Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,500,011 G→A R12Q (CGG→CAG)  b3372 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,500,0110GA100.0% 1249.6 / NA 352R12Q (CGG→CAG) b3372hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (204/148);  total (204/148)

Only 100 of 374 total aligned reads displayed.

ATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGC  >  NC_000913/3499921‑3500100
                                                                                          |                                                                                         
atatTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCagcagc                                                                                         <  1:1956110/93‑1 (MQ=255)
 tatTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCt                                                                                        >  2:7307460/1‑93 (MQ=255)
 tatTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTAACTGCGGCCACCAGCAGCt                                                                                        >  2:5230946/1‑93 (MQ=255)
 tatTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGCCTGTTTCTCTGCGGCCACCCGCAGcg                                                                                        >  1:1046504/1‑92 (MQ=255)
    tAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGcc                                                                                     <  2:2283580/93‑1 (MQ=255)
    tAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGcc                                                                                     <  1:7043916/93‑1 (MQ=255)
     aaTCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCCCCCGCAGCTGCCt                                                                                    >  1:7849732/1‑93 (MQ=255)
      aTCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTa                                                                                   >  2:6898468/1‑93 (MQ=255)
       tCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTAt                                                                                  >  2:6579418/1‑93 (MQ=255)
       tCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTAt                                                                                  >  2:5660297/1‑93 (MQ=255)
       tCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTAt                                                                                  >  2:4132546/1‑93 (MQ=255)
          ctctCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGa                                                                               >  1:5294197/1‑93 (MQ=255)
          ctctCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAAAAGGTATGTTTACCTGCGGCCACAAGAAGCTGCCTATTGa                                                                               >  2:7510707/1‑93 (MQ=255)
           tctcCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGaa                                                                              <  1:3580598/93‑1 (MQ=255)
           tctcCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGaa                                                                              >  1:8551409/1‑93 (MQ=255)
              cccggcccggCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAacac                                                                           <  2:1126915/93‑1 (MQ=255)
              cccggcccggCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAacac                                                                           >  2:4550663/1‑93 (MQ=255)
              cccggcccggCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGGATGTTTACCTGCGGCCACCCGCAGCTGCCTATTTTacac                                                                           >  2:1542934/1‑93 (MQ=255)
               ccggcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACg                                                                          >  1:5438493/1‑93 (MQ=255)
               ccggcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACg                                                                          >  1:8302043/1‑93 (MQ=255)
               ccggcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACg                                                                          >  2:871254/1‑93 (MQ=255)
                 ggcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCa                                                                        >  1:8448888/1‑93 (MQ=255)
                 ggcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCa                                                                        <  1:6206984/93‑1 (MQ=255)
                 ggcccggcAACGGGACGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCa                                                                        <  1:6886930/93‑1 (MQ=255)
                  gcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCAt                                                                       >  2:168294/1‑93 (MQ=255)
                  gcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCAt                                                                       >  2:348085/1‑93 (MQ=255)
                    ccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCAttt                                                                     >  1:3257683/1‑93 (MQ=255)
                     cggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTc                                                                    >  2:4568515/1‑93 (MQ=255)
                       gcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGt                                                                  >  1:387026/1‑93 (MQ=255)
                       gcAACGGGCCGGATTGACGCAAGGAGTTACCCGATGAAAACAGGTATTTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGt                                                                  <  1:2827380/93‑1 (MQ=255)
                       gcAAAGGGCCGGATTTTCGGAAGGAAGTTCCCGATGAAAACAGGTATGGTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGt                                                                  <  1:8431322/93‑1 (MQ=255)
                        cAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTg                                                                 >  2:1607343/1‑93 (MQ=255)
                         aaCGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGa                                                                <  1:3741783/93‑1 (MQ=255)
                         aaCGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGa                                                                >  1:1409884/1‑93 (MQ=255)
                          aCGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGAt                                                               >  2:6365694/1‑93 (MQ=255)
                          aCGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGAt                                                               <  1:2993713/93‑1 (MQ=255)
                          aCGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGAt                                                               <  2:6296562/93‑1 (MQ=255)
                          aCGGGCCGGAGTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGAt                                                               <  1:5784387/93‑1 (MQ=255)
                            gggCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGc                                                             <  2:1197084/93‑1 (MQ=255)
                             ggCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCa                                                            >  2:5093503/1‑93 (MQ=255)
                              gCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCaa                                                           >  2:3612841/1‑93 (MQ=255)
                                cGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGc                                                         >  1:7953656/1‑93 (MQ=255)
                                 ggATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCg                                                        >  1:751344/1‑93 (MQ=255)
                                  gATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGa                                                       >  2:4046837/1‑93 (MQ=255)
                                  gATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGa                                                       >  2:2326777/1‑93 (MQ=255)
                                  gATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGa                                                       >  1:4180742/1‑93 (MQ=255)
                                   aTTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAg                                                      <  1:5136000/93‑1 (MQ=255)
                                   aTTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAg                                                      >  1:2254608/1‑93 (MQ=255)
                                   aTTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAg                                                      >  2:5853233/1‑93 (MQ=255)
                                      tACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTg                                                   <  2:2377828/93‑1 (MQ=255)
                                         gCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGt                                                <  2:4442198/93‑1 (MQ=255)
                                         gCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGt                                                >  2:2675731/1‑93 (MQ=255)
                                          cAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGtt                                               <  1:3113561/93‑1 (MQ=255)
                                          cAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGtt                                               <  2:5584103/93‑1 (MQ=255)
                                           caGGAGTTTCCCGATGAAAACAGGTATGTTTTCCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTa                                              <  1:7266037/92‑1 (MQ=255)
                                           aaGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTa                                              >  2:86042/1‑93 (MQ=255)
                                               aGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTacgac                                          >  1:6596132/1‑93 (MQ=255)
                                                gTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTacgacg                                         >  2:1778043/1‑93 (MQ=255)
                                                   aCCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCa                                      >  1:6070576/1‑93 (MQ=255)
                                                     ccGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATc                                    >  1:6718011/1‑93 (MQ=255)
                                                     ccGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATc                                    <  1:4650852/93‑1 (MQ=255)
                                                     ccGATGAAAACAGGTATGTTAACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATc                                    <  2:4719838/93‑1 (MQ=255)
                                                      cGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCg                                   >  1:8731270/1‑93 (MQ=255)
                                                       gATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGa                                  <  1:6248822/93‑1 (MQ=255)
                                                         tGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGaaa                                >  2:6095968/1‑93 (MQ=255)
                                                          gAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAAt                               >  2:7047140/1‑93 (MQ=255)
                                                           aaaaCAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAAtt                              >  2:3001065/1‑93 (MQ=255)
                                                              aCAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTgg                           <  2:2630054/93‑1 (MQ=255)
                                                               cAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTggg                          <  1:7910918/93‑1 (MQ=255)
                                                               cAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTggg                          >  2:8471592/1‑93 (MQ=255)
                                                                aGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTgggg                         >  1:2676463/1‑93 (MQ=255)
                                                                aGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTgggg                         >  1:3418783/1‑93 (MQ=255)
                                                                 ggTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGc                        <  1:7387961/93‑1 (MQ=255)
                                                                 ggTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGc                        <  1:6010234/93‑1 (MQ=255)
                                                                 ggTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGc                        >  2:5452340/1‑93 (MQ=255)
                                                                 ggTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGc                        >  2:1030787/1‑93 (MQ=255)
                                                                  gTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCg                       <  2:4238156/93‑1 (MQ=255)
                                                                  gTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATCTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCTAAATTAGGGGCg                       >  2:7830977/1‑93 (MQ=255)
                                                                    aTGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGt                     <  1:7632913/93‑1 (MQ=255)
                                                                    aTGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGt                     <  2:5001899/93‑1 (MQ=255)
                                                                     tGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTc                    <  2:3102466/93‑1 (MQ=255)
                                                                        ttACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGcc                 <  2:7903889/93‑1 (MQ=255)
                                                                          tccTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCg               <  2:2814838/92‑1 (MQ=255)
                                                                          aCCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCg               >  2:4602810/1‑93 (MQ=255)
                                                                          aCCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCg               <  1:5576958/93‑1 (MQ=255)
                                                                          aCCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCg               >  1:6422063/1‑93 (MQ=255)
                                                                           ccTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGc              <  1:4738143/93‑1 (MQ=255)
                                                                            cTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGcc             >  1:2147584/1‑92 (MQ=255)
                                                                            cTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCa             <  2:7686021/93‑1 (MQ=255)
                                                                             tGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCAc            <  2:8185618/93‑1 (MQ=255)
                                                                              gCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCAcg           <  1:1679286/93‑1 (MQ=255)
                                                                               cGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCAcgc          >  1:1179551/1‑93 (MQ=255)
                                                                               cGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCAcgc          <  2:6222784/93‑1 (MQ=255)
                                                                                 gCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGt        >  2:8040892/1‑93 (MQ=255)
                                                                                 gCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGt        >  1:5900722/1‑93 (MQ=255)
                                                                                  ccaccaGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGtt       <  2:2024348/93‑1 (MQ=255)
                                                                                  ccaccaGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGtt       <  1:2380440/93‑1 (MQ=255)
                                                                                   caccaGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTc      <  2:3285909/93‑1 (MQ=255)
                                                                                   caccaGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTc      >  2:1385417/1‑93 (MQ=255)
                                                                                       agcagcTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCgcgc  >  2:2171276/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGC  >  NC_000913/3499921‑3500100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: