Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,212,474 A→G intergenic (‑144/+77) ycgX ← / ← ycgE hypothetical protein/putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,212,4740AG99.5% 710.2 / ‑4.5 203intergenic (‑144/+77)ycgX/ycgEhypothetical protein/putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (83/119);  total (83/120)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.25e-01

Only 100 of 208 total aligned reads displayed.

TACCACTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAACGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAGGGGGCATG  >  NC_000913/1212385‑1212562
                                                                                         |                                                                                        
 aCCACTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGa                                                                                      >  1:6428494/1‑93 (MQ=255)
 aCCACTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGa                                                                                      >  1:4613180/1‑93 (MQ=255)
 aCCACTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGa                                                                                      >  2:1093059/1‑93 (MQ=255)
  ccACTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGAc                                                                                     <  2:3158628/93‑1 (MQ=255)
   cACTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGTAGCGGAcc                                                                                    <  1:6309531/93‑1 (MQ=255)
    aCTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCa                                                                                   <  1:2348469/93‑1 (MQ=255)
      ttCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGc                                                                                 >  2:4399762/1‑93 (MQ=255)
      ttCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGc                                                                                 >  1:3733929/1‑93 (MQ=255)
       tCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCt                                                                                <  2:1238236/93‑1 (MQ=255)
        taaTCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCtt                                                                               <  2:6089665/92‑2 (MQ=255)
         aaTCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTcc                                                                              <  1:1234176/93‑1 (MQ=255)
         aaTCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTcc                                                                              <  2:1184104/93‑1 (MQ=255)
          aTCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCg                                                                             >  2:3547858/1‑93 (MQ=255)
          aTCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCg                                                                             >  2:698704/1‑93 (MQ=255)
           tCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCgg                                                                            <  1:4925496/93‑1 (MQ=255)
            cTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGt                                                                           <  1:3986889/93‑1 (MQ=255)
              ggTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTAc                                                                         <  2:4819393/93‑1 (MQ=255)
                tCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGCGAGCATTTTGCAGCGGACCAGCTCCGGTACaa                                                                       >  1:1312921/1‑93 (MQ=255)
                 cTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACaaa                                                                      >  1:3647333/1‑93 (MQ=255)
                 cTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACaaa                                                                      >  2:614761/1‑93 (MQ=255)
                   gTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACg                                                                    >  2:4512750/1‑93 (MQ=255)
                    tCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGc                                                                   >  2:1125422/1‑93 (MQ=255)
                      cTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCtg                                                                 <  2:3805887/93‑1 (MQ=255)
                       tttGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCtgt                                                                <  2:2054776/93‑1 (MQ=255)
                       tttGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCtgt                                                                >  2:4142140/1‑93 (MQ=255)
                       tttGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCtgt                                                                <  2:5644336/93‑1 (MQ=255)
                       tttGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCtgt                                                                <  1:1828496/93‑1 (MQ=255)
                        ttGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCtgtt                                                               <  2:768714/93‑1 (MQ=255)
                          ggCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCtgttgt                                                             >  1:3762500/1‑93 (MQ=255)
                           gCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTtgtg                                                            <  2:3297118/93‑1 (MQ=255)
                            cTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTgg                                                           <  1:6473641/93‑1 (MQ=255)
                             tgtgATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTggg                                                          >  2:4788287/1‑93 (MQ=255)
                             tgtgATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTggg                                                          >  2:5022618/1‑93 (MQ=255)
                             tgtgATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTggg                                                          >  1:1361083/1‑93 (MQ=255)
                              gtgATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGt                                                         >  2:2652801/1‑93 (MQ=255)
                              gtgATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGt                                                         <  2:6234639/93‑1 (MQ=255)
                              gtgATATGTACAGAGTGCGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGt                                                         <  2:5247763/93‑1 (MQ=255)
                               tgATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGtt                                                        <  1:4989384/93‑1 (MQ=255)
                                gATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTc                                                       <  1:1148097/93‑1 (MQ=255)
                                 atatGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCa                                                      >  1:2762391/1‑93 (MQ=255)
                                  tatGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAg                                                     <  2:4941035/93‑1 (MQ=255)
                                   atGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGa                                                    <  2:935150/93‑1 (MQ=255)
                                       aCAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATtat                                                >  2:5755948/1‑93 (MQ=255)
                                        cAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATtata                                               >  2:5908413/1‑93 (MQ=255)
                                        cAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATtata                                               >  2:4203332/1‑93 (MQ=255)
                                         agagTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATaa                                              >  1:1500296/1‑93 (MQ=255)
                                          gagTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAAc                                             <  1:1877163/93‑1 (MQ=255)
                                           agTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACa                                            >  2:2288192/1‑93 (MQ=255)
                                            gtgtGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACAt                                           >  1:2671548/1‑93 (MQ=255)
                                              gtgATAGAGGGAATATCTGAATTCTCTCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTc                                         <  1:3455470/93‑1 (MQ=255)
                                              gtgATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTc                                         <  2:2156062/93‑1 (MQ=255)
                                               tgATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCt                                        <  1:5957309/93‑1 (MQ=255)
                                               tgATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCt                                        <  2:2997416/93‑1 (MQ=255)
                                                gATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTg                                       >  2:6325334/1‑93 (MQ=255)
                                                gATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCCGTTGTGGGTTCAGATTATAACATTCTg                                       >  1:165721/1‑93 (MQ=255)
                                                 aTAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGt                                      <  2:2604485/93‑1 (MQ=255)
                                                   agagGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCt                                    <  1:2920537/93‑1 (MQ=255)
                                                    gagGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTa                                   >  1:6204211/1‑93 (MQ=255)
                                                    gagGGAATATCTGAATTCTCCCGGGGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTa                                   >  2:5155771/1‑93 (MQ=255)
                                                     agGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTaa                                  <  2:5130173/93‑1 (MQ=255)
                                                     agGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTaa                                  <  1:727265/93‑1 (MQ=255)
                                                     agGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTaa                                  <  2:2202478/93‑1 (MQ=255)
                                                     agGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTaa                                  <  1:4290962/93‑1 (MQ=255)
                                                     agGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCCCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATGCTGTCTaa                                  <  2:2272752/93‑1 (MQ=255)
                                                       ggAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAgg                                >  1:3141920/1‑93 (MQ=255)
                                                        gAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAggg                               <  2:4607771/93‑1 (MQ=255)
                                                        gAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAggg                               >  1:4528899/1‑93 (MQ=255)
                                                        gAATATCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAggg                               <  1:3472925/93‑1 (MQ=255)
                                                          atatCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGc                             <  1:5413048/93‑1 (MQ=255)
                                                          atatCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGc                             >  1:5775615/1‑93 (MQ=255)
                                                           tatCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCg                            >  2:6004099/1‑93 (MQ=255)
                                                            atCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCgg                           <  1:706543/93‑1 (MQ=255)
                                                            atCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCgg                           <  1:6355854/93‑1 (MQ=255)
                                                            atCTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGCGCgg                           >  2:3065645/1‑93 (MQ=255)
                                                              cTGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGa                         <  1:1986038/93‑1 (MQ=255)
                                                               tGAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGAt                        >  2:2751147/1‑93 (MQ=255)
                                                                gAATTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATa                       <  1:4240458/93‑1 (MQ=255)
                                                                 aaTTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATaa                      >  2:1367922/1‑93 (MQ=255)
                                                                 aaTTCTCCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGATGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATaa                      <  1:5627671/93‑1 (MQ=255)
                                                                    tctcCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAgg                   <  2:3625542/93‑1 (MQ=255)
                                                                    tctcCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAgg                   <  1:5115355/93‑1 (MQ=255)
                                                                    tctcCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAgg                   >  2:5137561/1‑93 (MQ=255)
                                                                    tctcCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAgg                   <  2:2334422/93‑1 (MQ=255)
                                                                     ctcCCGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGt                  <  2:4908615/93‑1 (MQ=255)
                                                                       cccGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGa                <  2:2670343/93‑1 (MQ=255)
                                                                       cccGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGa                <  2:1639090/93‑1 (MQ=255)
                                                                        ccGGTGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGaa               >  1:1005867/1‑93 (MQ=255)
                                                                            tGAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTa           >  1:4566503/1‑93 (MQ=255)
                                                                             gAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAg          <  2:5050152/93‑1 (MQ=255)
                                                                             gAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAg          >  1:304411/1‑93 (MQ=255)
                                                                             gAGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTGCAGATTATACCATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAg          <  2:5525295/93‑1 (MQ=255)
                                                                              aGCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAgg         <  1:2175179/93‑1 (MQ=255)
                                                                               gCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAggg        <  2:2926793/93‑1 (MQ=255)
                                                                               gCATTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAggg        >  1:991433/1‑93 (MQ=255)
                                                                                 aTTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAggggg      <  2:3877518/93‑1 (MQ=255)
                                                                                 aTTTTGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAggggg      >  2:3059680/1‑93 (MQ=255)
                                                                                  ttttGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAGGGGGc     <  1:3060304/93‑1 (MQ=255)
                                                                                  ttttGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAGGGGGc     >  1:4778123/1‑93 (MQ=255)
                                                                                  ttttGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAGGGGGc     >  2:840489/1‑93 (MQ=255)
                                                                                     tGCAGCGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAGGGGGCATg  >  2:1480039/1‑93 (MQ=255)
                                                                                         |                                                                                        
TACCACTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTGAATTCTCCCGGTGAGCATTTTGCAACGGACCAGCTCCGGTACAAACGCTGTTGTGGGTTCAGATTATAACATTCTGTCTAAGGGGCGGGATAAAGGTGAAATTAGGGGGCATG  >  NC_000913/1212385‑1212562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: