Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 418,805 A→G intergenic (+397/‑10) phoR → / → brnQ positive and negative sensor protein for pho regulon/branched chain amino acid transport system II carrier protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913418,8050AG99.7% 1064.9 / ‑4.9 307intergenic (+397/‑10)phoR/brnQpositive and negative sensor protein for pho regulon/branched chain amino acid transport system II carrier protein
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (156/150);  total (156/151)
Fisher's exact test for biased strand distribution p-value = 4.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.29e-01

Only 100 of 315 total aligned reads displayed.

TATTTCCCGCTAAAATTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCAGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAGGTAACAT  >  NC_000913/418715‑418894
                                                                                          |                                                                                         
 aTTACCCGCTAAAATTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTa                                                                                        <  1:5021019/93‑1 (MQ=255)
     cccGCTAAAATTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGAt                                                                                    <  1:5979300/93‑1 (MQ=255)
      ccGCTAAAATTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTAAGAtt                                                                                   >  1:6086714/1‑93 (MQ=255)
      ccGCTAAAATTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGAGGGATGAtt                                                                                   >  1:3033212/1‑93 (MQ=255)
       cGCTAAAATTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGAttt                                                                                  <  2:6763254/93‑1 (MQ=255)
        gCTAAAATTGTTTAAATATACCGCTGTATCATCCCCATGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTa                                                                                 >  1:3415920/1‑93 (MQ=255)
        gCTAAAATTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTa                                                                                 >  2:8110933/1‑93 (MQ=255)
          tAAAATTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTAta                                                                               >  2:1551154/1‑92 (MQ=255)
              aTTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGAccc                                                                           >  2:202586/1‑93 (MQ=255)
              aTTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGAccc                                                                           >  1:2753097/1‑93 (MQ=255)
               ttGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCa                                                                          >  1:8251530/1‑93 (MQ=255)
                tGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCAt                                                                         <  2:6345415/93‑1 (MQ=255)
                   ttAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCaa                                                                      >  1:8514063/1‑93 (MQ=255)
                     aaaTATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAAtt                                                                    >  1:6587079/1‑93 (MQ=255)
                     aaaTATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAAtt                                                                    >  1:6941593/1‑93 (MQ=255)
                      aaTATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTa                                                                   <  2:5027556/93‑1 (MQ=255)
                         ataCCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGa                                                                >  2:2248333/1‑93 (MQ=255)
                         ataCCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGa                                                                <  2:5568591/93‑1 (MQ=255)
                          taCCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGAt                                                               <  2:6002905/93‑1 (MQ=255)
                          taCCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGAt                                                               >  1:8593935/1‑93 (MQ=255)
                          taCCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGAt                                                               <  2:5359785/93‑1 (MQ=255)
                          taCCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGAt                                                               <  2:1522279/93‑1 (MQ=255)
                          taCCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGAt                                                               <  1:2612146/93‑1 (MQ=255)
                           aCCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATc                                                              <  2:2167249/93‑1 (MQ=255)
                            ccGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATcg                                                             >  1:4967224/1‑93 (MQ=255)
                             cGCTGTATCATCCCCAGGGATTGGCACAAAAATTCAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATcgc                                                            <  1:927925/93‑1 (MQ=255)
                             cGCTGTATCACACCCAGGGATTGTCACAAAAATTTAACGTTAGAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATcgc                                                            <  1:6759495/93‑1 (MQ=255)
                               cTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATcgcgc                                                          >  1:7158897/1‑93 (MQ=255)
                               cTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATcgcgc                                                          >  1:6291320/1‑93 (MQ=255)
                                tGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATcgcgcg                                                         >  2:2715902/1‑93 (MQ=255)
                                  tATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGat                                                       >  1:5755540/1‑93 (MQ=255)
                                   atcatcCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGata                                                      <  1:3667784/93‑1 (MQ=255)
                                    tcatcCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGatat                                                     <  2:8289195/93‑1 (MQ=255)
                                     catcCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATatc                                                    <  1:1036886/93‑1 (MQ=255)
                                      atcCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATatca                                                   <  1:6060872/93‑1 (MQ=255)
                                       tcCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATatcat                                                  >  1:137186/1‑93 (MQ=255)
                                       tcCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATatcat                                                  >  2:4319829/1‑93 (MQ=255)
                                       tcCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATatcat                                                  >  1:8033922/1‑93 (MQ=255)
                                          ccAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGc                                               >  1:5651183/1‑93 (MQ=255)
                                          ccAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGc                                               <  1:4012820/93‑1 (MQ=255)
                                          ccAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGc                                               >  1:4683902/1‑93 (MQ=255)
                                          ccAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGc                                               >  1:4869604/1‑93 (MQ=255)
                                           cAGGGGTAGGCACAAAAGTCTAAAGTTACCACAGTGCATCCGCAGCCGTGATGATTTGTGACCCGTCAATTAAGATCGCGCGAAATCATCGct                                              >  2:5787416/1‑93 (MQ=255)
                                           cAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGct                                              >  2:590138/1‑93 (MQ=255)
                                           cAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGct                                              >  2:7226403/1‑93 (MQ=255)
                                            aGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATCTCAGCGctc                                             >  1:2368791/1‑93 (MQ=255)
                                            aGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGctc                                             >  1:5304298/1‑93 (MQ=255)
                                            aGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGctc                                             <  2:2971504/93‑1 (MQ=255)
                                            aGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGctc                                             <  1:1835635/93‑1 (MQ=255)
                                             gggATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGctct                                            <  1:664995/93‑1 (MQ=255)
                                             gggATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGctct                                            <  2:4823267/93‑1 (MQ=255)
                                              ggATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTg                                           <  1:544846/93‑1 (MQ=255)
                                               gATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTgg                                          >  1:2481979/1‑93 (MQ=255)
                                               gATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTgg                                          <  1:2810703/93‑1 (MQ=255)
                                               gATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTgg                                          >  2:6004067/1‑93 (MQ=255)
                                                aTTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTggg                                         >  2:2374133/1‑93 (MQ=255)
                                                   ggCACAAAAATTAAACGTTCCAACACCACAACCACAGGCGGTATGATTAAAGAACCATCAATTAAGATCGAGCGATCTCATAGCTATGAGCtt                                      <  2:7809927/93‑1 (MQ=255)
                                                    gCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCttt                                     >  2:4904383/1‑93 (MQ=255)
                                                    gCACAAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCttt                                     <  2:5489123/93‑1 (MQ=255)
                                                     cacaAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTa                                    >  1:4443143/1‑93 (MQ=255)
                                                     cacaAAAATTTAACGTTACAACACCACATCCACAGGCAGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTa                                    <  2:6165197/93‑1 (MQ=255)
                                                      acaAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTAt                                   >  1:2717876/1‑93 (MQ=255)
                                                      acaAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTAt                                   >  1:1452533/1‑93 (MQ=255)
                                                      acaAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTAt                                   <  2:646540/93‑1 (MQ=255)
                                                       caAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATg                                  <  1:58300/93‑1 (MQ=255)
                                                       caAAAATTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATg                                  >  1:5388145/1‑93 (MQ=255)
                                                         aaaaTTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGAc                                <  2:1023237/93‑1 (MQ=255)
                                                         aaaaTTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGAc                                >  2:3191000/1‑93 (MQ=255)
                                                            aTTTAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACAtt                             <  2:6716544/93‑1 (MQ=255)
                                                              ttAACGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGATTTATGACATTTg                           <  1:7739442/93‑1 (MQ=255)
                                                                  cGTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCgtt                       <  1:7088639/93‑1 (MQ=255)
                                                                   gTTACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCgttg                      <  1:1564103/93‑1 (MQ=255)
                                                                    ttACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCgttgt                     <  2:5168033/93‑1 (MQ=255)
                                                                    ttACAACACCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCgttgt                     <  1:2280178/93‑1 (MQ=255)
                                                                      acaacaCCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTtc                   <  1:2867938/93‑1 (MQ=255)
                                                                      acaacaCCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTtc                   >  1:7125545/1‑93 (MQ=255)
                                                                       caacaCCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTtcg                  <  1:6197854/93‑1 (MQ=255)
                                                                        aacaCCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTtcgt                 <  2:4564245/93‑1 (MQ=255)
                                                                        aacaCCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTtcgt                 >  1:1992326/1‑93 (MQ=255)
                                                                         acacCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTtcgtc                <  2:6820654/93‑1 (MQ=255)
                                                                         acacCACATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTtcgtc                >  1:6022216/1‑93 (MQ=255)
                                                                         acacCACATCCACAGGCGGGATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCGCTGGGCTTTATGACATTTGCGTTGTtcgtc                >  2:8611578/1‑93 (MQ=255)
                                                                          caccacATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTtcgtcg               >  2:6982208/1‑93 (MQ=255)
                                                                           cccacATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCgg              <  2:1448602/92‑1 (MQ=255)
                                                                           accacATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCgg              <  2:3906316/93‑1 (MQ=255)
                                                                           accacATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCgg              >  1:1282473/1‑93 (MQ=255)
                                                                            ccacATCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGgc             >  2:965905/1‑93 (MQ=255)
                                                                             cacaTCCACAGGCGGTATGATTTATGACCCGTCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGgcg            >  2:18368/1‑93 (MQ=255)
                                                                             cacaTCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGgcg            <  2:5674925/93‑1 (MQ=255)
                                                                                 tCCACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAgg        >  1:474441/1‑93 (MQ=255)
                                                                                  ccACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAgga       >  2:4426455/1‑92 (MQ=255)
                                                                                  ccACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAGGt       <  2:5923111/93‑1 (MQ=255)
                                                                                  ccACAGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAGGt       <  1:7594602/93‑1 (MQ=255)
                                                                                    acaGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAGGTaa     <  1:4469735/93‑1 (MQ=255)
                                                                                    acaGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTCTATGACATTTGCGTTGTTCGTCGGCGCAGGTaa     >  1:7840010/1‑93 (MQ=255)
                                                                                     caGGCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAGGTAAc    <  2:3415920/93‑1 (MQ=255)
                                                                                       ggCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAGGTAACat  <  2:1279305/93‑1 (MQ=255)
                                                                                       ggCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAGGTAACat  <  1:512745/93‑1 (MQ=255)
                                                                                       ggCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAGGTAACat  >  2:862894/1‑93 (MQ=255)
                                                                                       ggCGGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAGGTAACat  >  1:1081699/1‑93 (MQ=255)
                                                                                          |                                                                                         
TATTTCCCGCTAAAATTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCAGTATGATTTATGACCCATCAATTAAGATCGCGCGATATCATCGCTCTGGGCTTTATGACATTTGCGTTGTTCGTCGGCGCAGGTAACAT  >  NC_000913/418715‑418894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: