Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,485,284 T→C R133R (CGT→CGC b4262 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,485,2840TC99.6% 877.7 / NA 253R133R (CGT→CGCb4262hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (132/120);  total (132/121)
Fisher's exact test for biased strand distribution p-value = 4.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 265 total aligned reads displayed.

CTGTCGGTGATGAAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGTAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACTTCGTCTACAT  >  NC_000913/4485195‑4485373
                                                                                         |                                                                                         
cTGTCGGTGATGAAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAAc                                                                                        >  1:4837899/1‑93 (MQ=255)
cTGTCGGTGATGAAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAAc                                                                                        <  2:4619741/93‑1 (MQ=255)
 tGTCGGTGATGAAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACt                                                                                       >  2:117246/1‑93 (MQ=255)
 tGTCGGTGATGAAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACt                                                                                       <  1:262374/93‑1 (MQ=255)
    cGGTGATGAAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTAcc                                                                                    <  1:3876317/93‑1 (MQ=255)
    cGGTGATGAAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTAcc                                                                                    <  2:3426206/93‑1 (MQ=255)
      gTGATGAAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGt                                                                                  <  2:5669985/93‑1 (MQ=255)
        gatgaAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTAGCGTgc                                                                                >  1:2286762/1‑93 (MQ=255)
        gatgaAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTgc                                                                                >  1:3971208/1‑93 (MQ=255)
           gaAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCa                                                                             >  1:566752/1‑93 (MQ=255)
            aaaaCCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAg                                                                            <  1:5186128/93‑1 (MQ=255)
            aaaaCCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAg                                                                            <  2:4983608/93‑1 (MQ=255)
              aaCCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCCACTACCGTGCGCAggg                                                                          >  2:70583/1‑92 (MQ=255)
              aaCCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGc                                                                          >  2:5198780/1‑93 (MQ=255)
              aaCCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGc                                                                          >  1:2337777/1‑93 (MQ=255)
              aaCCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGc                                                                          <  2:4824563/93‑1 (MQ=255)
              aaCCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGc                                                                          <  1:1498637/93‑1 (MQ=255)
               aCCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCg                                                                         <  1:4570661/93‑1 (MQ=255)
                ccGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGa                                                                        >  2:3247035/1‑93 (MQ=255)
                 cGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGAt                                                                       >  2:1365379/1‑93 (MQ=255)
                  gCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATg                                                                      >  2:3748855/1‑93 (MQ=255)
                   ccATTCCGCTGGTCTTGCTGACGATGCCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGt                                                                     <  2:4575007/93‑1 (MQ=255)
                    cATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTa                                                                    >  1:4976169/1‑93 (MQ=255)
                    cATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTa                                                                    >  2:3980437/1‑93 (MQ=255)
                     aTTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTAc                                                                   >  2:2598964/1‑93 (MQ=255)
                     aTTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTAc                                                                   >  2:2704863/1‑93 (MQ=255)
                     aTTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTAc                                                                   >  2:6459838/1‑93 (MQ=255)
                     aTTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTAc                                                                   >  1:1360404/1‑93 (MQ=255)
                     aTTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTAc                                                                   >  2:5520355/1‑93 (MQ=255)
                     aTTCCGCTGGTCGTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTAc                                                                   >  2:3465136/1‑93 (MQ=255)
                       tCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTAcgg                                                                 >  2:4111093/1‑93 (MQ=255)
                         cGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTAcggcg                                                               >  2:3205150/1‑93 (MQ=255)
                           cTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACggcggc                                                             >  1:5369357/1‑93 (MQ=255)
                           cTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACggcggc                                                             <  2:616882/93‑1 (MQ=255)
                           cTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACggcggc                                                             >  2:3336208/1‑93 (MQ=255)
                           cTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACggcggc                                                             <  1:6194433/93‑1 (MQ=255)
                            tGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCt                                                            >  2:1655309/1‑93 (MQ=255)
                            tGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCt                                                            <  1:5267547/93‑1 (MQ=255)
                               tCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGt                                                         >  1:2575128/1‑93 (MQ=255)
                                cTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGtt                                                        <  2:3006009/93‑1 (MQ=255)
                                cTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGtt                                                        <  1:1871284/93‑1 (MQ=255)
                                 ttGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTg                                                       >  2:188529/1‑93 (MQ=255)
                                    cTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGctc                                                    >  1:5924157/1‑93 (MQ=255)
                                    cTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGctc                                                    <  2:5782864/93‑1 (MQ=255)
                                    cTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGctc                                                    <  1:4554030/93‑1 (MQ=255)
                                     tGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGctct                                                   >  2:4635815/1‑93 (MQ=255)
                                      gACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGctctt                                                  >  1:6108689/1‑92 (MQ=255)
                                       aCGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGctctct                                                 >  2:1067373/1‑93 (MQ=255)
                                        cGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTa                                                >  1:651022/1‑93 (MQ=255)
                                         gATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTAc                                               <  1:4066986/93‑1 (MQ=255)
                                          aTGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTAcc                                              >  2:5425767/1‑93 (MQ=255)
                                           tGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTAccc                                             <  1:5121935/93‑1 (MQ=255)
                                           tGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTAccc                                             <  1:129709/93‑1 (MQ=255)
                                             gCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAg                                           <  1:1889685/93‑1 (MQ=255)
                                              cGATTGGTGAAGGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGc                                          <  1:4192684/93‑1 (MQ=255)
                                              cGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGc                                          <  1:2958762/93‑1 (MQ=255)
                                                 ttGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAg                                       <  1:5999055/93‑1 (MQ=255)
                                                 ttGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAg                                       >  1:5905963/1‑93 (MQ=255)
                                                 ttGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAg                                       >  2:1532038/1‑93 (MQ=255)
                                                  tGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAgg                                      >  2:2341134/1‑93 (MQ=255)
                                                   ggCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGTAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGc                                     <  2:727995/93‑1 (MQ=255)
                                                    gCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCt                                    <  1:2983736/93‑1 (MQ=255)
                                                    gCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCt                                    <  1:4763420/93‑1 (MQ=255)
                                                    gCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCt                                    <  2:93338/93‑1 (MQ=255)
                                                      gAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTa                                  >  1:551574/1‑93 (MQ=255)
                                                      gAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTa                                  <  1:642410/93‑1 (MQ=255)
                                                       aaTGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTAt                                 >  2:1802381/1‑93 (MQ=255)
                                                       aaTGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTAt                                 <  1:4276154/93‑1 (MQ=255)
                                                        aTGGGTCGCGCCGCAGGGGGGGCAGATGGCGGGCACCTACCGTGGCCAGGGGTGGACCGGCGCCCGGTTGCTTCCTACCCACAAGGGCTTTTg                                >  2:387347/1‑93 (MQ=255)
                                                        aTGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATg                                >  2:2844056/1‑93 (MQ=255)
                                                        aTGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATg                                <  1:999679/93‑1 (MQ=255)
                                                          gggTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATggg                              >  1:3780954/1‑93 (MQ=255)
                                                           ggTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGc                             >  2:4535601/1‑93 (MQ=255)
                                                           ggTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGc                             <  2:2047443/93‑1 (MQ=255)
                                                            gTCGCGCCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCg                            <  1:1168939/93‑1 (MQ=255)
                                                               gcgcCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGaaa                         <  2:5852319/93‑1 (MQ=255)
                                                               gcgcCGCAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGaaa                         <  2:1488631/93‑1 (MQ=255)
                                                                cgccgcAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAg                        <  2:4596966/93‑1 (MQ=255)
                                                                 gccgcAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGa                       >  1:2094318/1‑93 (MQ=255)
                                                                  ccgcAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGAt                      <  1:1699801/93‑1 (MQ=255)
                                                                   cgcAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATg                     <  1:1082559/93‑1 (MQ=255)
                                                                   cgcAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATg                     >  2:5804459/1‑93 (MQ=255)
                                                                    gcAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATgg                    >  2:2368359/1‑93 (MQ=255)
                                                                    gcAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATgg                    >  2:1331394/1‑93 (MQ=255)
                                                                     cAGGGCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGc                   >  2:4059289/1‑93 (MQ=255)
                                                                       gggCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGcaa                 >  1:4373839/1‑93 (MQ=255)
                                                                       gggCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGcaa                 >  1:431792/1‑93 (MQ=255)
                                                                        ggCGAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGcaac                >  1:253224/1‑93 (MQ=255)
                                                                          ggAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGcaacaa              <  1:3511428/92‑1 (MQ=255)
                                                                           gAGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCaacaac             <  2:6341818/93‑1 (MQ=255)
                                                                            aGCAGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACt            <  2:6387659/93‑1 (MQ=255)
                                                                             gCAGATCGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACtt           <  2:154004/93‑1 (MQ=255)
                                                                               aGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACTTCg         >  1:2176233/1‑93 (MQ=255)
                                                                               aGATGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTCATGGGCGAAAGATGGCAACAACTTCg         >  2:2623443/1‑93 (MQ=255)
                                                                                gATGGCTCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACTTCGt        <  2:1235521/93‑1 (MQ=255)
                                                                                 aTGGCGCGCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACTTCGTc       >  2:287297/1‑93 (MQ=255)
                                                                                     cgcgCAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACTTCGTCTACa   <  1:2725903/93‑1 (MQ=255)
                                                                                      gcgcAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACTTCGTCTACAt  >  1:660478/1‑93 (MQ=255)
                                                                                      gcgcAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACTTCGTCTACAt  >  2:4362730/1‑93 (MQ=255)
                                                                                      gcgcAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACTTCGTCTACAt  <  1:1770507/93‑1 (MQ=255)
                                                                                         |                                                                                         
CTGTCGGTGATGAAAACCGCCATTCCGCTGGTCTTGCTGACGATGGCGATTGGCGAATGGGTCGCGCCGCAGGGCGAGCAGATGGCGCGTAACTACCGTGCGCAGGCGATGTACGGCGGCTCGTTGCTCTCTACCCAGCAAGGCTTATGGGCGAAAGATGGCAACAACTTCGTCTACAT  >  NC_000913/4485195‑4485373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: