Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,446,647 T→C T54A (ACC→GCC)  rplP ← 50S ribosomal subunit protein L16

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,446,6470TC99.7% 1095.3 / ‑4.8 321T54A (ACC→GCC) rplP50S ribosomal subunit protein L16
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (176/144);  total (176/145)
Fisher's exact test for biased strand distribution p-value = 4.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.59e-01

Only 100 of 327 total aligned reads displayed.

TACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCG  >  NC_000913/3446557‑3446736
                                                                                          |                                                                                         
 accCATACCCTCTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCAt                                                                                        <  1:6806623/93‑1 (MQ=255)
  cccATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATa                                                                                       <  2:1198124/93‑1 (MQ=255)
   ccATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAg                                                                                      >  1:127751/1‑93 (MQ=255)
   ccATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAg                                                                                      <  1:5676827/93‑1 (MQ=255)
   ccATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAg                                                                                      <  2:3653206/93‑1 (MQ=255)
    cATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGc                                                                                     >  2:6189169/1‑93 (MQ=255)
     aTACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCa                                                                                    >  2:4471070/1‑93 (MQ=255)
     aTACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCa                                                                                    >  2:4184002/1‑93 (MQ=255)
     aTACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCa                                                                                    >  2:2242160/1‑93 (MQ=255)
     aTACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCa                                                                                    >  1:909177/1‑93 (MQ=255)
      tACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCac                                                                                   >  2:545759/1‑93 (MQ=255)
      tACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCac                                                                                   >  2:1737006/1‑93 (MQ=255)
      tACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCac                                                                                   <  1:8446992/93‑1 (MQ=255)
      tACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTCGACGCTTAACTGCACGGGCCATAGCac                                                                                   >  1:7161963/1‑93 (MQ=255)
       aCGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCacg                                                                                  >  2:4979575/1‑93 (MQ=255)
        cGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCacga                                                                                 <  1:847702/93‑1 (MQ=255)
         gCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCacgac                                                                                >  1:3948066/1‑93 (MQ=255)
          cACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCacgacg                                                                               >  1:1801431/1‑93 (MQ=255)
           ccTGCCAGCGGTGTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGt                                                                              <  2:6529414/92‑1 (MQ=255)
           aCTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGt                                                                              >  1:290177/1‑93 (MQ=255)
            cTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGtg                                                                             <  2:1231164/93‑1 (MQ=255)
                cAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGtgctgc                                                                         <  1:5429055/93‑1 (MQ=255)
                 aGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTgctgct                                                                        <  2:2132705/93‑1 (MQ=255)
                  gCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCtt                                                                       <  1:1032289/93‑1 (MQ=255)
                     gCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGa                                                                    >  1:8099174/1‑93 (MQ=255)
                      cTTTTCAGTGATCGGTTTGTCCGGGAACCCCCGGATCCAGCTCTTACCTTGACGCTTAACTGCACGGGCCATAGCCCGACGTGCTGCTTCGAt                                                                   <  1:7607489/93‑1 (MQ=255)
                       ttttCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATc                                                                  <  1:5039313/93‑1 (MQ=255)
                         ttCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTg                                                                <  1:8374705/93‑1 (MQ=255)
                          tCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGa                                                               <  1:7442094/93‑1 (MQ=255)
                          tCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGa                                                               <  2:253265/93‑1 (MQ=255)
                          tCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGa                                                               <  2:2644623/93‑1 (MQ=255)
                           taGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGAc                                                              <  2:6757575/92‑1 (MQ=255)
                           cattGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGAc                                                              >  1:6553522/4‑93 (MQ=255)
                           cAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGAc                                                              <  2:5595289/93‑1 (MQ=255)
                            aGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACg                                                             <  1:3573587/93‑1 (MQ=255)
                            aGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACg                                                             >  1:795499/1‑93 (MQ=255)
                             gTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACgg                                                            >  2:1914343/1‑93 (MQ=255)
                               gATCTGTTTTTCCGGGAACACACGGATCAAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGc                                                          <  2:8757307/93‑1 (MQ=255)
                               gATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGc                                                          <  1:3767892/93‑1 (MQ=255)
                               aatgggTTTGTCCGGGAACACACGGATCCATATCTTACCTTGACGCTAAACTGCATGGGCCGTAGCACGACGTGCTGCTTCGATCTGACGGGc                                                          <  2:4295250/89‑1 (MQ=255)
                                aTCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCa                                                         <  2:6068390/93‑1 (MQ=255)
                                aTCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCa                                                         >  2:8085473/1‑93 (MQ=255)
                                    gTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCa                                                     >  1:6624047/1‑93 (MQ=255)
                                     tttGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAg                                                    >  1:1574177/1‑93 (MQ=255)
                                     tttGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAg                                                    >  2:3991359/1‑93 (MQ=255)
                                     tttGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAg                                                    <  1:7220329/93‑1 (MQ=255)
                                      ttGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAga                                                   >  1:5176908/1‑93 (MQ=255)
                                      ttGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAga                                                   >  1:2624233/1‑93 (MQ=255)
                                       tGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAgac                                                  >  1:1994591/1‑93 (MQ=255)
                                       tGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAgac                                                  <  2:6566502/93‑1 (MQ=255)
                                        ttCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAgacg                                                 <  2:7378669/92‑1 (MQ=255)
                                        gTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAgacg                                                 >  2:3171967/1‑93 (MQ=255)
                                          ccGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTCACGGGCAGTCAgacgac                                               >  1:2556238/1‑93 (MQ=255)
                                           cGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGAcc                                              >  1:4881824/1‑93 (MQ=255)
                                             ggAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCAc                                            >  2:4807727/1‑93 (MQ=255)
                                             ggAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCAc                                            <  1:2430153/93‑1 (MQ=255)
                                              gAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACg                                           <  1:6255643/93‑1 (MQ=255)
                                                 cacacGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGcc                                        >  1:1914959/1‑93 (MQ=255)
                                                 cacacGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGcc                                        >  1:6363938/1‑93 (MQ=255)
                                                 cacacGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGcc                                        <  2:8462102/93‑1 (MQ=255)
                                                  acacGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCa                                       <  2:6673803/93‑1 (MQ=255)
                                                  acacGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCa                                       <  2:592325/93‑1 (MQ=255)
                                                   cacGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCaa                                      >  1:7852123/1‑93 (MQ=255)
                                                     cGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACa                                    <  1:4030271/93‑1 (MQ=255)
                                                      ggATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAg                                   <  1:8003639/93‑1 (MQ=255)
                                                      ggATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAg                                   >  2:3937598/1‑93 (MQ=255)
                                                       gATCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGc                                  <  2:6992955/93‑1 (MQ=255)
                                                       gATCCAGATCTGACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGc                                  <  1:4685875/93‑1 (MQ=255)
                                                        aTCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCt                                 >  2:435881/1‑93 (MQ=255)
                                                         tCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCtt                                >  2:2049533/1‑93 (MQ=255)
                                                         tCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCtt                                <  1:1660752/93‑1 (MQ=255)
                                                         tCCAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCtt                                >  2:5267373/1‑93 (MQ=255)
                                                          ccAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCttt                               >  2:1802240/1‑93 (MQ=255)
                                                           cAGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTc                              >  1:3285470/1‑93 (MQ=255)
                                                            aGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCa                             <  1:7323972/93‑1 (MQ=255)
                                                            aGATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCa                             >  2:8212821/1‑93 (MQ=255)
                                                             gATCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAg                            <  2:511118/93‑1 (MQ=255)
                                                               tCTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGAc                          <  1:2243591/93‑1 (MQ=255)
                                                                cTTACCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGAcc                         >  2:2462764/1‑93 (MQ=255)
                                                                   aCCTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGaa                      <  1:6900605/93‑1 (MQ=255)
                                                                     cTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGc                    <  1:3820843/93‑1 (MQ=255)
                                                                     cTTGACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGc                    <  1:4534406/93‑1 (MQ=255)
                                                                      ttGGCGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCt                   <  2:8634562/93‑1 (MQ=255)
                                                                       tGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTg                  <  1:5943227/93‑1 (MQ=255)
                                                                        gACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGc                 >  2:8257013/1‑93 (MQ=255)
                                                                        gACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGc                 <  2:4091306/93‑1 (MQ=255)
                                                                        gACGCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTCCAGACCGAAGCTGc                 >  2:4694584/1‑93 (MQ=255)
                                                                          cGCTTAACTGCCCGGGCCATAGCACGACGTACTGCTTCGATCTGCCGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCg               <  1:5723163/93‑1 (MQ=255)
                                                                           gCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGa              <  1:6021863/93‑1 (MQ=255)
                                                                           gCTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGa              >  1:8616905/1‑93 (MQ=255)
                                                                            cTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGaa             <  2:4527942/93‑1 (MQ=255)
                                                                            cTTAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGaa             <  2:7597795/93‑1 (MQ=255)
                                                                              tAACTGCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGc           >  2:78937/1‑93 (MQ=255)
                                                                                   gCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACa      <  2:3483593/93‑1 (MQ=255)
                                                                                   gCACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACa      <  2:1348389/93‑1 (MQ=255)
                                                                                    cACGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACAt     <  1:7754164/93‑1 (MQ=255)
                                                                                     ccGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATc    <  2:1527484/92‑1 (MQ=255)
                                                                                     aCGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATc    >  2:3571071/1‑93 (MQ=255)
                                                                                      cGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATcc   >  2:7115968/1‑93 (MQ=255)
                                                                                      cGGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATcc   >  2:2723565/1‑93 (MQ=255)
                                                                                          |                                                                                         
TACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCG  >  NC_000913/3446557‑3446736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: