Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,041,654 G→A intergenic (+29/‑125) dsbA → / → b3861 protein disulfide isomerase I/putative GTP‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,041,6540GA100.0% 212.6 / NA 61intergenic (+29/‑125)dsbA/b3861protein disulfide isomerase I/putative GTP‑binding protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (6/55);  total (6/55)

ATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAGTATTCACGGGCTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGAT  >  NC_000913/4041564‑4041742
                                                                                          |                                                                                         
atatGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATa                                                                                         <  1:735425/93‑1 (MQ=255)
atatGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATa                                                                                         <  1:4534765/93‑1 (MQ=255)
 tatGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAatat                                                                                        <  1:6733309/93‑1 (MQ=255)
  atGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATAtt                                                                                       <  2:8750010/93‑1 (MQ=255)
  atGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATAtt                                                                                       <  1:3064121/93‑1 (MQ=255)
  atGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATAtt                                                                                       <  2:6328822/93‑1 (MQ=255)
   tGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTc                                                                                      <  1:960951/93‑1 (MQ=255)
   tGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTc                                                                                      <  1:7213293/93‑1 (MQ=255)
    gtaTGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCa                                                                                     <  2:8101443/91‑1 (MQ=255)
    ggATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCa                                                                                     <  2:1245489/93‑1 (MQ=255)
    ggATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCa                                                                                     <  2:2746728/93‑1 (MQ=255)
    ggATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCa                                                                                     <  2:3048123/93‑1 (MQ=255)
    ggATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCa                                                                                     <  2:5204638/93‑1 (MQ=255)
    ggATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCa                                                                                     <  2:525240/93‑1 (MQ=255)
    ggATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCa                                                                                     <  1:2931898/93‑1 (MQ=255)
    ggATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCCAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCa                                                                                     <  2:5180810/93‑1 (MQ=255)
     gATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCAc                                                                                    <  2:2917619/93‑1 (MQ=255)
     gATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCAc                                                                                    <  2:842767/93‑1 (MQ=255)
      aTGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACg                                                                                   <  1:4746589/93‑1 (MQ=255)
       tGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCTTGAATATTCACgg                                                                                  <  1:5805391/93‑1 (MQ=255)
       tGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACgg                                                                                  <  1:1742608/93‑1 (MQ=255)
         tttttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGc                                                                                <  2:8472223/93‑1 (MQ=255)
         tttttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGc                                                                                <  1:7599360/93‑1 (MQ=255)
         tttttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGc                                                                                <  2:4374981/93‑1 (MQ=255)
         tttttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGc                                                                                <  2:4374980/93‑1 (MQ=255)
          ttttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCt                                                                              <  2:7868267/93‑1 (MQ=255)
           tttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtt                                                                             <  2:3656956/93‑1 (MQ=255)
           tttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtt                                                                             <  1:2293569/93‑1 (MQ=255)
           tttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtt                                                                             <  2:6497413/93‑1 (MQ=255)
           tttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtt                                                                             <  1:4297784/93‑1 (MQ=255)
           tttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtt                                                                             <  2:2515707/93‑1 (MQ=255)
           tttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtt                                                                             <  2:6108315/93‑1 (MQ=255)
            ttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCttt                                                                            <  2:6167099/93‑1 (MQ=255)
            ttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCttt                                                                            <  1:1112310/93‑1 (MQ=255)
            ttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCttt                                                                            <  1:4189169/93‑1 (MQ=255)
            ttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCttt                                                                            <  1:5352179/93‑1 (MQ=255)
            ttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCttt                                                                            <  1:6868474/93‑1 (MQ=255)
            ttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCttt                                                                            <  1:3479754/93‑1 (MQ=255)
            ttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCttt                                                                            <  1:1140353/93‑1 (MQ=255)
            ttGTTCAGCAGTAGGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAAGTCAATGTAAATTACATAAAGCCCGTGAATATTCCCGGGCttt                                                                            <  1:3479753/93‑1 (MQ=255)
             tGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtttt                                                                           <  2:1391884/93‑1 (MQ=255)
              gTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCttttt                                                                          <  1:4880886/93‑1 (MQ=255)
                tCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCttttttt                                                                        <  2:1119032/93‑2 (MQ=255)
                 cagcagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCttttttta                                                                       <  1:8138841/93‑3 (MQ=255)
                 cagcagTATGATGATACAGTGAAATATCTGTCTGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCCCGGGCttttttta                                                                       <  2:6367527/93‑3 (MQ=255)
                   gcagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtttttttatt                                                                     <  2:364916/93‑5 (MQ=255)
                   gcagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtttttttatt                                                                     <  1:5649487/93‑5 (MQ=255)
                   gcagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtttttttatt                                                                     <  2:3404192/93‑5 (MQ=255)
                   gcagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtttttttatt                                                                     <  1:6661332/93‑5 (MQ=255)
                   gcagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCtttttttatt                                                                     <  2:2784316/93‑5 (MQ=255)
                      gTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTattatt                                                                   <  1:4726437/93‑1 (MQ=255)
                      gTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTattatt                                                                   <  2:1023394/93‑1 (MQ=255)
                       tATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTAttt                                                                  >  1:3442299/1‑93 (MQ=255)
                        aTGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTta                                                                 <  1:6202015/93‑1 (MQ=255)
                           cTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTtaata                                                              <  1:1056587/93‑1 (MQ=255)
                                                 cGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAAt                                        >  1:5810196/1‑93 (MQ=255)
                                                     aaaaaaTAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCAt                                    >  1:5628394/1‑93 (MQ=255)
                                                       aaaaTAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATcc                                  <  1:50484/93‑1 (MQ=255)
                                                             atTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGc                            >  2:4989555/1‑93 (MQ=255)
                                                              ttCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCt                           >  1:7386408/1‑93 (MQ=255)
                                                                       aaTTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACattat                  <  1:4061095/93‑1 (MQ=255)
                                                                                       tGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGat  >  2:4216208/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAGTATTCACGGGCTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGAT  >  NC_000913/4041564‑4041742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: