Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,143,101 T→C M164V (ATG→GTG)  rne ← RNase E

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,143,1010TC100.0% 632.2 / NA 183M164V (ATG→GTG) rneRNase E
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (111/72);  total (111/72)

Only 100 of 186 total aligned reads displayed.

TGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCATGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCGCGCGCG  >  NC_000913/1143011‑1143190
                                                                                          |                                                                                         
tGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGc                                                                                         >  2:3115873/1‑93 (MQ=255)
tGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGc                                                                                         >  2:134765/1‑93 (MQ=255)
tGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGc                                                                                         <  1:1698171/93‑1 (MQ=255)
 ggCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGcc                                                                                        <  2:1010308/93‑1 (MQ=255)
    ttCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTc                                                                                     <  2:3748164/93‑1 (MQ=255)
     tCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTcc                                                                                    >  2:3775495/1‑93 (MQ=255)
     tCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTcc                                                                                    <  1:4840480/93‑1 (MQ=255)
      cccAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCg                                                                                   <  1:4463739/93‑1 (MQ=255)
       ccAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCgg                                                                                  <  1:2303716/93‑1 (MQ=255)
       ccAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCgg                                                                                  >  2:6224394/1‑93 (MQ=255)
       ccAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCgg                                                                                  >  2:482040/1‑93 (MQ=255)
        cAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGc                                                                                 >  2:3688797/1‑93 (MQ=255)
         aGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCa                                                                                >  2:1649967/1‑93 (MQ=255)
         aGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCa                                                                                >  2:5883335/1‑93 (MQ=255)
         aGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCa                                                                                <  2:4677450/93‑1 (MQ=255)
          gtgtTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAg                                                                               >  2:1744595/1‑93 (MQ=255)
          gtgtTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAg                                                                               >  2:3937531/1‑93 (MQ=255)
           tgtTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGt                                                                              >  2:300097/1‑93 (MQ=255)
             tttCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTc                                                                            >  1:5691630/1‑93 (MQ=255)
             tttCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTc                                                                            <  1:1645796/93‑1 (MQ=255)
              ttCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCa                                                                           <  1:2572700/93‑1 (MQ=255)
                cAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAg                                                                         >  2:306863/1‑93 (MQ=255)
                  gACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGc                                                                       >  2:4246284/1‑93 (MQ=255)
                  gACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGc                                                                       <  2:4762198/93‑1 (MQ=255)
                  gACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGc                                                                       >  2:3223618/1‑93 (MQ=255)
                  gACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGc                                                                       >  2:1203483/1‑93 (MQ=255)
                   aCGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCt                                                                      >  1:2553645/1‑93 (MQ=255)
                    cGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAATGCtt                                                                     <  1:5616400/93‑1 (MQ=255)
                    cGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCtt                                                                     >  1:4720751/1‑93 (MQ=255)
                     ggAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTg                                                                    >  1:5707662/1‑93 (MQ=255)
                     ggAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGCGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAACGCTTg                                                                    >  1:5899181/1‑93 (MQ=255)
                      gAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGc                                                                   >  2:2206865/1‑93 (MQ=255)
                      gAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGc                                                                   >  1:1957063/1‑93 (MQ=255)
                      gAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGc                                                                   >  2:2555497/1‑93 (MQ=255)
                       aaGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGcc                                                                  <  1:1058331/93‑1 (MQ=255)
                        aGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCa                                                                 >  1:16306/1‑93 (MQ=255)
                        aGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCa                                                                 >  1:1043772/1‑93 (MQ=255)
                         gCTTAAATCCCATTGCAGCGCCTCATCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAg                                                                <  2:5657967/93‑1 (MQ=255)
                         gCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAg                                                                <  1:4436059/93‑1 (MQ=255)
                         gCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAg                                                                >  2:3327748/1‑93 (MQ=255)
                         gCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAg                                                                >  1:1380215/1‑93 (MQ=255)
                          cTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGt                                                               >  2:4383376/1‑93 (MQ=255)
                          cTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGt                                                               >  1:4809774/1‑93 (MQ=255)
                          cTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGt                                                               <  1:881998/93‑1 (MQ=255)
                            tAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGc                                                             <  1:4954546/93‑1 (MQ=255)
                            tAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGc                                                             <  2:643848/93‑1 (MQ=255)
                             aaaTCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGct                                                            <  2:5334924/93‑1 (MQ=255)
                              aaTCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGctt                                                           >  2:1772445/1‑93 (MQ=255)
                               aTCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGcttc                                                          >  1:1160607/1‑93 (MQ=255)
                                 cccATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGcttctt                                                        <  2:6204934/93‑1 (MQ=255)
                                  ccATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCttt                                                       >  1:5380173/1‑93 (MQ=255)
                                  ccATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCttt                                                       >  2:530374/1‑93 (MQ=255)
                                   cATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCtttt                                                      <  2:1991630/93‑1 (MQ=255)
                                    aTTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTa                                                     >  1:3809729/1‑93 (MQ=255)
                                     ttGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTaa                                                    >  2:1251985/1‑93 (MQ=255)
                                     ttGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTaa                                                    >  2:5479205/1‑93 (MQ=255)
                                       gCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAAtt                                                  <  1:2097752/93‑1 (MQ=255)
                                        cAGCGCCTCAGCAGATTTGCCGACGCCATCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTc                                                 >  2:4120904/1‑93 (MQ=255)
                                        cAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTc                                                 >  1:675694/1‑93 (MQ=255)
                                         aGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCg                                                >  2:5760121/1‑93 (MQ=255)
                                          gcgcCTCCGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCgg                                               >  1:5218360/1‑93 (MQ=255)
                                          gcgcCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCgg                                               >  1:1749678/1‑93 (MQ=255)
                                           cgcCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGt                                              <  2:1114048/93‑1 (MQ=255)
                                            gcCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTa                                             >  1:45391/1‑93 (MQ=255)
                                             ccTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTAc                                            <  1:2983093/93‑1 (MQ=255)
                                             ccTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTAc                                            >  2:5171062/1‑93 (MQ=255)
                                             ccTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTAc                                            <  2:3811446/93‑1 (MQ=255)
                                              cTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACg                                           <  2:1936203/93‑1 (MQ=255)
                                               tCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACgg                                          <  2:5184543/93‑1 (MQ=255)
                                                 agcagATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGgtc                                        >  2:2686934/1‑93 (MQ=255)
                                                 agcagATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGgtc                                        <  1:226024/93‑1 (MQ=255)
                                                  gcagATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGgtcg                                       >  1:2903615/1‑93 (MQ=255)
                                                  gcagATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACAgtcg                                       >  2:836061/1‑93 (MQ=255)
                                                     gATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGtcgtcg                                    >  1:3814247/1‑93 (MQ=255)
                                                     gATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGtcgtcg                                    >  1:3042929/1‑93 (MQ=255)
                                                      aTTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGc                                   <  2:2337169/93‑1 (MQ=255)
                                                       tttGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGGTTCTTTTAATTCGGTACGGTCGTCGcc                                  >  1:1238745/1‑93 (MQ=255)
                                                       tttGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGcc                                  <  2:743135/93‑1 (MQ=255)
                                                        ttGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCt                                 <  1:4037408/93‑1 (MQ=255)
                                                              aCGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATa                           >  1:5947506/1‑93 (MQ=255)
                                                               cGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATAc                          <  2:3579553/93‑1 (MQ=255)
                                                               cGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATAc                          >  2:5966269/1‑93 (MQ=255)
                                                                gCCAGCGGTGCGCACGATAATCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACg                         >  2:2646593/1‑93 (MQ=255)
                                                                gCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACg                         <  2:4958725/93‑1 (MQ=255)
                                                                gCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACg                         <  2:6093978/93‑1 (MQ=255)
                                                                 ccAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACgg                        >  2:2978630/1‑93 (MQ=255)
                                                                  cAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCACGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCCTCGATACCGc                       >  2:4594392/1‑93 (MQ=255)
                                                                    gCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCga                     >  1:3942783/1‑93 (MQ=255)
                                                                     cGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCgag                    >  1:3378361/1‑93 (MQ=255)
                                                                      ggTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCgaga                   >  1:1522273/1‑93 (MQ=255)
                                                                       gTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGaa                  >  2:4070002/1‑93 (MQ=255)
                                                                            cACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTACTTCGGTTCGGTCGTCGCCTTAGATACGGCGAGAAATGcc             >  1:4731668/1‑93 (MQ=255)
                                                                              cGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCAc           <  1:5078330/93‑1 (MQ=255)
                                                                                aTAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCAccc         >  1:5115389/1‑93 (MQ=255)
                                                                                 tAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCcg        <  2:5815231/93‑1 (MQ=255)
                                                                                 tAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCcg        <  2:5080022/93‑1 (MQ=255)
                                                                                    gCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCcgcgc     >  2:1490072/1‑93 (MQ=255)
                                                                                      cccACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCcgcgcgc   >  1:349515/1‑93 (MQ=255)
                                                                                      cccACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCcgcgcgc   >  2:244061/1‑93 (MQ=255)
                                                                                       ccACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTAGATACGGCGAGAAATGCCACCcgcgcgcg  >  1:6351548/1‑93 (MQ=255)
                                                                                          |                                                                                         
TGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCATGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCGCGCGCG  >  NC_000913/1143011‑1143190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: