Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 379,245 (G)10→8 intergenic (‑119/+47) yaiN ← / ← yaiO putative alpha helix chain/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913379,2370G.100.0% 805.6 / NA 171intergenic (‑111/+56)yaiN/yaiOputative alpha helix chain/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (96/75);  total (96/75)
*NC_000913379,2380G.96.5% 749.1 / 13.3 171intergenic (‑112/+55)yaiN/yaiOputative alpha helix chain/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (3/3);  new base . (93/72);  total (96/75)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

Only 100 of 204 total aligned reads displayed.

GTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTT  >  NC_000913/379145‑379324
                                                                                            ||                                                                                       
gTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAg                                                                                          <  2:297848/93‑1 (MQ=255)
 tATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgg                                                                                         <  2:4335031/93‑1 (MQ=255)
 tATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgg                                                                                         >  1:5875667/1‑93 (MQ=255)
   ttCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg                                                                                       >  1:682519/1‑93 (MQ=255)
   ttCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg                                                                                       <  1:4926607/93‑1 (MQ=255)
   ttCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg                                                                                       <  1:2864178/93‑1 (MQ=255)
    tCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggg                                                                                      >  1:5286817/1‑93 (MQ=255)
      tataTGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggg                                                                                    <  2:3752249/93‑1 (MQ=255)
       atatGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggg                                                                                   >  2:57082/1‑93 (MQ=255)
        tatGTCAATGCATCCCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggc                                                                                  <  2:4569107/93‑2 (MQ=255)
         atGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggct                                                                                 <  2:5121452/93‑3 (MQ=255)
           gTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggctaa                                                                               >  1:487508/1‑89 (MQ=255)
                tGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGc                                                                        >  2:4904130/1‑93 (MQ=255)
                  cATCCCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAg                                                                      <  1:534542/93‑1 (MQ=255)
                  cATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAg                                                                      >  2:4442856/1‑93 (MQ=255)
                  cATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAg                                                                      <  1:6106997/93‑1 (MQ=255)
                   aTACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAgg                                                                     >  2:1919136/1‑93 (MQ=255)
                   aTACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAgg                                                                     >  2:2858566/1‑93 (MQ=255)
                    tACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAggg                                                                    >  2:5152236/1‑93 (MQ=255)
                      ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGaa                                                                  >  2:4992893/1‑93 (MQ=255)
                      ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGaa                                                                  <  2:2322641/93‑1 (MQ=255)
                      ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGaa                                                                  <  2:860791/93‑1 (MQ=255)
                       cccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAg                                                                 >  1:2722346/1‑93 (MQ=255)
                       cccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAg                                                                 >  2:6327884/1‑93 (MQ=255)
                        ccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAgg                                                                <  1:3613278/93‑1 (MQ=255)
                        ccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAgg                                                                >  2:2797362/1‑93 (MQ=255)
                         cccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgc                                                               >  1:2830075/1‑93 (MQ=255)
                         cccTATAGTATATAACACTGGAGAATAAAATTTATCAGGTGAATTTGCTCGAAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgc                                                               <  1:3687254/93‑1 (MQ=255)
                          ccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgcc                                                              >  2:403875/1‑93 (MQ=255)
                           cTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGCTAATCGGCAGGGAAGgcc                                                              >  2:1981108/1‑93 (MQ=255)
                           cTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgccc                                                             >  2:6391672/1‑92 (MQ=255)
                              taGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGccc                                                          <  1:3759612/93‑1 (MQ=255)
                              taGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGccc                                                          >  1:2938291/1‑93 (MQ=255)
                              taGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGccc                                                          >  2:2696964/1‑93 (MQ=255)
                               attatataACACGGGAGAATAAAATTTATCCGGTGAATGTGGTCGAAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGcccc                                                         <  1:1114151/91‑1 (MQ=255)
                               aGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGcccc                                                         >  1:4467620/1‑93 (MQ=255)
                               aGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGcccc                                                         <  2:2203886/93‑1 (MQ=255)
                               aGTATATAACACTGGAGAATAAAATTTATCCGGTAAATGTGGTCGGAAAACAAAGGGGAAAGGGGGGGGGCTAATCGGCAGGGAAGGCCGccc                                                          <  2:6028113/93‑1 (MQ=255)
                                 tatataACACGGAAAAAAAAAATTTATCGGGTGAATGTGGTCGAAAAAAAAAGAGAAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCgg                                                       <  2:3298093/93‑1 (MQ=255)
                                  atataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGa                                                      >  2:6299288/1‑93 (MQ=255)
                                  atataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGa                                                      >  1:4326110/1‑93 (MQ=255)
                                  atataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGACGCCCCggg                                                      >  2:3914843/1‑92 (MQ=255)
                                   tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGAt                                                     >  1:4772741/1‑93 (MQ=255)
                                   tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGAt                                                     <  1:1599356/93‑1 (MQ=255)
                                      aaCACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc                                                  <  2:2070689/93‑1 (MQ=255)
                                      aaCACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc                                                  <  2:6450860/93‑1 (MQ=255)
                                         acTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcggg                                               >  2:4185875/1‑93 (MQ=255)
                                          cTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggg                                              >  1:5237820/1‑92 (MQ=255)
                                          cTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggc                                              >  2:1338054/1‑93 (MQ=255)
                                           gggAGAATAAAATATATCCGGTGAATGTGGTGGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcg                                             <  1:3559338/92‑1 (MQ=255)
                                            ggAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGTCGCCCCGGATAgcgggggg                                            >  1:3499679/1‑93 (MQ=255)
                                            ggAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg                                            >  1:3096741/1‑93 (MQ=255)
                                            ggAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg                                            >  1:622188/1‑93 (MQ=255)
                                              agaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCa                                          <  2:3599339/93‑1 (MQ=255)
                                               gaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAg                                         >  2:4720804/1‑93 (MQ=255)
                                                aaTAAAATTTATCCGGTGAATGTGGTCGGAAACCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGa                                        >  1:2421527/1‑93 (MQ=255)
                                                 aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGaa                                       <  2:5298004/93‑1 (MQ=255)
                                                 aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGaa                                       <  1:1781266/93‑1 (MQ=255)
                                                  tAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAg                                     >  2:5614579/1‑93 (MQ=255)
                                                  tAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAg                                     >  1:1848132/1‑93 (MQ=255)
                                                  aaataTTTATCGGGAGAGTGTGGAGTGAAAACAAAGAGAAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAg                                     <  2:4657804/89‑1 (MQ=255)
                                                    aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGa                                   <  1:3221527/93‑1 (MQ=255)
                                                     aaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGaa                                  >  1:2152231/1‑93 (MQ=255)
                                                      aTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCAGCCCCGGATAGCGGGCGGCAGAAGGAAt                                 >  1:2079008/1‑93 (MQ=255)
                                                      aTTTATCCGGTGAATGGGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAAt                                 <  2:1354676/93‑1 (MQ=255)
                                                        ttATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCa                               <  1:1189168/93‑1 (MQ=255)
                                                          aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCCTATAGCGGGCGGCAGAAGGAATCAGa                             >  2:3526424/1‑93 (MQ=255)
                                                          aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCCGGTAGCGGGAGGCAGGAGGCATCAGa                             >  2:2456174/1‑93 (MQ=255)
                                                          aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCCCCCCCGATTGCGGGCGGCAAAAGGAATCaaa                             >  2:3457790/1‑91 (MQ=255)
                                                           tCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGaa                            <  1:5504252/93‑1 (MQ=255)
                                                            ccGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAAt                           >  2:4246317/1‑93 (MQ=255)
                                                              ggTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAAttt                         <  2:4119333/93‑1 (MQ=255)
                                                               gTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTc                        <  1:6447099/93‑1 (MQ=255)
                                                               gTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTc                        <  1:2652064/93‑1 (MQ=255)
                                                                tGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTcc                       <  2:1602299/93‑1 (MQ=255)
                                                                 gAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCa                      >  1:2576871/1‑93 (MQ=255)
                                                                 gAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCa                      >  1:1551239/1‑93 (MQ=255)
                                                                 gAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCa                      <  1:3414426/93‑1 (MQ=255)
                                                                   aTGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCGAgg                    >  2:4744563/1‑93 (MQ=255)
                                                                    tgtgGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGt                   >  2:1655692/1‑93 (MQ=255)
                                                                    tgtgGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGt                   <  1:5056049/93‑1 (MQ=255)
                                                                      tgGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCa                 <  2:2953487/93‑1 (MQ=255)
                                                                       ggTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAg                <  1:866479/93‑1 (MQ=255)
                                                                        gTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGGTAGCGGGCGGCAGAAGGGATCAGAATTTTCAGGGCAGa               >  1:1237725/1‑93 (MQ=255)
                                                                        gTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa               <  1:418876/93‑1 (MQ=255)
                                                                        gTCGGAAAACAAAGAGGAAA‑‑‑GGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGAc              <  1:4136955/93‑1 (MQ=255)
                                                                         tCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGAc              <  2:697434/93‑1 (MQ=255)
                                                                            gAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACggg           <  2:3185782/93‑1 (MQ=255)
                                                                             aaaaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGc          >  2:589994/1‑93 (MQ=255)
                                                                             aaaaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGc          >  1:751521/1‑93 (MQ=255)
                                                                               aaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGGAACAGAATTTCCAGGTCAGACGGGCTg        >  2:1213907/1‑93 (MQ=255)
                                                                               aaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTTCAGGGCAGACGGGCTg        >  1:3583941/1‑93 (MQ=255)
                                                                               aaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCCCCCCCGGTAGCGGGGGGGAGAAGGGAATAAAAATTTCCGGGCAGACgggggg        >  1:47506/1‑90 (MQ=255)
                                                                                  aaaGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCaa     >  2:1501140/1‑93 (MQ=255)
                                                                                   aaGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGGATCAGAATTTCCAGGTCAGAAGGGCTGCaat    >  1:1370430/1‑92 (MQ=255)
                                                                                   aaGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCCGATAGCGGGCGGCAGGAGGAATCAGAATTTCCAGGGCAGACGGGCTGCCAg    >  1:4562535/1‑93 (MQ=255)
                                                                                    agagGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGt   <  2:2572696/93‑1 (MQ=255)
                                                                                    agagGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGt   <  1:4356092/93‑1 (MQ=255)
                                                                                    agagGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCCGATAGCGGGCGGCAGAAGGAATCAGAATTTTCAGGTCCGACGGGGTGCCAGt   >  1:2348683/1‑93 (MQ=255)
                                                                                      agGAAAGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGtt  <  2:2305955/93‑1 (MQ=255)
                                                                                            ||                                                                                       
GTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTT  >  NC_000913/379145‑379324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: