Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,001,486 2 bp→GC coding (316‑317/903 nt) rarD ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,001,4860CG100.0% 683.1 / NA 196R106A (CGG→GCG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (115/81);  total (115/81)
*NC_0009134,001,4870GC100.0% 680.7 / NA 196R106A (CGG→GCG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (115/81);  total (115/81)

Only 100 of 200 total aligned reads displayed.

AGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAA  >  NC_000913/4001399‑4001572
                                                                                       ||                                                                                     
agccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTcc                                                                                   >  1:3565204/1‑93 (MQ=255)
 gccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                                                                                  >  1:1107970/1‑93 (MQ=255)
 gccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                                                                                  <  1:5443267/93‑1 (MQ=255)
 gccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                                                                                  <  2:1420406/93‑1 (MQ=255)
  ccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAg                                                                                 >  1:2607167/1‑93 (MQ=255)
   caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                                                                                >  2:2401958/1‑93 (MQ=255)
    aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa                                                                               >  1:4252035/1‑93 (MQ=255)
    aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa                                                                               <  2:4593125/93‑1 (MQ=255)
      tGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCata                                                                             <  1:2386905/93‑1 (MQ=255)
       gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat                                                                            >  2:4823822/1‑93 (MQ=255)
        cATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATg                                                                           <  1:5879530/93‑1 (MQ=255)
         aTCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTACCCAAGGCTCGCTTCCAGCATATgg                                                                          <  2:786613/93‑1 (MQ=255)
              gcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt                                                                     >  1:1227008/1‑93 (MQ=255)
              gcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt                                                                     <  2:3816149/93‑1 (MQ=255)
              gcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt                                                                     <  2:5493030/93‑1 (MQ=255)
              gcggAATCGCACGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt                                                                     >  1:769867/1‑93 (MQ=255)
               cggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAGCCAAGGCTCGCTTCCAGCATATGGTGATTg                                                                    <  1:462469/93‑1 (MQ=255)
                ggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGt                                                                   >  2:3132663/1‑93 (MQ=255)
                ggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGt                                                                   <  1:1722696/93‑1 (MQ=255)
                 gAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGtt                                                                  >  2:937020/1‑93 (MQ=255)
                      gctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCg                                                             >  2:1244871/3‑93 (MQ=255)
                        tCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGcc                                                           >  2:1172238/1‑93 (MQ=255)
                        tCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGcc                                                           >  1:5704805/1‑93 (MQ=255)
                        tCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAGTGTTCACCGcc                                                           >  2:3436029/1‑93 (MQ=255)
                         cGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGccc                                                          <  1:4376874/93‑1 (MQ=255)
                         cGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGccc                                                          >  1:4845146/1‑93 (MQ=255)
                         cGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGccc                                                          <  1:1923982/93‑1 (MQ=255)
                          gCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCa                                                         <  2:3487879/93‑1 (MQ=255)
                              aGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAATCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAACGCCCAGATa                                                     >  2:1797944/1‑93 (MQ=255)
                              aGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATa                                                     >  2:1575231/1‑93 (MQ=255)
                              aGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATa                                                     >  2:62217/1‑93 (MQ=255)
                                  aaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACa                                                 >  2:2883811/1‑93 (MQ=255)
                                  aaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACa                                                 <  2:1031710/93‑1 (MQ=255)
                                  aaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACa                                                 >  2:1489723/1‑93 (MQ=255)
                                  aaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACa                                                 >  2:4162779/1‑93 (MQ=255)
                                   aaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAg                                                >  2:4205512/1‑93 (MQ=255)
                                   aaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAg                                                <  2:1935687/93‑1 (MQ=255)
                                    atcatcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGt                                               >  2:791580/1‑93 (MQ=255)
                                    atcatcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGt                                               >  1:834206/1‑93 (MQ=255)
                                     tcatcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTa                                              <  1:1687446/93‑1 (MQ=255)
                                     tcatcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTa                                              >  2:3694337/1‑93 (MQ=255)
                                        tcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGcc                                           <  1:972322/93‑1 (MQ=255)
                                        tcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAAGGTGATTGTTCACCGCCCAGATAAACAGTAGcc                                           >  2:5466056/1‑93 (MQ=255)
                                           ccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGt                                        <  1:3621077/93‑1 (MQ=255)
                                           ccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGt                                        <  1:2948136/93‑1 (MQ=255)
                                           ccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAAATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGt                                        >  1:1407379/1‑93 (MQ=255)
                                            cAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGtt                                       >  1:3107246/1‑93 (MQ=255)
                                            cAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGtt                                       >  1:6202890/1‑93 (MQ=255)
                                            cAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGtt                                       >  2:5303266/1‑93 (MQ=255)
                                            cAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGtt                                       <  1:5195194/93‑1 (MQ=255)
                                              gCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGc                                     <  2:3731582/93‑1 (MQ=255)
                                              gCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACAGCCCAGATAAACAGTAGCCAGTTGc                                     >  1:6333558/1‑93 (MQ=255)
                                                acaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGcca                                   >  2:5668510/1‑93 (MQ=255)
                                                  aaTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacc                                 <  1:3007812/93‑1 (MQ=255)
                                                   aTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacca                                >  2:6297917/1‑93 (MQ=255)
                                                   aTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacca                                >  1:4526642/1‑93 (MQ=255)
                                                    tGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCaa                               >  2:6086783/1‑93 (MQ=255)
                                                    tGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCaa                               >  2:4608514/1‑93 (MQ=255)
                                                      ttCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATc                             <  1:3511778/93‑1 (MQ=255)
                                                      ttCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATc                             <  1:2194263/93‑1 (MQ=255)
                                                      ttCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATc                             <  1:5912629/93‑1 (MQ=255)
                                                       tCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCa                            >  2:2495391/1‑93 (MQ=255)
                                                        cACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAg                           >  1:5794707/1‑93 (MQ=255)
                                                         aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc                          >  1:2804911/1‑93 (MQ=255)
                                                         aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc                          >  1:2775974/1‑93 (MQ=255)
                                                          ccAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa                         >  2:889215/1‑93 (MQ=255)
                                                            aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg                       >  1:1294392/1‑93 (MQ=255)
                                                            aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg                       >  1:3073994/1‑93 (MQ=255)
                                                            aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg                       >  2:2718552/1‑93 (MQ=255)
                                                             gCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACgg                      >  1:3831240/1‑93 (MQ=255)
                                                             gCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACgg                      <  2:2308969/93‑1 (MQ=255)
                                                              cGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGc                     >  1:2493796/1‑93 (MQ=255)
                                                              cGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGc                     <  2:4751483/93‑1 (MQ=255)
                                                               gggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCa                    >  1:4981296/1‑93 (MQ=255)
                                                               gggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCa                    >  2:5720427/1‑93 (MQ=255)
                                                                 gTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCaga                  <  2:2809524/93‑1 (MQ=255)
                                                                 gTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCaga                  <  2:184420/93‑1 (MQ=255)
                                                                 gTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCaga                  <  2:5984161/93‑1 (MQ=255)
                                                                  ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag                 <  2:6138446/93‑1 (MQ=255)
                                                                   taataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAgaga                >  1:824119/1‑93 (MQ=255)
                                                                    aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc               <  1:4627234/93‑1 (MQ=255)
                                                                    aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc               <  2:5285962/93‑1 (MQ=255)
                                                                     ataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACt              >  2:4070833/1‑93 (MQ=255)
                                                                       aaaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGc            >  2:4687865/1‑93 (MQ=255)
                                                                       aaaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGc            <  1:4904893/93‑1 (MQ=255)
                                                                        aaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGcc           >  2:5205939/1‑93 (MQ=255)
                                                                        aaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGcc           >  1:5253978/1‑93 (MQ=255)
                                                                        aaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTCTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGcc           >  1:1803668/1‑93 (MQ=255)
                                                                         aGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCa          <  2:2889191/93‑1 (MQ=255)
                                                                         aGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCa          <  1:5989759/93‑1 (MQ=255)
                                                                         aGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCa          <  1:6103155/93‑1 (MQ=255)
                                                                         aGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCa          >  2:1615761/1‑93 (MQ=255)
                                                                          gTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAg         >  2:2203853/1‑93 (MQ=255)
                                                                            aaCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCa       >  2:6323342/1‑93 (MQ=255)
                                                                              ccAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATa     >  1:4599794/1‑93 (MQ=255)
                                                                              ccAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATa     >  1:4008277/1‑93 (MQ=255)
                                                                               cAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaa    <  2:5395548/93‑1 (MQ=255)
                                                                                aaGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaa   >  1:2528523/1‑93 (MQ=255)
                                                                                aaGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaa   >  2:2394358/1‑93 (MQ=255)
                                                                                aaGGCTCGCTTCCAGCATATGGTGATTGCTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGTACGGCAGAGACTGTCAGCATaaa   >  1:5653760/1‑93 (MQ=255)
                                                                                       ||                                                                                     
AGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAA  >  NC_000913/4001399‑4001572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: