Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,008,469 +G intergenic (+36/‑197) b4555 → / → yigM hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,008,4661.G99.4% 540.7 / ‑3.8 154intergenic (+33/‑200)b4555/yigMhypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base G (75/78);  total (76/78)
Fisher's exact test for biased strand distribution p-value = 4.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 155 total aligned reads displayed.

GAACTGGCTACAGCTGAAGGATTGATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGG‑‑AAAGCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGAAGTGATTGGTACTAATGCCGACGAC  >  NC_000913/4008398‑4008551
                                                                          |                                                                                         
aaaCTGGTCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACTGGATGACCGACGTCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATg                                                                       <  2:5137555/92‑1 (MQ=255)
 actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATggg                                                                     <  2:6238729/89‑1 (MQ=255)
 actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATggg                                                                     >  2:2876262/5‑93 (MQ=255)
 actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATggg                                                                     >  1:2061326/5‑93 (MQ=255)
  ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGc                                                                    >  2:3258484/4‑93 (MQ=255)
  ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGc                                                                    <  2:414326/90‑1 (MQ=255)
   tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCa                                                                   <  1:4044542/91‑1 (MQ=255)
   tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCa                                                                   >  1:2866698/3‑93 (MQ=255)
    gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAg                                                                  >  2:2165022/2‑93 (MQ=255)
    gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAg                                                                  >  1:4217619/2‑93 (MQ=255)
     ggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGt                                                                 <  2:4212740/93‑1 (MQ=255)
      gCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTg                                                                <  2:3894347/93‑1 (MQ=255)
        cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgc                                                               <  2:6266855/93‑2 (MQ=255)
        cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGCAAGGCTGCATTATGGGCAGTgc                                                               >  1:2241773/1‑92 (MQ=255)
         tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgcg                                                              >  1:1621121/1‑91 (MQ=255)
         tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTgcg                                                              >  1:2762028/1‑91 (MQ=255)
             gcgtGAAGGATTGTATTGCGTTGGGTGACGGAATGAACGACGCCGAAATGCTGTCAATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc                                                          <  1:1656708/90‑1 (MQ=255)
             gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacc                                                          >  1:5509161/3‑93 (MQ=255)
              ccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacca                                                         <  2:5886704/92‑1 (MQ=255)
              ccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCgcacca                                                         >  1:1682782/2‑93 (MQ=255)
               cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAg                                                        <  1:2215785/93‑1 (MQ=255)
                tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGc                                                       >  1:2156490/1‑93 (MQ=255)
                tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGc                                                       <  2:440743/93‑1 (MQ=255)
                 gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCg                                                      <  2:5212621/93‑1 (MQ=255)
                 gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCg                                                      >  2:2799496/1‑93 (MQ=255)
                   aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc                                                    <  2:2312465/93‑1 (MQ=255)
                   aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc                                                    <  2:1387586/93‑1 (MQ=255)
                   aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc                                                    <  1:4746228/93‑1 (MQ=255)
                   aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc                                                    <  2:4358748/93‑1 (MQ=255)
                    ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt                                                   <  2:6165831/93‑1 (MQ=255)
                    ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt                                                   <  1:4802295/93‑1 (MQ=255)
                    ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt                                                   <  2:1178316/93‑1 (MQ=255)
                    ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt                                                   <  1:5708665/93‑1 (MQ=255)
                                 tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt                                      <  1:5381833/89‑1 (MQ=255)
                                   tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc                                    <  1:3102204/91‑1 (MQ=255)
                                    ggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATccc                                   >  2:2321542/2‑93 (MQ=255)
                                     gtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCg                                  <  2:1706613/93‑1 (MQ=255)
                                       gACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAg                                >  1:2927373/1‑93 (MQ=255)
                                         cGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGcg                              >  2:606148/1‑92 (MQ=255)
                                         cGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCt                              <  2:2663374/93‑1 (MQ=255)
                                         cGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCt                              <  2:975712/93‑1 (MQ=255)
                                         cGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCt                              >  1:6227029/1‑93 (MQ=255)
                                          gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTg                            <  2:3208939/93‑1 (MQ=255)
                                          gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTg                            >  1:4029805/1‑93 (MQ=255)
                                          gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTg                            <  2:6035405/93‑1 (MQ=255)
                                          gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTg                            >  1:4985754/1‑93 (MQ=255)
                                           ggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGGCCTTCATCCCGAGCTgg                           >  2:1857379/1‑92 (MQ=255)
                                           ggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTgg                           >  2:4387737/1‑92 (MQ=255)
                                             aTGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTggaa                         <  1:5912240/93‑4 (MQ=255)
                                                aaCGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg                       >  2:6162777/1‑93 (MQ=255)
                                                aaCGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg                       >  2:4176227/1‑93 (MQ=255)
                                                aaCGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg                       <  2:4770873/93‑1 (MQ=255)
                                                 acgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa                      >  1:1306340/1‑93 (MQ=255)
                                                 acgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa                      <  1:2412012/93‑1 (MQ=255)
                                                   gacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt                    >  1:3019064/1‑93 (MQ=255)
                                                   gacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt                    >  2:1748516/1‑93 (MQ=255)
                                                   gacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGCGAtt                    >  2:675891/1‑93 (MQ=255)
                                                    acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg                   >  2:5834659/1‑93 (MQ=255)
                                                    acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg                   >  1:4063721/1‑93 (MQ=255)
                                                     cgCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTgg                  >  1:3716215/1‑93 (MQ=255)
                                                      gCCGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGt                 <  2:5885363/93‑1 (MQ=255)
                                                       ccGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTa                <  1:5983823/93‑1 (MQ=255)
                                                       ccGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTa                >  2:3383752/1‑93 (MQ=255)
                                                        cGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAc               >  1:4331359/1‑93 (MQ=255)
                                                        cGAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAc               <  1:4649788/93‑1 (MQ=255)
                                                         gAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt              >  1:1971070/1‑93 (MQ=255)
                                                         gAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt              <  2:3161757/93‑1 (MQ=255)
                                                         gAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt              >  1:3349964/1‑93 (MQ=255)
                                                         gAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt              >  2:5126113/1‑93 (MQ=255)
                                                         gAAATGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt              >  2:4819552/1‑93 (MQ=255)
                                                          aaaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTa             <  1:237725/93‑1 (MQ=255)
                                                          aaaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTa             >  2:3471036/1‑93 (MQ=255)
                                                           aaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa            <  2:1260781/93‑1 (MQ=255)
                                                           aaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa            >  2:2833463/1‑93 (MQ=255)
                                                           aaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa            >  1:3449673/1‑93 (MQ=255)
                                                           aaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa            >  2:5664663/1‑93 (MQ=255)
                                                           aaTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa            >  1:3853885/1‑93 (MQ=255)
                                                            aTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt           <  2:38543/93‑1 (MQ=255)
                                                            aTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt           >  1:52960/1‑93 (MQ=255)
                                                            aTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt           <  2:4115529/93‑1 (MQ=255)
                                                            aTGCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt           >  1:4072657/1‑93 (MQ=255)
                                                              gCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGc         <  1:1050943/93‑1 (MQ=255)
                                                              gCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGc         >  1:1587885/1‑93 (MQ=255)
                                                              gCTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGc         <  2:3063743/93‑1 (MQ=255)
                                                               cTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc        <  2:2061326/93‑1 (MQ=255)
                                                               cTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc        >  1:4874260/1‑93 (MQ=255)
                                                               cTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc        <  2:2232111/93‑1 (MQ=255)
                                                               cTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc        <  1:4084567/93‑1 (MQ=255)
                                                               cTGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc        <  1:5324798/93‑1 (MQ=255)
                                                                tGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg       <  2:2879411/93‑1 (MQ=255)
                                                                tGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg       >  2:5167090/1‑93 (MQ=255)
                                                                tGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg       <  1:6470595/93‑1 (MQ=255)
                                                                tGTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg       >  1:1407707/1‑93 (MQ=255)
                                                                 gTCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga      >  1:2757252/1‑93 (MQ=255)
                                                                  tCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac     >  2:3679439/1‑93 (MQ=255)
                                                                  tCGATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac     >  2:678886/1‑93 (MQ=255)
                                                                    gATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga   <  2:5894190/93‑1 (MQ=255)
                                                                    gATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga   <  1:5967797/93‑1 (MQ=255)
                                                                    gATGGCGGGG‑‑AAAGGCTGCATTATGGGCAGGGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTCATGCcgacga   >  1:1448784/1‑93 (MQ=255)
                                                                     aTGGCGGGTAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAGCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac  <  1:3603057/93‑1 (MQ=255)
                                                                          |                                                                                         
GAACTGGCTACAGCTGAAGGATTGATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGG‑‑AAAGCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGAAGTGATTGGTACTAATGCCGACGAC  >  NC_000913/4008398‑4008551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: