCAGGGACTCCAACGACCCAATGGCACCAATATGCGTCAGGCACTCCTTACGGGTGGTCATTATTCCGTCGCAATCCAAAATGCACAaata                                                  >  2:3670192/2‑93 (MQ=255)
                                      aTGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAaata                                                  <  1:894768/93‑1 (MQ=255)
                                      aTGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAaata                                                  <  1:1931328/93‑1 (MQ=255)
                                        gCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAaataat                                                <  2:5278560/93‑1 (MQ=255)
                                        gCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAaataat                                                >  1:6307819/1‑93 (MQ=255)
                                         cAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAAtt                                               <  2:5604622/93‑1 (MQ=255)
                                         cAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAAtt                                               >  2:6967055/1‑93 (MQ=255)
                                         cAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAAtt                                               <  2:2430480/93‑1 (MQ=255)
                                         cAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAAtt                                               <  1:3631825/93‑1 (MQ=255)
                                          aGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAAttt                                              >  1:962957/1‑93 (MQ=255)
                                          aGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAAttt                                              >  2:6047977/1‑93 (MQ=255)
                                           ggCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAAtttt                                             >  2:8817297/1‑93 (MQ=255)
                                           ggCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAAtttt                                             <  1:3561218/93‑1 (MQ=255)
                                           ggCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAAtttt                                             >  1:3259184/1‑93 (MQ=255)
                                            gCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTa                                            >  1:4304245/1‑93 (MQ=255)
                                            gCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTa                                            <  2:4480333/93‑1 (MQ=255)
                                              aaTCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGa                                          <  1:7232511/93‑1 (MQ=255)
                                               aTCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGat                                         <  2:2769561/93‑1 (MQ=255)
                                               aTCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGat                                         <  1:2480532/93‑1 (MQ=255)
                                                tCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGata                                        <  1:6919033/93‑1 (MQ=255)
                                                 ccAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGatat                                       <  2:5963956/93‑1 (MQ=255)
                                                 ccAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGatat                                       >  2:1118799/1‑93 (MQ=255)
                                                 ccAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGatat                                       <  1:6630966/93‑1 (MQ=255)
                                                  cAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATAtt                                      <  2:783954/93‑1 (MQ=255)
                                                   aaCGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTg                                     >  2:1685444/1‑93 (MQ=255)
                                                   aaCGACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTg                                     >  1:101034/1‑93 (MQ=255)
                                                      gACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATa                                  <  2:6220987/93‑1 (MQ=255)
                                                      gACCCAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTCAGATATTGaga                                  <  2:8437704/93‑3 (MQ=255)
                                                         ccAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTc                               <  1:1992373/93‑1 (MQ=255)
                                                         ccAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTc                               <  1:8249388/93‑1 (MQ=255)
                                                         ccAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTc                               >  2:5639501/1‑93 (MQ=255)
                                                         ccAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTc                               <  2:854126/93‑1 (MQ=255)
                                                          cAATGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTcc                              <  2:2981770/93‑1 (MQ=255)
                                                           aaTGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCg                             >  2:5773621/1‑93 (MQ=255)
                                                             tGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGga                           <  1:138913/93‑1 (MQ=255)
                                                             tGTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGga                           >  1:851700/1‑93 (MQ=255)
                                                              gTCACCAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGgac                          <  2:8228986/93‑1 (MQ=255)
                                                                   cAATATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACtt                     >  2:3436010/1‑93 (MQ=255)
                                                                    aaTATGCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACttt                    >  2:2554056/1‑93 (MQ=255)
                                                                         gCGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTAc               <  2:6322926/93‑1 (MQ=255)
                                                                          cGTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACa              <  2:6575740/93‑1 (MQ=255)
                                                                           gTCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAg             <  2:7766095/93‑1 (MQ=255)
                                                                            tCAGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGc            <  1:4953927/93‑1 (MQ=255)
                                                                              aGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAgaga          >  2:834848/1‑93 (MQ=255)
                                                                              aGGCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGa          >  2:8649450/1‑93 (MQ=255)
                                                                               ggCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGaa         >  1:3489693/1‑93 (MQ=255)
                                                                               ggCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGaa         >  2:1970579/1‑93 (MQ=255)
                                                                                gCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAg        <  1:5797444/93‑1 (MQ=255)
                                                                                gCACTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAg        <  1:5893411/93‑1 (MQ=255)
                                                                                  aCTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAGGa      >  1:1162600/1‑93 (MQ=255)
                                                                                  aCTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAGGa      >  1:6456337/1‑93 (MQ=255)
                                                                                  aCTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAGGa      >  2:3341772/1‑93 (MQ=255)
                                                                                   cTCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAGGaa     >  1:4403613/1‑93 (MQ=255)
                                                                                    tCCTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAGGaaa    >  1:523460/1‑93 (MQ=255)
                                                                                      cTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAGGAAAgg  <  2:6462923/93‑1 (MQ=255)
                                                                                      cTTACGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAGGAAAgg  >  2:2256530/1‑93 (MQ=255)
                                                                                          |                                                                                        
TCCCCGGCCATCCGATTTTAGTGTCAAAACCATGCCTGATGCAGGCAATCCAACGACCCAATGTCACCAATATGCGTCAGGCACTCCTTATGGGAGATCATTATTCCGTCGAAATAGAAAATGCAGAAATAATTTTAGATATTGATACTCCGGACGACTTTATTACAGCGAAGGAAAGG  >  NC_000913/3013566‑3013744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: