#=GENOME_DIFF 1.0 #=CREATED 11:07:27 17 Jan 2023 #=PROGRAM breseq 0.35.4 revision f352f80f4bc9 #=COMMAND /usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 2 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/MG1665_NC_000913_1.gb /var/alemutpipe-outputs/good/SRR4302534_R1.good.fq /var/alemutpipe-outputs/good/SRR4302534_R2.good.fq #=REFSEQ /var/data/MG1665_NC_000913_1.gb #=READSEQ /var/alemutpipe-outputs/good/SRR4302534_R1.good.fq #=READSEQ /var/alemutpipe-outputs/good/SRR4302534_R2.good.fq #=CONVERTED-BASES 1204945300 #=CONVERTED-READS 12958910 #=INPUT-BASES 1204945300 #=INPUT-READS 12958910 #=MAPPED-BASES 1166542183 #=MAPPED-READS 12551609 SNP 1 858 NC_000913 144 G SNP 2 859 NC_000913 6610 A SNP 3 860 NC_000913 11000 C SNP 4 861 NC_000913 11729 C SNP 5 862 NC_000913 28729 T SNP 6 863 NC_000913 30594 T SNP 7 864 NC_000913 34913 T SNP 8 865 NC_000913 38389 T SNP 9 866 NC_000913 49165 C SNP 10 867 NC_000913 66528 C SUB 11 1890,1902 NC_000913 66533 3540 CCCGAGACCCGCACGCGTCGACCTGCA SNP 12 868 NC_000913 70289 T SNP 13 870 NC_000913 78003 C SNP 14 871 NC_000913 83095 G INS 15 872 NC_000913 87311 G repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=G SNP 16 873 NC_000913 105160 C SNP 17 874 NC_000913 107212 G SNP 18 875 NC_000913 108743 C SNP 19 876 NC_000913 111615 C SNP 20 877 NC_000913 134969 G SNP 21 878 NC_000913 138226 G SNP 22 879 NC_000913 138888 C SNP 23 880 NC_000913 147141 G SNP 24 881 NC_000913 148627 T SNP 25 882 NC_000913 148799 A SNP 26 883 NC_000913 156827 G SNP 27 884 NC_000913 159762 G SNP 28 885 NC_000913 171718 T SNP 29 886 NC_000913 182747 G SNP 30 887 NC_000913 196422 G SNP 31 888 NC_000913 202345 C SNP 32 889 NC_000913 214779 G SNP 33 890 NC_000913 219130 G SNP 34 891 NC_000913 231829 C SNP 35 892 NC_000913 235988 C SNP 36 893 NC_000913 241745 G SNP 37 894 NC_000913 253831 C SNP 38 895 NC_000913 254298 C SNP 39 896 NC_000913 256955 C SNP 40 897 NC_000913 260240 A SNP 41 898 NC_000913 264081 C SNP 42 899 NC_000913 269425 G SNP 43 900 NC_000913 272747 C SNP 44 901 NC_000913 276473 C SNP 45 902 NC_000913 283609 G SNP 46 903 NC_000913 294479 C SNP 47 904 NC_000913 296697 G SNP 48 905 NC_000913 307659 C SNP 49 906 NC_000913 316529 A SNP 50 907 NC_000913 318936 T SNP 51 908 NC_000913 320122 C SNP 52 909 NC_000913 323407 G SNP 53 910 NC_000913 334238 C SNP 54 911 NC_000913 338761 A SNP 55 912 NC_000913 342649 C SNP 56 913 NC_000913 358949 G SNP 57 914 NC_000913 363169 G SNP 58 915 NC_000913 368911 A SNP 59 916 NC_000913 376616 G DEL 60 917,918 NC_000913 379245 2 repeat_length=1 repeat_new_copies=8 repeat_ref_copies=10 repeat_seq=G SNP 61 920 NC_000913 394595 C SNP 62 921 NC_000913 400205 G SNP 63 922 NC_000913 403250 G SNP 64 923 NC_000913 406304 C SNP 65 924 NC_000913 409858 G SNP 66 925 NC_000913 418805 G SNP 67 926 NC_000913 433850 G SNP 68 927 NC_000913 434599 C SNP 69 928 NC_000913 434687 G SNP 70 929 NC_000913 440252 G SNP 71 930 NC_000913 440417 T SNP 72 931 NC_000913 457312 C SNP 73 932 NC_000913 459573 G SNP 74 933 NC_000913 481922 C SNP 75 934 NC_000913 484107 G SNP 76 935 NC_000913 499456 G DEL 77 936 NC_000913 500396 1 repeat_length=1 repeat_new_copies=5 repeat_ref_copies=6 repeat_seq=A SNP 78 937 NC_000913 502653 T DEL 79 938 NC_000913 509606 1 repeat_length=1 repeat_new_copies=5 repeat_ref_copies=6 repeat_seq=T DEL 80 939 NC_000913 513159 1 repeat_length=1 repeat_new_copies=6 repeat_ref_copies=7 repeat_seq=A SNP 81 940 NC_000913 517074 G SNP 82 941 NC_000913 518231 C SNP 83 942 NC_000913 522693 C SNP 84 943 NC_000913 527085 G SNP 85 944 NC_000913 528763 C SNP 86 945 NC_000913 531406 T SNP 87 946 NC_000913 536980 G SNP 88 947 NC_000913 542052 G SNP 89 948 NC_000913 547694 G INS 90 949 NC_000913 547835 G SNP 91 950 NC_000913 552300 T SNP 92 951 NC_000913 556636 G SNP 93 952 NC_000913 562546 G INS 94 969 NC_000913 577681 C repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=C SNP 95 970 NC_000913 578027 C SNP 96 1021 NC_000913 612751 C SNP 97 1022 NC_000913 618600 G SNP 98 1023 NC_000913 621553 G SNP 99 1024 NC_000913 624133 C SNP 100 1025 NC_000913 638137 G SNP 101 1026 NC_000913 650672 T SNP 102 1027 NC_000913 659755 A SNP 103 1028 NC_000913 670751 A SNP 104 1029 NC_000913 683225 G SNP 105 1030 NC_000913 684216 G SNP 106 1031 NC_000913 684796 G SNP 107 1032 NC_000913 697801 G SNP 108 1033 NC_000913 704130 G SNP 109 1034 NC_000913 704236 C SNP 110 1035 NC_000913 704311 G SNP 111 1036 NC_000913 708421 A SNP 112 1037 NC_000913 709321 G SNP 113 1038 NC_000913 713902 G SNP 114 1039 NC_000913 715139 C SNP 115 1040 NC_000913 716521 G SNP 116 1041 NC_000913 719820 G SNP 117 1042 NC_000913 720776 C SNP 118 1043 NC_000913 729698 G SNP 119 1044 NC_000913 745155 G SNP 120 1045 NC_000913 746390 G SNP 121 1046 NC_000913 751748 T SNP 122 1047 NC_000913 753753 C SNP 123 1048 NC_000913 756426 G SNP 124 1049 NC_000913 763352 G SNP 125 1050 NC_000913 765778 T SNP 126 1051 NC_000913 784126 G SNP 127 1052 NC_000913 791797 C SNP 128 1053 NC_000913 816466 C SNP 129 1054 NC_000913 817223 C SNP 130 1055 NC_000913 831133 C SNP 131 1056 NC_000913 844809 G SNP 132 1057 NC_000913 847139 T SNP 133 1058 NC_000913 850482 T SNP 134 1059 NC_000913 866086 A SNP 135 1060 NC_000913 866582 G SNP 136 1061 NC_000913 867637 C SNP 137 1062 NC_000913 878307 G SNP 138 1063 NC_000913 881233 C SNP 139 1064 NC_000913 888260 G SNP 140 1065 NC_000913 899581 T SNP 141 1066 NC_000913 905792 G SNP 142 1067 NC_000913 914422 G SNP 143 1068 NC_000913 914564 C SNP 144 1069 NC_000913 928190 A SNP 145 1070 NC_000913 934731 G SNP 146 1071 NC_000913 946689 G SNP 147 1072 NC_000913 961423 G SNP 148 1073 NC_000913 962413 G SNP 149 1074 NC_000913 969158 T SNP 150 1075 NC_000913 974875 T SNP 151 1076 NC_000913 976763 A SNP 152 1077 NC_000913 981066 T SNP 153 1078 NC_000913 981566 T INS 154 1079 NC_000913 1003383 G repeat_length=1 repeat_new_copies=8 repeat_ref_copies=7 repeat_seq=G SNP 155 1080 NC_000913 1010324 G SNP 156 1081 NC_000913 1015850 C SNP 157 1082 NC_000913 1016180 G SNP 158 1083 NC_000913 1019358 C SNP 159 1084 NC_000913 1024792 A SNP 160 1085 NC_000913 1032328 G SNP 161 1086 NC_000913 1038386 C SNP 162 1087 NC_000913 1049079 C DEL 163 1088 NC_000913 1051163 1 SNP 164 1089 NC_000913 1053820 C SNP 165 1090 NC_000913 1056041 G SNP 166 1091 NC_000913 1061451 G SNP 167 1092 NC_000913 1062796 G SNP 168 1093 NC_000913 1064328 G SNP 169 1094 NC_000913 1065252 C SNP 170 1095 NC_000913 1066017 C SNP 171 1096 NC_000913 1074187 C SNP 172 1097 NC_000913 1086330 C SNP 173 1098 NC_000913 1090676 G SNP 174 1099 NC_000913 1098156 G SNP 175 1100 NC_000913 1119304 C SNP 176 1101 NC_000913 1130725 G SNP 177 1102 NC_000913 1141015 C SNP 178 1103 NC_000913 1142917 C SNP 179 1104 NC_000913 1143101 C SNP 180 1105 NC_000913 1147697 G SNP 181 1106 NC_000913 1154920 T SNP 182 1107 NC_000913 1155780 G SNP 183 1108 NC_000913 1156390 G SNP 184 1109 NC_000913 1158718 C SNP 185 1110 NC_000913 1167180 G SNP 186 1111 NC_000913 1175607 G SNP 187 1112 NC_000913 1184516 G SNP 188 1113 NC_000913 1192497 G SNP 189 1114 NC_000913 1199211 C SNP 190 1115 NC_000913 1202176 C SNP 191 1116 NC_000913 1202871 G INS 192 1117 NC_000913 1207165 G repeat_length=1 repeat_new_copies=8 repeat_ref_copies=7 repeat_seq=G SNP 193 1118 NC_000913 1210786 G SNP 194 1119 NC_000913 1212474 G SNP 195 1120 NC_000913 1213846 G SNP 196 1121 NC_000913 1220688 T SNP 197 1122 NC_000913 1235692 C SNP 198 1123 NC_000913 1238083 G SNP 199 1124 NC_000913 1252715 G SNP 200 1127 NC_000913 1279054 G SNP 201 1128 NC_000913 1282811 C SNP 202 1129 NC_000913 1302782 G SNP 203 1130 NC_000913 1305135 C SNP 204 1131 NC_000913 1323486 T SNP 205 1132 NC_000913 1329903 G SNP 206 1133 NC_000913 1330060 G SNP 207 1134 NC_000913 1335418 G SNP 208 1135 NC_000913 1342604 A SNP 209 1136 NC_000913 1348410 G SNP 210 1137 NC_000913 1354431 C SNP 211 1138 NC_000913 1358270 A SNP 212 1139 NC_000913 1362462 C SNP 213 1140 NC_000913 1372245 G SNP 214 1141 NC_000913 1383611 G SNP 215 1142 NC_000913 1391027 G SNP 216 1143 NC_000913 1396204 C SNP 217 1144 NC_000913 1397365 G SNP 218 1145 NC_000913 1408072 G INS 219 1146 NC_000913 1415996 T repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=T SNP 220 1147 NC_000913 1428051 A SNP 221 1148 NC_000913 1442757 T SNP 222 1149 NC_000913 1445328 G SNP 223 1150 NC_000913 1445862 C SNP 224 1151 NC_000913 1456536 G SNP 225 1152 NC_000913 1457617 C SNP 226 1153 NC_000913 1460324 G SNP 227 1154 NC_000913 1482256 T SNP 228 1155 NC_000913 1492778 G SNP 229 1156 NC_000913 1497509 G SNP 230 1157 NC_000913 1503894 C SNP 231 1158 NC_000913 1506198 A SNP 232 1159 NC_000913 1512523 G SNP 233 1160 NC_000913 1520878 G SNP 234 1161 NC_000913 1520926 G SNP 235 1162 NC_000913 1521583 T SNP 236 1163 NC_000913 1533898 G SNP 237 1164 NC_000913 1535053 G SNP 238 1165 NC_000913 1538045 A SNP 239 1166 NC_000913 1545666 G SNP 240 1167 NC_000913 1548006 T SNP 241 1169 NC_000913 1548911 C INS 242 1170 NC_000913 1553730 G repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=G SNP 243 1171 NC_000913 1571055 C SNP 244 1172 NC_000913 1585075 G SNP 245 1173 NC_000913 1586583 C DEL 246 1174 NC_000913 1592156 1 repeat_length=1 repeat_new_copies=7 repeat_ref_copies=8 repeat_seq=C SNP 247 1175 NC_000913 1603543 C SNP 248 1176 NC_000913 1605226 A SNP 249 1177 NC_000913 1607710 G SNP 250 1178 NC_000913 1608034 G SNP 251 1179 NC_000913 1609760 A SNP 252 1180 NC_000913 1616532 A SNP 253 1194 NC_000913 1636465 C SNP 254 1195 NC_000913 1650355 C SNP 255 1196 NC_000913 1652626 C SNP 256 1197 NC_000913 1668733 G SNP 257 1198 NC_000913 1671621 G SNP 258 1199 NC_000913 1672529 C SNP 259 1200 NC_000913 1672622 C SNP 260 1201 NC_000913 1679869 G SNP 261 1202 NC_000913 1680793 C SNP 262 1203 NC_000913 1681154 C INS 263 1204 NC_000913 1683566 C repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=C SNP 264 1205 NC_000913 1705052 C SNP 265 1206 NC_000913 1715389 A SNP 266 1207 NC_000913 1715713 C SNP 267 1208 NC_000913 1718191 G SNP 268 1209 NC_000913 1722918 A SNP 269 1210 NC_000913 1728403 C SNP 270 1211 NC_000913 1730968 C SNP 271 1212 NC_000913 1739051 G SUB 272 1213,1214 NC_000913 1741574 2 GA SNP 273 1215 NC_000913 1746888 C SNP 274 1216 NC_000913 1747993 C SNP 275 1217 NC_000913 1755127 C SNP 276 1218 NC_000913 1764932 G SNP 277 1219 NC_000913 1766232 C SNP 278 1220 NC_000913 1767503 G SNP 279 1221 NC_000913 1768131 C SNP 280 1222 NC_000913 1782304 T SNP 281 1223 NC_000913 1799252 C SNP 282 1224 NC_000913 1804010 G SNP 283 1225 NC_000913 1812482 C SNP 284 1226 NC_000913 1831123 C SNP 285 1227 NC_000913 1833580 C SNP 286 1228 NC_000913 1841922 C SNP 287 1229 NC_000913 1846045 C SNP 288 1230 NC_000913 1848059 C SNP 289 1231 NC_000913 1852569 C SNP 290 1232 NC_000913 1858723 T SNP 291 1233 NC_000913 1860370 C SNP 292 1234 NC_000913 1862301 C INS 293 1235 NC_000913 1869856 G repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=G SNP 294 1236 NC_000913 1870605 C SNP 295 1237 NC_000913 1870741 C SNP 296 1238 NC_000913 1882953 C SNP 297 1239 NC_000913 1885627 G SNP 298 1240 NC_000913 1888029 C SNP 299 1241 NC_000913 1893186 C SNP 300 1242 NC_000913 1896635 C SNP 301 1243 NC_000913 1899288 A SNP 302 1244 NC_000913 1902757 C SNP 303 1245 NC_000913 1904845 C SNP 304 1246 NC_000913 1905091 C SNP 305 1247 NC_000913 1930950 A SNP 306 1248 NC_000913 1933325 G SNP 307 1249 NC_000913 1934800 C SNP 308 1259 NC_000913 1973386 G SNP 309 1260 NC_000913 1973565 T SNP 310 1261 NC_000913 1973920 G DEL 311 1892,1909 NC_000913 1976527 776 INS 312 1262 NC_000913 1980940 C SNP 313 1263 NC_000913 1981668 G SNP 314 1264 NC_000913 1982766 T SNP 315 1265 NC_000913 1984089 G SNP 316 1266 NC_000913 1995537 C SNP 317 1267 NC_000913 1995724 G SNP 318 1269 NC_000913 2006874 G INS 319 1270 NC_000913 2008480 A SNP 320 1271 NC_000913 2025451 C INS 321 1272 NC_000913 2027751 C repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=C INS 322 1273 NC_000913 2037676 C repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=C SNP 323 1274 NC_000913 2043272 G SNP 324 1275 NC_000913 2049323 G SNP 325 1276 NC_000913 2069211 C SNP 326 1277 NC_000913 2072030 A SNP 327 1278 NC_000913 2086377 C SNP 328 1279 NC_000913 2086449 C SNP 329 1280 NC_000913 2094891 C SNP 330 1281 NC_000913 2116149 G SNP 331 1282 NC_000913 2132238 G SNP 332 1283 NC_000913 2147941 G SNP 333 1284 NC_000913 2152344 C SNP 334 1285 NC_000913 2152717 C SNP 335 1286 NC_000913 2154032 C SNP 336 1287 NC_000913 2156641 C SNP 337 1288 NC_000913 2161324 A SNP 338 1289 NC_000913 2191374 G DEL 339 1290 NC_000913 2202504 1 repeat_length=1 repeat_new_copies=6 repeat_ref_copies=7 repeat_seq=T SNP 340 1291 NC_000913 2205190 C SNP 341 1292 NC_000913 2210202 G SNP 342 1293 NC_000913 2216746 C SNP 343 1294 NC_000913 2219147 C SNP 344 1295 NC_000913 2223035 G SNP 345 1296 NC_000913 2223218 C SNP 346 1297 NC_000913 2234921 C SNP 347 1298 NC_000913 2238265 C SNP 348 1299 NC_000913 2239132 C SNP 349 1300 NC_000913 2252917 T SNP 350 1301 NC_000913 2258992 T INS 351 1302 NC_000913 2265000 G repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=G SNP 352 1303 NC_000913 2272980 C SNP 353 1304 NC_000913 2275005 C SNP 354 1305 NC_000913 2281824 A SNP 355 1306 NC_000913 2295407 T SNP 356 1307 NC_000913 2315444 C INS 357 1308 NC_000913 2324986 C repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=C SNP 358 1309 NC_000913 2327579 C SNP 359 1310 NC_000913 2343040 C SNP 360 1311 NC_000913 2359592 C DEL 361 1312 NC_000913 2381740 1 repeat_length=1 repeat_new_copies=4 repeat_ref_copies=5 repeat_seq=C SNP 362 1313 NC_000913 2414329 T SNP 363 1314 NC_000913 2417173 G SNP 364 1315 NC_000913 2429483 C SNP 365 1316 NC_000913 2438697 C SNP 366 1317 NC_000913 2441613 C SNP 367 1318 NC_000913 2453196 G SNP 368 1319 NC_000913 2486394 C SNP 369 1320 NC_000913 2486986 C SNP 370 1321 NC_000913 2490400 C SNP 371 1322 NC_000913 2497463 C SNP 372 1323 NC_000913 2501010 T SNP 373 1324 NC_000913 2506868 G SNP 374 1325 NC_000913 2509139 G SNP 375 1326 NC_000913 2524466 G SNP 376 1327 NC_000913 2530921 G SNP 377 1328 NC_000913 2551460 C SNP 378 1329 NC_000913 2571889 T SNP 379 1330 NC_000913 2578097 G SNP 380 1331 NC_000913 2594634 C SNP 381 1332 NC_000913 2595348 G SNP 382 1333 NC_000913 2609667 T SNP 383 1334 NC_000913 2612448 T SNP 384 1335 NC_000913 2616953 C SNP 385 1336 NC_000913 2621256 A SNP 386 1337 NC_000913 2637648 C INS 387 1338 NC_000913 2649291 C SNP 388 1339 NC_000913 2654241 G SNP 389 1340 NC_000913 2659764 T SNP 390 1341 NC_000913 2670111 A SNP 391 1342 NC_000913 2672460 A SNP 392 1343 NC_000913 2683080 C SNP 393 1344 NC_000913 2686480 C SNP 394 1345 NC_000913 2686792 G SNP 395 1346 NC_000913 2691024 T SNP 396 1347 NC_000913 2701551 C SNP 397 1348 NC_000913 2711990 T SNP 398 1349 NC_000913 2716362 C SNP 399 1350 NC_000913 2719936 G SNP 400 1351 NC_000913 2722348 A INS 401 1352 NC_000913 2729373 C SNP 402 1353 NC_000913 2744399 C DEL 403 1354 NC_000913 2747389 1 SNP 404 1355 NC_000913 2751091 C SNP 405 1356 NC_000913 2763367 A SNP 406 1358 NC_000913 2766382 G SNP 407 1359 NC_000913 2766423 A SUB 408 1360,1361 NC_000913 2766427 2 AC SNP 409 1362 NC_000913 2766473 G SNP 410 1363 NC_000913 2766475 G INS 411 1364 NC_000913 2781020 G SNP 412 1365 NC_000913 2781027 G DEL 413 1366 NC_000913 2785180 1 SNP 414 1367 NC_000913 2796560 C SNP 415 1368 NC_000913 2796565 C SNP 416 1369 NC_000913 2805526 G DEL 417 1370 NC_000913 2812859 1 SNP 418 1371 NC_000913 2819446 C DEL 419 1372 NC_000913 2820144 1 SNP 420 1373 NC_000913 2823915 G SNP 421 1374 NC_000913 2824797 C SNP 422 1375 NC_000913 2825102 C SNP 423 1376 NC_000913 2830091 C INS 424 1377 NC_000913 2838044 G DEL 425 1378 NC_000913 2838055 1 SNP 426 1379 NC_000913 2842033 T SNP 427 1380 NC_000913 2847927 G SNP 428 1381 NC_000913 2854119 T SNP 429 1382 NC_000913 2865091 C SNP 430 1383 NC_000913 2866286 C SNP 431 1384 NC_000913 2871779 G SNP 432 1385 NC_000913 2872811 C SNP 433 1386 NC_000913 2877536 C SNP 434 1387 NC_000913 2888375 G INS 435 1388 NC_000913 2896819 C SNP 436 1389 NC_000913 2917193 G SNP 437 1390 NC_000913 2923170 C SNP 438 1391 NC_000913 2923951 C SNP 439 1392 NC_000913 2926421 C SNP 440 1393 NC_000913 2929074 G SNP 441 1394 NC_000913 2932019 C SNP 442 1395 NC_000913 2956046 C SNP 443 1396 NC_000913 2961511 T SNP 444 1397 NC_000913 2963770 C SNP 445 1398 NC_000913 2967341 C SNP 446 1399 NC_000913 2968005 A SNP 447 1400 NC_000913 2971643 G SNP 448 1401 NC_000913 2977174 A SNP 449 1402 NC_000913 2996557 C INS 450 1403 NC_000913 3005399 C SNP 451 1404 NC_000913 3007730 C SNP 452 1405 NC_000913 3011468 A SNP 453 1406 NC_000913 3012261 G SNP 454 1407 NC_000913 3013656 C SNP 455 1408 NC_000913 3014968 A INS 456 1409 NC_000913 3025676 C SNP 457 1410 NC_000913 3034436 C INS 458 1411 NC_000913 3075220 T repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=T SNP 459 1412 NC_000913 3077340 C DEL 460 1413 NC_000913 3077514 1 INS 461 1414 NC_000913 3077640 G SNP 462 1415 NC_000913 3077905 G SNP 463 1416 NC_000913 3078245 G SNP 464 1417 NC_000913 3079965 A SNP 465 1418 NC_000913 3082631 T DEL 466 1419 NC_000913 3092722 1 repeat_length=1 repeat_new_copies=4 repeat_ref_copies=5 repeat_seq=C INS 467 1420 NC_000913 3093303 G INS 468 1421 NC_000913 3099661 A repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=A SNP 469 1422 NC_000913 3101362 A SNP 470 1423 NC_000913 3106997 T INS 471 1424 NC_000913 3107469 C SNP 472 1425 NC_000913 3108438 A INS 473 1426 NC_000913 3115116 C SNP 474 1427 NC_000913 3116492 T INS 475 1428 NC_000913 3123585 G SNP 476 1429 NC_000913 3130334 G SNP 477 1430 NC_000913 3132550 C SNP 478 1431 NC_000913 3142620 C SNP 479 1432 NC_000913 3150581 C SNP 480 1433 NC_000913 3151557 T INS 481 1434 NC_000913 3152247 C DEL 482 1910 NC_000913 3156257 3 repeat_length=3 repeat_new_copies=1 repeat_ref_copies=2 repeat_seq=CCA INS 483 1435 NC_000913 3158202 C SNP 484 1436 NC_000913 3158281 T SUB 485 1437,1438 NC_000913 3166935 2 CG SNP 486 1439 NC_000913 3167940 A SNP 487 1440 NC_000913 3185776 C SNP 488 1441 NC_000913 3185807 C SNP 489 1442 NC_000913 3186925 G SNP 490 1476 NC_000913 3194124 T SNP 491 1477 NC_000913 3195844 G SNP 492 1478 NC_000913 3206609 T SNP 493 1479 NC_000913 3206988 G SNP 494 1480 NC_000913 3208504 C SNP 495 1481 NC_000913 3215930 C SUB 496 1482,1483 NC_000913 3221097 2 GC SNP 497 1484 NC_000913 3221392 C SNP 498 1485 NC_000913 3222061 G SUB 499 1486,1487,1488,1489 NC_000913 3222944 4 AGCA DEL 500 1490 NC_000913 3224879 1 INS 501 1491 NC_000913 3224926 C SNP 502 1492 NC_000913 3225194 T DEL 503 1493 NC_000913 3236177 1 INS 504 1494 NC_000913 3236735 C DEL 505 1495 NC_000913 3236758 1 INS 506 1496 NC_000913 3237242 C INS 507 1497 NC_000913 3237247 C SNP 508 1498 NC_000913 3237790 C SNP 509 1499 NC_000913 3240123 C SNP 510 1500 NC_000913 3242993 G SNP 511 1501 NC_000913 3250165 T DEL 512 1502 NC_000913 3253742 1 SNP 513 1503 NC_000913 3255425 C DEL 514 1504 NC_000913 3255594 1 DEL 515 1505 NC_000913 3255616 1 INS 516 1506 NC_000913 3256893 C INS 517 1507 NC_000913 3257838 G SNP 518 1508 NC_000913 3269236 C SNP 519 1509 NC_000913 3278453 C SNP 520 1510 NC_000913 3279197 C SNP 521 1511 NC_000913 3291253 C INS 522 1513 NC_000913 3302454 C repeat_length=1 repeat_new_copies=8 repeat_ref_copies=7 repeat_seq=C SNP 523 1514 NC_000913 3304497 G SNP 524 1515 NC_000913 3310176 G SNP 525 1516 NC_000913 3310422 C SNP 526 1517 NC_000913 3312106 C SNP 527 1518 NC_000913 3319717 G SNP 528 1519 NC_000913 3345093 G SUB 529 1520,1521 NC_000913 3352254 2 GC SNP 530 1522 NC_000913 3358623 G SNP 531 1523 NC_000913 3362543 C SNP 532 1524 NC_000913 3362606 G SNP 533 1525 NC_000913 3371573 G DEL 534 1527 NC_000913 3389812 1 DEL 535 1529 NC_000913 3393106 1 SNP 536 1530 NC_000913 3405394 G SNP 537 1531 NC_000913 3406487 C SNP 538 1532 NC_000913 3410599 G INS 539 1533 NC_000913 3418840 G DEL 540 1534 NC_000913 3421120 1 DEL 541 1535 NC_000913 3429527 1 INS 542 1536 NC_000913 3430453 C SNP 543 1537 NC_000913 3432762 C SNP 544 1538 NC_000913 3446406 A SNP 545 1539 NC_000913 3446647 C SNP 546 1540 NC_000913 3446737 C SNP 547 1541 NC_000913 3455292 C SNP 548 1542 NC_000913 3458811 T SNP 549 1543 NC_000913 3461794 T SNP 550 1544 NC_000913 3464165 C SNP 551 1545 NC_000913 3469235 G SNP 552 1546 NC_000913 3471916 T SNP 553 1547 NC_000913 3477397 C SNP 554 1548 NC_000913 3483905 C SNP 555 1549 NC_000913 3494555 C SNP 556 1550 NC_000913 3500011 A DEL 557 1551 NC_000913 3500309 1 INS 558 1552 NC_000913 3506318 C repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=C SNP 559 1553 NC_000913 3509198 G DEL 560 1554 NC_000913 3509958 1 INS 561 1555 NC_000913 3510121 G SNP 562 1556 NC_000913 3519337 C SNP 563 1557 NC_000913 3522805 G INS 564 1558,1559 NC_000913 3537405 GC SNP 565 1560 NC_000913 3542788 G INS 566 1561 NC_000913 3544357 G INS 567 1562 NC_000913 3544360 G INS 568 1563 NC_000913 3544363 C SNP 569 1564 NC_000913 3548005 T INS 570 1565 NC_000913 3554088 C DEL 571 1566 NC_000913 3554113 1 INS 572 1567 NC_000913 3554118 C SUB 573 1568,1569 NC_000913 3558932 2 GC SNP 574 1570 NC_000913 3570076 C INS 575 1571 NC_000913 3573700 C INS 576 1572 NC_000913 3575446 G SNP 577 1573 NC_000913 3579035 C SNP 578 1574 NC_000913 3580138 G SNP 579 1575 NC_000913 3609245 C SNP 580 1576 NC_000913 3610653 G SNP 581 1577 NC_000913 3610686 G SNP 582 1582 NC_000913 3621612 C SNP 583 1583 NC_000913 3623600 C SNP 584 1584 NC_000913 3624949 T INS 585 1585 NC_000913 3627142 G SNP 586 1586 NC_000913 3629781 G SNP 587 1587 NC_000913 3654259 C SNP 588 1588 NC_000913 3661087 C SNP 589 1589 NC_000913 3670236 C INS 590 1590 NC_000913 3675076 G SNP 591 1591 NC_000913 3677270 C SNP 592 1592 NC_000913 3682619 G INS 593 1593 NC_000913 3686775 T SNP 594 1594 NC_000913 3692572 T SUB 595 1595,1596 NC_000913 3703602 2 GC SUB 596 1597,1598 NC_000913 3714436 2 GC SNP 597 1599 NC_000913 3718123 C INS 598 1600 NC_000913 3725747 C repeat_length=1 repeat_new_copies=9 repeat_ref_copies=8 repeat_seq=C SNP 599 1601 NC_000913 3732250 T SUB 600 1602,1603 NC_000913 3734264 2 GC SNP 601 1604 NC_000913 3735666 C SUB 602 1605,1606 NC_000913 3737956 2 CG SNP 603 1607 NC_000913 3738723 G SNP 604 1608 NC_000913 3743457 C DEL 605 1609 NC_000913 3743603 1 SNP 606 1610 NC_000913 3745459 C SNP 607 1611 NC_000913 3754310 A INS 608 1913 NC_000913 3754317 GCG DEL 609 1612 NC_000913 3757759 1 repeat_length=1 repeat_new_copies=5 repeat_ref_copies=6 repeat_seq=G SNP 610 1613 NC_000913 3758509 C SNP 611 1614 NC_000913 3758859 G SNP 612 1615 NC_000913 3764283 C SNP 613 1616 NC_000913 3765203 T SNP 614 1617 NC_000913 3765234 A SNP 615 1618 NC_000913 3766847 C SNP 616 1619 NC_000913 3768546 A SNP 617 1620 NC_000913 3771793 C SNP 618 1621 NC_000913 3778301 C SNP 619 1622 NC_000913 3782476 G SNP 620 1623 NC_000913 3783479 G SNP 621 1624 NC_000913 3788398 G SNP 622 1625 NC_000913 3807262 G SNP 623 1626 NC_000913 3816074 G SNP 624 1627 NC_000913 3823951 C SNP 625 1628 NC_000913 3825188 C SNP 626 1629 NC_000913 3836443 A SNP 627 1630 NC_000913 3840766 A SNP 628 1631 NC_000913 3842291 A SNP 629 1632 NC_000913 3845875 G SNP 630 1633 NC_000913 3853551 C SNP 631 1634 NC_000913 3854389 A SNP 632 1635 NC_000913 3854698 C SNP 633 1636 NC_000913 3857430 G SNP 634 1637 NC_000913 3859397 G SNP 635 1638 NC_000913 3866583 G SNP 636 1639 NC_000913 3866718 C SNP 637 1640 NC_000913 3867245 C DEL 638 1641 NC_000913 3870631 1 INS 639 1642 NC_000913 3870765 G DEL 640 1643 NC_000913 3870876 1 INS 641 1644 NC_000913 3872450 G DEL 642 1645 NC_000913 3873627 1 SNP 643 1646 NC_000913 3873986 C SNP 644 1647 NC_000913 3876595 C SNP 645 1648 NC_000913 3878432 G DEL 646 1649 NC_000913 3881483 1 SNP 647 1650 NC_000913 3882952 C SNP 648 1651 NC_000913 3886608 A SNP 649 1652 NC_000913 3887809 G SNP 650 1653 NC_000913 3893920 T SNP 651 1654 NC_000913 3893936 A INS 652 1655 NC_000913 3896324 G SNP 653 1656 NC_000913 3896435 A SNP 654 1657 NC_000913 3899440 C SNP 655 1658 NC_000913 3903393 A SNP 656 1659 NC_000913 3911412 G SNP 657 1660 NC_000913 3923014 G INS 658 1661 NC_000913 3927062 G SNP 659 1662 NC_000913 3929523 C DEL 660 1663 NC_000913 3930457 1 INS 661 1664 NC_000913 3930568 G INS 662 1665 NC_000913 3930677 G SNP 663 1666 NC_000913 3931033 G SNP 664 1667 NC_000913 3935895 G SNP 665 1668 NC_000913 3936289 G SNP 666 1669 NC_000913 3937900 A INS 667 1914 NC_000913 3938587 TGC DEL 668 1670 NC_000913 3941734 1 SNP 669 1671 NC_000913 3944244 A SUB 670 1672,1673 NC_000913 3944676 2 GC INS 671 1674 NC_000913 3945351 C SNP 672 1675 NC_000913 3947801 G SUB 673 1676,1677 NC_000913 3950557 2 GC INS 674 1678 NC_000913 3951166 C INS 675 1679 NC_000913 3951168 G INS 676 1680,1681 NC_000913 3957092 CC INS 677 1682 NC_000913 3957124 G SUB 678 1683,1684 NC_000913 3957548 1 GG INS 679 1685 NC_000913 3957551 T INS 680 1686 NC_000913 3957560 C SUB 681 1687,1688 NC_000913 3958877 2 CG SUB 682 1689,1690 NC_000913 3960578 2 CG SNP 683 1691 NC_000913 3961588 G SNP 684 1692 NC_000913 3962227 C SNP 685 1693 NC_000913 3963195 G SNP 686 1694 NC_000913 3964491 G SNP 687 1695 NC_000913 3967593 G INS 688 1915 NC_000913 3968317 CGT SUB 689 1696,1697 NC_000913 3969103 2 GC SUB 690 1698,1699 NC_000913 3971075 2 GC SUB 691 1700,1701 NC_000913 3972637 2 GC DEL 692 1702 NC_000913 3975313 1 SNP 693 1703 NC_000913 3978702 T INS 694 1704 NC_000913 3979535 G DEL 695 1705 NC_000913 3979546 1 INS 696 1706 NC_000913 3980297 C repeat_length=1 repeat_new_copies=9 repeat_ref_copies=8 repeat_seq=C SNP 697 1707 NC_000913 3980699 A SUB 698 1708,1709 NC_000913 3980918 2 CG SNP 699 1710 NC_000913 3986029 G SNP 700 1711 NC_000913 3986916 T SUB 701 1712,1713 NC_000913 3987586 2 GC SUB 702 1714,1715 NC_000913 3987822 2 CG SNP 703 1716 NC_000913 3994771 G INS 704 1717 NC_000913 3995357 G INS 705 1718 NC_000913 3998290 G SUB 706 1719,1720 NC_000913 4001421 2 GC SUB 707 1721,1722 NC_000913 4001486 2 GC INS 708 1723 NC_000913 4001717 C INS 709 1724 NC_000913 4004979 G INS 710 1725,1726 NC_000913 4004984 CG INS 711 1727 NC_000913 4005601 C INS 712 1728 NC_000913 4006483 C SUB 713 1729,1730 NC_000913 4007718 2 CG INS 714 1731,1732 NC_000913 4007907 GG INS 715 1733 NC_000913 4008375 A INS 716 1734 NC_000913 4008391 C SNP 717 1735 NC_000913 4008393 G INS 718 1736,1737,1738,1739 NC_000913 4008400 GAAA INS 719 1740 NC_000913 4008404 G INS 720 1741 NC_000913 4008411 C INS 721 1742 NC_000913 4008421 T INS 722 1743,1744 NC_000913 4008429 TG INS 723 1745 NC_000913 4008469 G INS 724 1746 NC_000913 4008473 G SUB 725 1747,1748 NC_000913 4008491 2 CG INS 726 1749 NC_000913 4008525 G SNP 727 1750 NC_000913 4013176 G INS 728 1751 NC_000913 4013177 C INS 729 1752 NC_000913 4013717 G INS 730 1753 NC_000913 4013772 C SNP 731 1754 NC_000913 4016743 T SNP 732 1755 NC_000913 4016796 C SNP 733 1756 NC_000913 4017086 C SNP 734 1757 NC_000913 4018552 G SNP 735 1758 NC_000913 4019857 T DEL 736 1759,1760 NC_000913 4019860 2 DEL 737 1761 NC_000913 4021684 1 SUB 738 1762,1763 NC_000913 4026252 2 GC SNP 739 1764 NC_000913 4027599 C SNP 740 1765 NC_000913 4028399 A INS 741 1766 NC_000913 4031984 C SNP 742 1767 NC_000913 4039349 C DEL 743 1768 NC_000913 4039960 1 SNP 744 1769 NC_000913 4041654 A INS 745 1770 NC_000913 4041671 T repeat_length=1 repeat_new_copies=7 repeat_ref_copies=6 repeat_seq=T DEL 746 1771 NC_000913 4051144 1 INS 747 1772 NC_000913 4051170 C INS 748 1773 NC_000913 4057759 C DEL 749 1774 NC_000913 4057859 1 repeat_length=1 repeat_new_copies=8 repeat_ref_copies=9 repeat_seq=T SNP 750 1775 NC_000913 4058326 G SNP 751 1776 NC_000913 4059768 G DEL 752 1777 NC_000913 4061961 1 SNP 753 1778 NC_000913 4066222 C SNP 754 1779 NC_000913 4071652 G DEL 755 1780 NC_000913 4085675 1 SNP 756 1781 NC_000913 4088793 C SNP 757 1783 NC_000913 4091351 T SUB 758 1899,1917 NC_000913 4091572 3461 GCATGCGGATCCTCTAGAGTCGACATATG SNP 759 1784 NC_000913 4097268 C INS 760 1785 NC_000913 4103519 T SNP 761 1786 NC_000913 4108732 C SNP 762 1787 NC_000913 4109226 G SNP 763 1788 NC_000913 4114335 C SNP 764 1789 NC_000913 4130398 G SNP 765 1790 NC_000913 4132580 A SNP 766 1791 NC_000913 4139091 G INS 767 1792 NC_000913 4139669 C SNP 768 1793 NC_000913 4145321 C SNP 769 1794 NC_000913 4155035 G SNP 770 1796 NC_000913 4158827 T SNP 771 1797 NC_000913 4161702 G SNP 772 1798 NC_000913 4162448 G SNP 773 1799 NC_000913 4170208 C SNP 774 1800 NC_000913 4171680 G INS 775 1801 NC_000913 4175949 G SNP 776 1802 NC_000913 4182169 G SNP 777 1803 NC_000913 4182994 A SUB 778 1804,1805 NC_000913 4194577 2 GC SNP 779 1806 NC_000913 4200901 G SNP 780 1808 NC_000913 4228096 G SNP 781 1809 NC_000913 4234288 G SNP 782 1810 NC_000913 4244613 G SNP 783 1811 NC_000913 4247622 G SNP 784 1812 NC_000913 4253010 A SNP 785 1813 NC_000913 4253868 G SNP 786 1814 NC_000913 4255791 G SNP 787 1815 NC_000913 4263561 C SNP 788 1816 NC_000913 4288835 C SNP 789 1817 NC_000913 4291199 A SNP 790 1818 NC_000913 4293107 G INS 791 1820,1821 NC_000913 4293960 GC SNP 792 1822 NC_000913 4296466 G SNP 793 1823 NC_000913 4310789 C INS 794 1824 NC_000913 4311496 C SNP 795 1825 NC_000913 4312334 G SNP 796 1826 NC_000913 4315095 T SNP 797 1827 NC_000913 4316203 A SNP 798 1828 NC_000913 4325494 G SNP 799 1829 NC_000913 4334019 G SNP 800 1830 NC_000913 4337885 G SNP 801 1831 NC_000913 4354595 G SNP 802 1832 NC_000913 4362298 C SNP 803 1833 NC_000913 4372763 C SNP 804 1834 NC_000913 4384043 G SNP 805 1835 NC_000913 4389966 G DEL 806 1836 NC_000913 4392651 1 repeat_length=1 repeat_new_copies=4 repeat_ref_copies=5 repeat_seq=G SNP 807 1837 NC_000913 4395798 G SNP 808 1838 NC_000913 4402992 G SNP 809 1839 NC_000913 4413673 T SNP 810 1840 NC_000913 4413828 G SNP 811 1841 NC_000913 4433048 G INS 812 1842 NC_000913 4435684 A SNP 813 1843 NC_000913 4444741 G INS 814 1844 NC_000913 4448541 C INS 815 1845 NC_000913 4448543 C INS 816 1846 NC_000913 4449738 G SNP 817 1847 NC_000913 4467145 G SNP 818 1848 NC_000913 4472408 G INS 819 1849 NC_000913 4474826 A SUB 820 1900,1918 NC_000913 4474849 20 GTATTTCCCGGCATCTTTATAGCGATAGCA SNP 821 1850 NC_000913 4476406 G DEL 822 1851 NC_000913 4477041 1 INS 823 1852 NC_000913 4477068 C DEL 824 1853 NC_000913 4477281 1 DEL 825 1854 NC_000913 4477321 1 DEL 826 1855 NC_000913 4478503 1 repeat_length=1 repeat_new_copies=6 repeat_ref_copies=7 repeat_seq=A DEL 827 1856 NC_000913 4478511 1 DEL 828 1857 NC_000913 4478527 1 SNP 829 1858 NC_000913 4485284 C SNP 830 1859 NC_000913 4490864 C SNP 831 1860 NC_000913 4502680 T SNP 832 1861 NC_000913 4508696 G SNP 833 1862 NC_000913 4532411 G SNP 834 1863 NC_000913 4542425 G DEL 835 1864 NC_000913 4542643 1 SNP 836 1865 NC_000913 4544170 C SNP 837 1866 NC_000913 4545947 A SNP 838 1867 NC_000913 4555245 C SNP 839 1868 NC_000913 4561348 G SNP 840 1869 NC_000913 4561662 G SNP 841 1871 NC_000913 4572272 A DEL 842 1872 NC_000913 4573190 1 SNP 843 1873 NC_000913 4583050 A SNP 844 1874 NC_000913 4589187 G SUB 845 1875,1876 NC_000913 4593254 2 GC INS 846 1877 NC_000913 4593336 G SNP 847 1878 NC_000913 4595908 C SNP 848 1879 NC_000913 4600078 T SNP 849 1880 NC_000913 4601332 G INS 850 1881 NC_000913 4603663 G repeat_length=1 repeat_new_copies=9 repeat_ref_copies=8 repeat_seq=G SNP 851 1882 NC_000913 4606898 C SUB 852 1883,1884 NC_000913 4608595 2 GC SNP 853 1885 NC_000913 4614238 T SNP 854 1886 NC_000913 4618604 C SNP 855 1887 NC_000913 4626495 G SNP 856 1888 NC_000913 4632259 C SNP 857 1889 NC_000913 4636923 C RA 858 . NC_000913 144 0 A G consensus_score=574.0 frequency=1 major_base=G major_cov=96/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=96/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=96/66 RA 859 . NC_000913 6610 0 G A bias_e_value=4639220 bias_p_value=1 consensus_score=901.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999965 major_base=A major_cov=137/101 major_frequency=9.958e-01 minor_base=T minor_cov=1/0 new_cov=137/101 polymorphism_frequency=9.958e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=138/101 RA 860 . NC_000913 11000 0 T C bias_e_value=1873870 bias_p_value=0.403919 consensus_score=953.0 fisher_strand_p_value=0.462963 frequency=1 ks_quality_p_value=0.290075 major_base=C major_cov=145/124 major_frequency=9.963e-01 minor_base=T minor_cov=0/1 new_cov=145/124 polymorphism_frequency=9.963e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=146/125 RA 861 . NC_000913 11729 0 T C consensus_score=676.5 frequency=1 major_base=C major_cov=84/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=84/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/110 RA 862 . NC_000913 28729 0 C T consensus_score=1033.2 frequency=1 major_base=T major_cov=129/135 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=129/135 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=129/135 RA 863 . NC_000913 30594 0 C T consensus_score=874.0 frequency=1 major_base=T major_cov=110/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/114 RA 864 . NC_000913 34913 0 C T consensus_score=952.0 frequency=1 major_base=T major_cov=109/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/133 RA 865 . NC_000913 38389 0 C T bias_e_value=697576 bias_p_value=0.150365 consensus_score=886.8 fisher_strand_p_value=0.0734503 frequency=1 ks_quality_p_value=0.468535 major_base=T major_cov=136/96 major_frequency=9.872e-01 minor_base=C minor_cov=0/3 new_cov=136/96 polymorphism_frequency=9.872e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=0/3 total_cov=136/99 RA 866 . NC_000913 49165 0 T C consensus_score=861.1 frequency=1 major_base=C major_cov=125/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/126 RA 867 . NC_000913 66528 0 T C consensus_score=717.8 frequency=1 major_base=C major_cov=100/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=100/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=100/107 RA 868 . NC_000913 70289 0 G T consensus_score=974.1 frequency=1 major_base=T major_cov=111/142 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/142 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/142 RA 869 . NC_000913 75074 0 T G bias_e_value=3.37539e-15 bias_p_value=7.27578e-22 consensus_reject=FREQUENCY_CUTOFF consensus_score=390.0 fisher_strand_p_value=1.35603e-23 frequency=2.185e-01 ks_quality_p_value=1 major_base=T major_cov=12/106 major_frequency=7.815e-01 minor_base=G minor_cov=33/0 new_cov=33/0 polymorphism_frequency=2.185e-01 polymorphism_score=31.2 prediction=polymorphism ref_cov=12/106 total_cov=45/106 RA 870 . NC_000913 78003 0 A C consensus_score=809.3 frequency=1 major_base=C major_cov=138/93 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=138/93 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=138/93 RA 871 . NC_000913 83095 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=763.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999841 major_base=G major_cov=105/119 major_frequency=9.956e-01 minor_base=T minor_cov=0/1 new_cov=105/119 polymorphism_frequency=9.956e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/120 RA 872 . NC_000913 87306 1 . G bias_e_value=3826240 bias_p_value=0.824759 consensus_score=752.6 fisher_strand_p_value=0.470046 frequency=1 ks_quality_p_value=0.999616 major_base=G major_cov=101/115 major_frequency=9.954e-01 minor_base=T minor_cov=1/0 new_cov=101/115 polymorphism_frequency=9.954e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=1/0 total_cov=103/115 RA 873 . NC_000913 105160 0 T C consensus_score=895.2 frequency=1 major_base=C major_cov=106/152 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=106/152 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=106/152 RA 874 . NC_000913 107212 0 A G bias_e_value=4375450 bias_p_value=0.943143 consensus_score=995.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.682325 major_base=G major_cov=143/147 major_frequency=9.966e-01 minor_base=A minor_cov=0/1 new_cov=143/147 polymorphism_frequency=9.966e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=143/148 RA 875 . NC_000913 108743 0 T C consensus_score=880.6 frequency=1 major_base=C major_cov=123/128 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=123/128 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/128 RA 876 . NC_000913 111615 0 T C bias_e_value=3680080 bias_p_value=0.793253 consensus_score=900.7 fisher_strand_p_value=0.490347 frequency=1 ks_quality_p_value=0.877765 major_base=C major_cov=132/126 major_frequency=9.961e-01 minor_base=T minor_cov=0/1 new_cov=132/126 polymorphism_frequency=9.961e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=0/1 total_cov=132/127 RA 877 . NC_000913 134969 0 A G bias_e_value=4590290 bias_p_value=0.989452 consensus_score=907.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.858314 major_base=G major_cov=130/130 major_frequency=9.962e-01 minor_base=A minor_cov=0/1 new_cov=130/130 polymorphism_frequency=9.962e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=130/131 RA 878 . NC_000913 138226 0 A G consensus_score=746.1 frequency=1 major_base=G major_cov=109/104 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/104 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/104 RA 879 . NC_000913 138888 0 T C consensus_score=886.8 frequency=1 major_base=C major_cov=134/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=134/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=134/120 RA 880 . NC_000913 147141 0 A G consensus_score=786.2 frequency=1 major_base=G major_cov=114/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/114 RA 881 . NC_000913 148627 0 C T consensus_score=896.0 frequency=1 major_base=T major_cov=136/95 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=136/95 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=136/95 RA 882 . NC_000913 148799 0 G A bias_e_value=1880240 bias_p_value=0.405292 consensus_score=922.9 fisher_strand_p_value=0.478992 frequency=1 ks_quality_p_value=0.281797 major_base=A major_cov=113/124 major_frequency=9.958e-01 minor_base=G minor_cov=1/0 new_cov=113/124 polymorphism_frequency=9.958e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=1/0 total_cov=114/124 RA 883 . NC_000913 156827 0 A G consensus_score=612.6 frequency=1 major_base=G major_cov=69/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=69/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=69/105 RA 884 . NC_000913 159762 0 A G consensus_score=890.7 frequency=1 major_base=G major_cov=113/141 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=113/141 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=113/141 RA 885 . NC_000913 171718 0 C T consensus_score=932.8 frequency=1 major_base=T major_cov=112/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/126 RA 886 . NC_000913 182747 0 A G consensus_score=884.3 frequency=1 major_base=G major_cov=103/151 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=103/151 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=103/151 RA 887 . NC_000913 196422 0 A G bias_e_value=3921860 bias_p_value=0.845371 consensus_score=854.9 fisher_strand_p_value=0.49827 frequency=1 ks_quality_p_value=1 major_base=G major_cov=121/125 major_frequency=9.919e-01 minor_base=T minor_cov=0/2 new_cov=121/125 polymorphism_frequency=9.919e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=1/0 total_cov=122/127 RA 888 . NC_000913 202345 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=758.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=107/109 major_frequency=9.954e-01 minor_base=A minor_cov=0/1 new_cov=107/109 polymorphism_frequency=9.954e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/110 RA 889 . NC_000913 214779 0 A G consensus_score=752.2 frequency=1 major_base=G major_cov=100/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=100/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=100/115 RA 890 . NC_000913 219130 0 A G consensus_score=990.1 frequency=1 major_base=G major_cov=143/137 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=143/137 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=143/137 RA 891 . NC_000913 231829 0 T C bias_e_value=3713050 bias_p_value=0.80036 consensus_score=707.4 fisher_strand_p_value=0.439024 frequency=1 ks_quality_p_value=0.999809 major_base=C major_cov=89/115 major_frequency=9.951e-01 minor_base=G minor_cov=1/0 new_cov=89/115 polymorphism_frequency=9.951e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/115 RA 892 . NC_000913 235988 0 T C consensus_score=892.5 frequency=1 major_base=C major_cov=143/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=143/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=143/109 RA 893 . NC_000913 241745 0 A G consensus_score=857.5 frequency=1 major_base=G major_cov=112/132 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/132 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/132 RA 894 . NC_000913 253831 0 T C bias_e_value=3017240 bias_p_value=0.650376 consensus_score=773.8 fisher_strand_p_value=0.466368 frequency=1 ks_quality_p_value=0.624243 major_base=C major_cov=103/119 major_frequency=9.955e-01 minor_base=T minor_cov=1/0 new_cov=103/119 polymorphism_frequency=9.955e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=104/119 RA 895 . NC_000913 254298 0 T C consensus_score=926.9 frequency=1 major_base=C major_cov=149/117 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=149/117 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=149/117 RA 896 . NC_000913 256955 0 T C consensus_score=838.6 frequency=1 major_base=C major_cov=137/104 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=137/104 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=137/104 RA 897 . NC_000913 260240 0 G A bias_e_value=3857170 bias_p_value=0.831427 consensus_score=956.4 fisher_strand_p_value=0.498506 frequency=1 ks_quality_p_value=0.96048 major_base=A major_cov=127/121 major_frequency=9.920e-01 minor_base=G minor_cov=2/0 new_cov=127/121 polymorphism_frequency=9.920e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=2/0 total_cov=130/121 RA 898 . NC_000913 264081 0 T C consensus_score=819.3 frequency=1 major_base=C major_cov=117/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=117/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/119 RA 899 . NC_000913 269425 0 A G consensus_score=765.1 frequency=1 major_base=G major_cov=100/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=100/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=100/115 RA 900 . NC_000913 272747 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=795.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=97/133 major_frequency=9.957e-01 minor_base=A minor_cov=0/1 new_cov=97/133 polymorphism_frequency=9.957e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=97/134 RA 901 . NC_000913 276473 0 T C consensus_score=864.9 frequency=1 major_base=C major_cov=115/134 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=115/134 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/134 RA 902 . NC_000913 283609 0 A G consensus_score=914.5 frequency=1 major_base=G major_cov=118/144 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=118/144 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=118/144 RA 903 . NC_000913 294479 0 T C consensus_score=737.0 frequency=1 major_base=C major_cov=133/75 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=133/75 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=133/75 RA 904 . NC_000913 296697 0 A G consensus_score=701.2 frequency=1 major_base=G major_cov=98/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=98/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/101 RA 905 . NC_000913 307659 0 T C consensus_score=617.2 frequency=1 major_base=C major_cov=106/76 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=106/76 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=106/76 RA 906 . NC_000913 316529 0 G A consensus_score=917.0 frequency=1 major_base=A major_cov=128/102 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=128/102 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/102 RA 907 . NC_000913 318936 0 C T bias_e_value=4639200 bias_p_value=0.999995 consensus_score=815.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99689 major_base=T major_cov=100/114 major_frequency=9.907e-01 minor_base=C minor_cov=1/1 new_cov=100/114 polymorphism_frequency=9.907e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/1 total_cov=101/115 RA 908 . NC_000913 320122 0 T C consensus_score=724.6 frequency=1 major_base=C major_cov=76/132 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=76/132 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=76/132 RA 909 . NC_000913 323407 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=810.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=109/126 major_frequency=9.958e-01 minor_base=T minor_cov=0/1 new_cov=109/126 polymorphism_frequency=9.958e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/127 RA 910 . NC_000913 334238 0 T C consensus_score=769.0 frequency=1 major_base=C major_cov=99/118 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=99/118 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=99/118 RA 911 . NC_000913 338761 0 G A consensus_score=1052.1 frequency=1 major_base=A major_cov=162/111 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=162/111 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=162/111 RA 912 . NC_000913 342649 0 T C consensus_score=635.5 frequency=1 major_base=C major_cov=81/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=81/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=81/107 RA 913 . NC_000913 358949 0 A G consensus_score=862.7 frequency=1 major_base=G major_cov=125/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/120 RA 914 . NC_000913 363169 0 A G bias_e_value=2774490 bias_p_value=0.59805 consensus_score=889.3 fisher_strand_p_value=0.251067 frequency=1 ks_quality_p_value=1 major_base=G major_cov=122/138 major_frequency=9.886e-01 minor_base=A minor_cov=0/3 new_cov=122/138 polymorphism_frequency=9.886e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=0/3 total_cov=122/141 RA 915 . NC_000913 368911 0 G A consensus_score=948.9 frequency=1 major_base=A major_cov=121/138 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=121/138 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=121/138 RA 916 . NC_000913 376616 0 A G consensus_score=887.1 frequency=1 major_base=G major_cov=124/130 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/130 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/130 RA 917 . NC_000913 379237 0 G . consensus_score=805.6 frequency=1 major_base=. major_cov=96/75 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=96/75 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=96/75 RA 918 . NC_000913 379238 0 G . bias_e_value=4639050 bias_p_value=0.999963 consensus_score=749.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.991425 major_base=. major_cov=93/72 major_frequency=9.649e-01 minor_base=G minor_cov=3/3 new_cov=93/72 polymorphism_frequency=9.649e-01 polymorphism_score=13.3 prediction=consensus ref_cov=3/3 total_cov=96/75 RA 919 . NC_000913 387560 0 A C bias_e_value=2.2212e-16 bias_p_value=4.78787e-23 consensus_reject=FREQUENCY_CUTOFF consensus_score=615.3 fisher_strand_p_value=8.48518e-25 frequency=2.289e-01 ks_quality_p_value=1 major_base=A major_cov=142/50 major_frequency=7.711e-01 minor_base=C minor_cov=1/56 new_cov=1/56 polymorphism_frequency=2.289e-01 polymorphism_score=20.6 prediction=polymorphism ref_cov=142/50 total_cov=143/107 RA 920 . NC_000913 394595 0 T C bias_e_value=3862630 bias_p_value=0.832603 consensus_score=750.9 fisher_strand_p_value=0.493151 frequency=1 ks_quality_p_value=0.974157 major_base=C major_cov=107/111 major_frequency=9.954e-01 minor_base=T minor_cov=1/0 new_cov=107/111 polymorphism_frequency=9.954e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=1/0 total_cov=108/111 RA 921 . NC_000913 400205 0 A G consensus_score=523.7 frequency=1 major_base=G major_cov=28/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/125 RA 922 . NC_000913 403250 0 A G consensus_score=861.3 frequency=1 major_base=G major_cov=123/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=123/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/126 RA 923 . NC_000913 406304 0 T C consensus_score=575.3 frequency=1 major_base=C major_cov=66/97 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=66/97 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/97 RA 924 . NC_000913 409858 0 A G consensus_score=789.0 frequency=1 major_base=G major_cov=80/147 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=80/147 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=80/147 RA 925 . NC_000913 418805 0 A G consensus_score=804.1 frequency=1 major_base=G major_cov=131/97 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=131/97 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/97 RA 926 . NC_000913 433850 0 A G consensus_score=744.9 frequency=1 major_base=G major_cov=117/93 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=117/93 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/93 RA 927 . NC_000913 434599 0 T C consensus_score=960.0 frequency=1 major_base=C major_cov=144/129 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=144/129 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=144/129 RA 928 . NC_000913 434687 0 A G bias_e_value=4639190 bias_p_value=0.999994 consensus_score=910.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996494 major_base=G major_cov=135/127 major_frequency=9.962e-01 minor_base=A minor_cov=1/0 new_cov=135/127 polymorphism_frequency=9.962e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=1/0 total_cov=136/128 RA 929 . NC_000913 440252 0 A G bias_e_value=1704890 bias_p_value=0.367496 consensus_score=852.3 fisher_strand_p_value=0.465587 frequency=1 ks_quality_p_value=0.250758 major_base=G major_cov=114/132 major_frequency=9.960e-01 minor_base=A minor_cov=1/0 new_cov=114/132 polymorphism_frequency=9.960e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=115/132 RA 930 . NC_000913 440417 0 C T bias_e_value=4209210 bias_p_value=0.907309 consensus_score=697.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.601597 major_base=T major_cov=89/95 major_frequency=9.946e-01 minor_base=C minor_cov=0/1 new_cov=89/95 polymorphism_frequency=9.946e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/1 total_cov=89/96 RA 931 . NC_000913 457312 0 T C consensus_score=928.4 frequency=1 major_base=C major_cov=138/127 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=138/127 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=138/127 RA 932 . NC_000913 459573 0 A G consensus_score=945.2 frequency=1 major_base=G major_cov=128/144 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=128/144 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/144 RA 933 . NC_000913 481922 0 T C consensus_score=850.4 frequency=1 major_base=C major_cov=114/130 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/130 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/130 RA 934 . NC_000913 484107 0 A G bias_e_value=2998770 bias_p_value=0.646395 consensus_score=1007.0 fisher_strand_p_value=0.475524 frequency=1 ks_quality_p_value=0.605468 major_base=G major_cov=135/150 major_frequency=9.965e-01 minor_base=A minor_cov=1/0 new_cov=135/150 polymorphism_frequency=9.965e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=1/0 total_cov=136/150 RA 935 . NC_000913 499456 0 A G bias_e_value=4246370 bias_p_value=0.915319 consensus_score=817.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.617783 major_base=G major_cov=125/117 major_frequency=9.959e-01 minor_base=A minor_cov=1/0 new_cov=125/117 polymorphism_frequency=9.959e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=126/117 RA 936 . NC_000913 500391 0 A . bias_e_value=2022940 bias_p_value=0.436053 consensus_score=1135.6 fisher_strand_p_value=0.487603 frequency=1 ks_quality_p_value=0.309234 major_base=. major_cov=124/117 major_frequency=9.959e-01 minor_base=G minor_cov=0/1 new_cov=124/117 polymorphism_frequency=9.959e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=0/0 total_cov=124/118 RA 937 . NC_000913 502653 0 C T bias_e_value=4639220 bias_p_value=1 consensus_score=835.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=112/107 major_frequency=9.955e-01 minor_base=G minor_cov=1/0 new_cov=112/107 polymorphism_frequency=9.955e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=113/107 RA 938 . NC_000913 509601 0 T . consensus_score=996.7 frequency=1 major_base=. major_cov=101/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=101/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=101/110 RA 939 . NC_000913 513153 0 A . consensus_score=1092.3 frequency=1 major_base=. major_cov=125/106 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/106 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/106 RA 940 . NC_000913 517074 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=846.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999966 major_base=G major_cov=109/132 major_frequency=9.959e-01 minor_base=C minor_cov=0/1 new_cov=109/132 polymorphism_frequency=9.959e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/133 RA 941 . NC_000913 518231 0 T C consensus_score=886.3 frequency=1 major_base=C major_cov=119/138 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=119/138 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=119/138 RA 942 . NC_000913 522693 0 T C consensus_score=701.3 frequency=1 major_base=C major_cov=121/83 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=121/83 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=121/83 RA 943 . NC_000913 527085 0 A G consensus_score=373.8 frequency=1 major_base=G major_cov=48/58 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/58 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/58 RA 944 . NC_000913 528763 0 T C consensus_score=722.3 frequency=1 major_base=C major_cov=110/99 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/99 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/99 RA 945 . NC_000913 531406 0 C T consensus_score=952.1 frequency=1 major_base=T major_cov=118/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=118/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=118/126 RA 946 . NC_000913 536980 0 A G bias_e_value=2613560 bias_p_value=0.563361 consensus_score=471.9 fisher_strand_p_value=0.244444 frequency=1 ks_quality_p_value=0.927987 major_base=G major_cov=102/32 major_frequency=9.926e-01 minor_base=A minor_cov=0/1 new_cov=102/32 polymorphism_frequency=9.926e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=102/33 RA 947 . NC_000913 542052 0 A G consensus_score=625.8 frequency=1 major_base=G major_cov=86/96 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=86/96 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=86/96 RA 948 . NC_000913 547694 0 A G bias_e_value=3764300 bias_p_value=0.811408 consensus_score=840.6 fisher_strand_p_value=0.452675 frequency=1 ks_quality_p_value=0.999864 major_base=G major_cov=109/133 major_frequency=9.959e-01 minor_base=A minor_cov=1/0 new_cov=109/133 polymorphism_frequency=9.959e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=111/133 RA 949 . NC_000913 547831 1 . G bias_e_value=3667750 bias_p_value=0.790597 consensus_score=759.3 fisher_strand_p_value=0.427273 frequency=1 ks_quality_p_value=1 major_base=G major_cov=126/93 major_frequency=9.955e-01 minor_base=T minor_cov=0/1 new_cov=126/93 polymorphism_frequency=9.955e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=126/95 RA 950 . NC_000913 552300 0 C T bias_e_value=3845710 bias_p_value=0.828957 consensus_score=777.6 fisher_strand_p_value=0.47549 frequency=1 ks_quality_p_value=0.999952 major_base=T major_cov=96/107 major_frequency=9.951e-01 minor_base=G minor_cov=1/0 new_cov=96/107 polymorphism_frequency=9.951e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=97/107 RA 951 . NC_000913 556636 0 A G bias_e_value=369169 bias_p_value=0.0795756 consensus_score=628.9 fisher_strand_p_value=0.0153773 frequency=1 ks_quality_p_value=1 major_base=G major_cov=126/66 major_frequency=9.796e-01 minor_base=T minor_cov=0/4 new_cov=126/66 polymorphism_frequency=9.796e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/70 RA 952 . NC_000913 562546 0 A G consensus_score=833.3 frequency=1 major_base=G major_cov=102/139 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=102/139 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/139 RA 953 . NC_000913 565477 0 A G bias_e_value=39620.9 bias_p_value=0.00854041 consensus_reject=FREQUENCY_CUTOFF consensus_score=789.5 fisher_strand_p_value=0.784685 frequency=2.085e-01 ks_quality_p_value=0.00139187 major_base=A major_cov=149/113 major_frequency=7.915e-01 minor_base=G minor_cov=41/28 new_cov=41/28 polymorphism_frequency=2.085e-01 polymorphism_score=165.2 prediction=polymorphism ref_cov=149/113 total_cov=190/141 RA 954 . NC_000913 565483 0 G T bias_e_value=48183.5 bias_p_value=0.0103861 consensus_reject=FREQUENCY_CUTOFF consensus_score=919.2 fisher_strand_p_value=0.790967 frequency=2.226e-01 ks_quality_p_value=0.00172895 major_base=G major_cov=151/111 major_frequency=7.774e-01 minor_base=T minor_cov=45/30 new_cov=45/30 polymorphism_frequency=2.226e-01 polymorphism_score=215.4 prediction=polymorphism ref_cov=151/111 total_cov=196/141 RA 955 . NC_000913 565490 0 T A bias_e_value=1668.58 bias_p_value=0.000359669 consensus_reject=FREQUENCY_CUTOFF consensus_score=716.5 fisher_strand_p_value=0.324915 frequency=2.629e-01 ks_quality_p_value=9.744e-05 major_base=T major_cov=146/112 major_frequency=7.371e-01 minor_base=A minor_cov=58/34 new_cov=58/34 polymorphism_frequency=2.629e-01 polymorphism_score=inf prediction=polymorphism ref_cov=146/112 total_cov=204/146 RA 956 . NC_000913 565495 0 G T bias_e_value=1070950 bias_p_value=0.230847 consensus_reject=FREQUENCY_CUTOFF consensus_score=794.0 fisher_strand_p_value=0.400924 frequency=2.877e-01 ks_quality_p_value=0.151469 major_base=G major_cov=145/105 major_frequency=7.123e-01 minor_base=T minor_cov=64/37 new_cov=64/37 polymorphism_frequency=2.877e-01 polymorphism_score=301.6 prediction=polymorphism ref_cov=145/105 total_cov=211/142 RA 957 . NC_000913 565498 0 A G bias_e_value=425167 bias_p_value=0.0916461 consensus_reject=FREQUENCY_CUTOFF consensus_score=614.2 fisher_strand_p_value=0.343598 frequency=2.946e-01 ks_quality_p_value=0.0533548 major_base=A major_cov=144/105 major_frequency=7.054e-01 minor_base=G minor_cov=66/38 new_cov=66/38 polymorphism_frequency=2.946e-01 polymorphism_score=273.0 prediction=polymorphism ref_cov=144/105 total_cov=210/143 RA 958 . NC_000913 565506 0 G C bias_e_value=3854100 bias_p_value=0.830765 consensus_reject=FREQUENCY_CUTOFF consensus_score=468.5 fisher_strand_p_value=0.50265 frequency=3.499e-01 ks_quality_p_value=0.950778 major_base=G major_cov=135/101 major_frequency=6.501e-01 minor_base=C minor_cov=78/49 new_cov=78/49 polymorphism_frequency=3.499e-01 polymorphism_score=inf prediction=polymorphism ref_cov=135/101 total_cov=213/150 RA 959 . NC_000913 565507 0 C G bias_e_value=3151880 bias_p_value=0.679399 consensus_reject=FREQUENCY_CUTOFF consensus_score=458.9 fisher_strand_p_value=0.50265 frequency=3.499e-01 ks_quality_p_value=0.627569 major_base=C major_cov=135/101 major_frequency=6.501e-01 minor_base=G minor_cov=78/49 new_cov=78/49 polymorphism_frequency=3.499e-01 polymorphism_score=inf prediction=polymorphism ref_cov=135/101 total_cov=213/150 RA 960 . NC_000913 565543 0 A C bias_e_value=248929 bias_p_value=0.0536575 consensus_reject=FREQUENCY_CUTOFF consensus_score=266.3 fisher_strand_p_value=0.11791 frequency=3.693e-01 ks_quality_p_value=0.0804264 major_base=A major_cov=120/102 major_frequency=6.307e-01 minor_base=C minor_cov=82/48 new_cov=82/48 polymorphism_frequency=3.693e-01 polymorphism_score=inf prediction=polymorphism ref_cov=120/102 total_cov=202/150 RA 961 . NC_000913 565546 0 C A bias_e_value=374829 bias_p_value=0.0807957 consensus_reject=FREQUENCY_CUTOFF consensus_score=530.5 fisher_strand_p_value=0.072353 frequency=3.561e-01 ks_quality_p_value=0.216581 major_base=C major_cov=122/104 major_frequency=6.439e-01 minor_base=A minor_cov=80/45 new_cov=80/45 polymorphism_frequency=3.561e-01 polymorphism_score=inf prediction=polymorphism ref_cov=122/104 total_cov=202/149 RA 962 . NC_000913 565549 0 T C bias_e_value=735808 bias_p_value=0.158606 consensus_reject=FREQUENCY_CUTOFF consensus_score=402.9 fisher_strand_p_value=0.162441 frequency=3.545e-01 ks_quality_p_value=0.227071 major_base=T major_cov=117/96 major_frequency=6.455e-01 minor_base=C minor_cov=74/43 new_cov=74/43 polymorphism_frequency=3.545e-01 polymorphism_score=inf prediction=polymorphism ref_cov=117/96 total_cov=191/139 RA 963 . NC_000913 565552 0 T G bias_e_value=980255 bias_p_value=0.211297 consensus_reject=FREQUENCY_CUTOFF consensus_score=284.5 fisher_strand_p_value=0.162441 frequency=3.545e-01 ks_quality_p_value=0.331761 major_base=T major_cov=117/96 major_frequency=6.455e-01 minor_base=G minor_cov=74/43 new_cov=74/43 polymorphism_frequency=3.545e-01 polymorphism_score=inf prediction=polymorphism ref_cov=117/96 total_cov=191/139 RA 964 . NC_000913 565555 0 T G bias_e_value=1467610 bias_p_value=0.316348 consensus_reject=FREQUENCY_CUTOFF consensus_score=329.2 fisher_strand_p_value=0.159519 frequency=3.415e-01 ks_quality_p_value=0.589505 major_base=T major_cov=117/99 major_frequency=6.585e-01 minor_base=G minor_cov=70/42 new_cov=70/42 polymorphism_frequency=3.415e-01 polymorphism_score=inf prediction=polymorphism ref_cov=117/99 total_cov=187/141 RA 965 . NC_000913 565558 0 C T bias_e_value=2174910 bias_p_value=0.468808 consensus_reject=FREQUENCY_CUTOFF consensus_score=327.7 fisher_strand_p_value=0.22876 frequency=3.344e-01 ks_quality_p_value=0.737169 major_base=C major_cov=114/95 major_frequency=6.656e-01 minor_base=T minor_cov=65/40 new_cov=65/40 polymorphism_frequency=3.344e-01 polymorphism_score=inf prediction=polymorphism ref_cov=114/95 total_cov=179/135 RA 966 . NC_000913 565567 0 A G bias_e_value=169207 bias_p_value=0.0364732 consensus_reject=FREQUENCY_CUTOFF consensus_score=507.8 fisher_strand_p_value=0.499911 frequency=2.669e-01 ks_quality_p_value=0.0119151 major_base=A major_cov=114/92 major_frequency=7.331e-01 minor_base=G minor_cov=45/30 new_cov=45/30 polymorphism_frequency=2.669e-01 polymorphism_score=183.1 prediction=polymorphism ref_cov=114/92 total_cov=160/122 RA 967 . NC_000913 565570 0 G A bias_e_value=1483640 bias_p_value=0.319803 consensus_reject=FREQUENCY_CUTOFF consensus_score=482.5 fisher_strand_p_value=0.280571 frequency=2.475e-01 ks_quality_p_value=0.340391 major_base=G major_cov=117/105 major_frequency=7.525e-01 minor_base=A minor_cov=44/29 new_cov=44/29 polymorphism_frequency=2.475e-01 polymorphism_score=211.9 prediction=polymorphism ref_cov=117/105 total_cov=161/134 RA 968 . NC_000913 565573 0 C G bias_e_value=3117010 bias_p_value=0.671882 consensus_reject=FREQUENCY_CUTOFF consensus_score=645.8 fisher_strand_p_value=0.576019 frequency=2.318e-01 ks_quality_p_value=0.536423 major_base=C major_cov=119/103 major_frequency=7.682e-01 minor_base=G minor_cov=39/28 new_cov=39/28 polymorphism_frequency=2.318e-01 polymorphism_score=204.2 prediction=polymorphism ref_cov=119/103 total_cov=158/131 RA 969 . NC_000913 577675 1 . C bias_e_value=2809820 bias_p_value=0.605666 consensus_score=583.0 fisher_strand_p_value=0.256622 frequency=1 ks_quality_p_value=1 major_base=C major_cov=86/106 major_frequency=9.846e-01 minor_base=. minor_cov=0/3 new_cov=86/106 polymorphism_frequency=9.846e-01 polymorphism_score=1.2 prediction=consensus ref_cov=0/3 total_cov=86/109 RA 970 . NC_000913 578027 0 T C consensus_score=628.5 frequency=1 major_base=C major_cov=59/118 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=59/118 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/118 RA 971 . NC_000913 579861 0 G T bias_e_value=4018310 bias_p_value=0.866161 consensus_reject=FREQUENCY_CUTOFF consensus_score=668.5 fisher_strand_p_value=0.628317 frequency=2.008e-01 ks_quality_p_value=0.84271 major_base=G major_cov=90/101 major_frequency=7.992e-01 minor_base=T minor_cov=25/23 new_cov=25/23 polymorphism_frequency=2.008e-01 polymorphism_score=134.7 prediction=polymorphism ref_cov=90/101 total_cov=115/124 RA 972 . NC_000913 579883 0 G A bias_e_value=3339320 bias_p_value=0.719802 consensus_reject=FREQUENCY_CUTOFF consensus_score=511.9 fisher_strand_p_value=0.748305 frequency=2.237e-01 ks_quality_p_value=0.470743 major_base=G major_cov=82/88 major_frequency=7.763e-01 minor_base=A minor_cov=25/24 new_cov=25/24 polymorphism_frequency=2.237e-01 polymorphism_score=136.8 prediction=polymorphism ref_cov=82/88 total_cov=107/112 RA 973 . NC_000913 579885 0 G A bias_e_value=4080040 bias_p_value=0.879467 consensus_reject=FREQUENCY_CUTOFF consensus_score=532.8 fisher_strand_p_value=0.746396 frequency=2.197e-01 ks_quality_p_value=0.738349 major_base=G major_cov=82/92 major_frequency=7.803e-01 minor_base=A minor_cov=25/24 new_cov=25/24 polymorphism_frequency=2.197e-01 polymorphism_score=130.2 prediction=polymorphism ref_cov=82/92 total_cov=107/116 RA 974 . NC_000913 579888 0 T C bias_e_value=181900 bias_p_value=0.0392092 consensus_reject=FREQUENCY_CUTOFF consensus_score=566.1 fisher_strand_p_value=1 frequency=2.258e-01 ks_quality_p_value=0.00649514 major_base=T major_cov=85/83 major_frequency=7.742e-01 minor_base=C minor_cov=25/24 new_cov=25/24 polymorphism_frequency=2.258e-01 polymorphism_score=119.4 prediction=polymorphism ref_cov=85/83 total_cov=110/107 RA 975 . NC_000913 580362 0 C A bias_e_value=185653 bias_p_value=0.0400182 consensus_reject=FREQUENCY_CUTOFF consensus_score=630.9 fisher_strand_p_value=0.883719 frequency=2.431e-01 ks_quality_p_value=0.00753198 major_base=C major_cov=106/87 major_frequency=7.569e-01 minor_base=A minor_cov=33/29 new_cov=33/29 polymorphism_frequency=2.431e-01 polymorphism_score=184.1 prediction=polymorphism ref_cov=106/87 total_cov=139/116 RA 976 . NC_000913 580364 0 G A bias_e_value=198770 bias_p_value=0.0428456 consensus_reject=FREQUENCY_CUTOFF consensus_score=561.1 fisher_strand_p_value=0.767424 frequency=2.562e-01 ks_quality_p_value=0.00941457 major_base=G major_cov=101/79 major_frequency=7.438e-01 minor_base=A minor_cov=33/29 new_cov=33/29 polymorphism_frequency=2.562e-01 polymorphism_score=180.5 prediction=polymorphism ref_cov=101/79 total_cov=134/109 RA 977 . NC_000913 580368 0 C T bias_e_value=1293800 bias_p_value=0.278883 consensus_reject=FREQUENCY_CUTOFF consensus_score=534.2 fisher_strand_p_value=0.882723 frequency=2.627e-01 ks_quality_p_value=0.0892088 major_base=C major_cov=95/79 major_frequency=7.373e-01 minor_base=T minor_cov=33/29 new_cov=33/29 polymorphism_frequency=2.627e-01 polymorphism_score=176.1 prediction=polymorphism ref_cov=95/79 total_cov=128/108 RA 978 . NC_000913 580377 0 A G bias_e_value=1720310 bias_p_value=0.37082 consensus_reject=FREQUENCY_CUTOFF consensus_score=454.4 fisher_strand_p_value=0.878971 frequency=3.039e-01 ks_quality_p_value=0.134592 major_base=A major_cov=78/64 major_frequency=6.961e-01 minor_base=G minor_cov=33/29 new_cov=33/29 polymorphism_frequency=3.039e-01 polymorphism_score=159.3 prediction=polymorphism ref_cov=78/64 total_cov=111/93 RA 979 . NC_000913 580398 0 T C bias_e_value=2832610 bias_p_value=0.610578 consensus_reject=FREQUENCY_CUTOFF consensus_score=282.2 fisher_strand_p_value=0.506905 frequency=3.893e-01 ks_quality_p_value=0.513413 major_base=T major_cov=45/46 major_frequency=6.107e-01 minor_base=C minor_cov=32/26 new_cov=32/26 polymorphism_frequency=3.893e-01 polymorphism_score=157.4 prediction=polymorphism ref_cov=45/46 total_cov=77/72 RA 980 . NC_000913 580401 0 T G bias_e_value=3362450 bias_p_value=0.724787 consensus_reject=FREQUENCY_CUTOFF consensus_score=225.6 fisher_strand_p_value=0.600925 frequency=4.394e-01 ks_quality_p_value=0.594196 major_base=T major_cov=37/37 major_frequency=5.606e-01 minor_base=G minor_cov=32/26 new_cov=32/26 polymorphism_frequency=4.394e-01 polymorphism_score=230.3 prediction=polymorphism ref_cov=37/37 total_cov=69/63 RA 981 . NC_000913 580419 0 C G bias_e_value=4639220 bias_p_value=1 consensus_reject=FREQUENCY_CUTOFF consensus_score=84.7 fisher_strand_p_value=1 frequency=6.104e-01 ks_quality_p_value=0.999705 major_base=G major_cov=24/23 major_frequency=6.104e-01 minor_base=C minor_cov=15/15 new_cov=24/23 polymorphism_frequency=6.104e-01 polymorphism_score=100.0 prediction=polymorphism ref_cov=15/15 total_cov=39/38 RA 982 . NC_000913 580422 0 A C bias_e_value=3303310 bias_p_value=0.71204 consensus_reject=FREQUENCY_CUTOFF consensus_score=67.3 fisher_strand_p_value=0.60112 frequency=6.000e-01 ks_quality_p_value=0.573753 major_base=C major_cov=21/15 major_frequency=6.000e-01 minor_base=A minor_cov=12/12 new_cov=21/15 polymorphism_frequency=6.000e-01 polymorphism_score=74.0 prediction=polymorphism ref_cov=12/12 total_cov=34/28 RA 983 . NC_000913 580425 0 T A bias_e_value=4506040 bias_p_value=0.971293 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.0 fisher_strand_p_value=0.77016 frequency=5.957e-01 ks_quality_p_value=1 major_base=A major_cov=13/15 major_frequency=5.957e-01 minor_base=T minor_cov=10/9 new_cov=13/15 polymorphism_frequency=5.957e-01 polymorphism_score=56.7 prediction=polymorphism ref_cov=10/9 total_cov=23/24 RA 984 . NC_000913 580429 0 A G bias_e_value=4591610 bias_p_value=0.989738 consensus_reject=FREQUENCY_CUTOFF consensus_score=20.6 fisher_strand_p_value=1 frequency=6.800e-01 ks_quality_p_value=0.860202 major_base=G major_cov=7/10 major_frequency=6.800e-01 minor_base=A minor_cov=3/5 new_cov=7/10 polymorphism_frequency=6.800e-01 polymorphism_score=19.3 prediction=polymorphism ref_cov=3/5 total_cov=10/15 RA 985 . NC_000913 580498 0 G A bias_e_value=599412 bias_p_value=0.129205 consensus_reject=FREQUENCY_CUTOFF consensus_score=21.9 fisher_strand_p_value=0.0722124 frequency=7.179e-01 ks_quality_p_value=0.391973 major_base=A major_cov=10/18 major_frequency=7.179e-01 minor_base=G minor_cov=8/3 new_cov=10/18 polymorphism_frequency=7.179e-01 polymorphism_score=25.0 prediction=polymorphism ref_cov=8/3 total_cov=18/21 RA 986 . NC_000913 580509 0 G C bias_e_value=3564190 bias_p_value=0.768273 consensus_reject=FREQUENCY_CUTOFF consensus_score=152.0 fisher_strand_p_value=1 frequency=4.659e-01 ks_quality_p_value=0.401922 major_base=G major_cov=17/30 major_frequency=5.341e-01 minor_base=C minor_cov=15/26 new_cov=15/26 polymorphism_frequency=4.659e-01 polymorphism_score=143.3 prediction=polymorphism ref_cov=17/30 total_cov=32/56 RA 987 . NC_000913 580512 0 A G bias_e_value=26081.4 bias_p_value=0.00562193 consensus_reject=FREQUENCY_CUTOFF consensus_score=147.1 fisher_strand_p_value=1 frequency=4.505e-01 ks_quality_p_value=0.000677588 major_base=A major_cov=19/31 major_frequency=5.495e-01 minor_base=G minor_cov=15/26 new_cov=15/26 polymorphism_frequency=4.505e-01 polymorphism_score=114.9 prediction=polymorphism ref_cov=19/31 total_cov=34/57 RA 988 . NC_000913 580513 0 C A bias_e_value=2638540 bias_p_value=0.568746 consensus_reject=FREQUENCY_CUTOFF consensus_score=188.4 fisher_strand_p_value=0.675385 frequency=4.227e-01 ks_quality_p_value=0.341272 major_base=C major_cov=24/32 major_frequency=5.773e-01 minor_base=A minor_cov=15/26 new_cov=15/26 polymorphism_frequency=4.227e-01 polymorphism_score=127.4 prediction=polymorphism ref_cov=24/32 total_cov=39/58 RA 989 . NC_000913 580514 0 G A bias_e_value=1933170 bias_p_value=0.416701 consensus_reject=FREQUENCY_CUTOFF consensus_score=175.0 fisher_strand_p_value=0.541006 frequency=4.059e-01 ks_quality_p_value=0.260138 major_base=G major_cov=26/34 major_frequency=5.941e-01 minor_base=A minor_cov=15/26 new_cov=15/26 polymorphism_frequency=4.059e-01 polymorphism_score=125.2 prediction=polymorphism ref_cov=26/34 total_cov=41/60 RA 990 . NC_000913 580518 0 T C bias_e_value=3151970 bias_p_value=0.679418 consensus_reject=FREQUENCY_CUTOFF consensus_score=240.4 fisher_strand_p_value=0.558156 frequency=3.596e-01 ks_quality_p_value=0.565189 major_base=T major_cov=31/42 major_frequency=6.404e-01 minor_base=C minor_cov=15/26 new_cov=15/26 polymorphism_frequency=3.596e-01 polymorphism_score=110.0 prediction=polymorphism ref_cov=31/42 total_cov=46/68 RA 991 . NC_000913 580524 0 C T bias_e_value=945372 bias_p_value=0.203778 consensus_reject=FREQUENCY_CUTOFF consensus_score=239.6 fisher_strand_p_value=0.5628 frequency=3.445e-01 ks_quality_p_value=0.0912196 major_base=C major_cov=33/45 major_frequency=6.555e-01 minor_base=T minor_cov=15/26 new_cov=15/26 polymorphism_frequency=3.445e-01 polymorphism_score=121.0 prediction=polymorphism ref_cov=33/45 total_cov=48/72 RA 992 . NC_000913 580545 0 C T bias_e_value=81426.7 bias_p_value=0.0175518 consensus_reject=FREQUENCY_CUTOFF consensus_score=299.7 fisher_strand_p_value=0.0777747 frequency=3.956e-01 ks_quality_p_value=0.0323011 major_base=C major_cov=66/70 major_frequency=6.044e-01 minor_base=T minor_cov=54/35 new_cov=54/35 polymorphism_frequency=3.956e-01 polymorphism_score=287.6 prediction=polymorphism ref_cov=66/70 total_cov=120/105 RA 993 . NC_000913 580558 0 C A bias_e_value=439898 bias_p_value=0.0948215 consensus_reject=FREQUENCY_CUTOFF consensus_score=573.0 fisher_strand_p_value=0.144792 frequency=3.560e-01 ks_quality_p_value=0.132127 major_base=C major_cov=81/80 major_frequency=6.440e-01 minor_base=A minor_cov=54/35 new_cov=54/35 polymorphism_frequency=3.560e-01 polymorphism_score=280.6 prediction=polymorphism ref_cov=81/80 total_cov=135/115 RA 994 . NC_000913 580560 0 G A bias_e_value=39112.1 bias_p_value=0.00843074 consensus_reject=FREQUENCY_CUTOFF consensus_score=427.0 fisher_strand_p_value=0.146966 frequency=3.412e-01 ks_quality_p_value=0.00732223 major_base=G major_cov=86/82 major_frequency=6.588e-01 minor_base=A minor_cov=53/34 new_cov=53/34 polymorphism_frequency=3.412e-01 polymorphism_score=273.8 prediction=polymorphism ref_cov=86/82 total_cov=139/116 RA 995 . NC_000913 580603 0 C G bias_e_value=834561 bias_p_value=0.179892 consensus_reject=FREQUENCY_CUTOFF consensus_score=732.4 fisher_strand_p_value=0.0435864 frequency=2.810e-01 ks_quality_p_value=0.998166 major_base=C major_cov=139/99 major_frequency=7.190e-01 minor_base=G minor_cov=66/27 new_cov=66/27 polymorphism_frequency=2.810e-01 polymorphism_score=308.5 prediction=polymorphism ref_cov=139/99 total_cov=205/126 RA 996 . NC_000913 580604 0 A G bias_e_value=666670 bias_p_value=0.143703 consensus_reject=FREQUENCY_CUTOFF consensus_score=679.2 fisher_strand_p_value=0.0324537 frequency=2.810e-01 ks_quality_p_value=1 major_base=A major_cov=137/101 major_frequency=7.190e-01 minor_base=G minor_cov=66/27 new_cov=66/27 polymorphism_frequency=2.810e-01 polymorphism_score=239.7 prediction=polymorphism ref_cov=137/101 total_cov=203/128 RA 997 . NC_000913 580699 0 G C bias_e_value=1177870 bias_p_value=0.253894 consensus_reject=FREQUENCY_CUTOFF consensus_score=557.4 fisher_strand_p_value=1 frequency=2.843e-01 ks_quality_p_value=0.0691544 major_base=G major_cov=119/105 major_frequency=7.157e-01 minor_base=C minor_cov=48/41 new_cov=48/41 polymorphism_frequency=2.843e-01 polymorphism_score=298.2 prediction=polymorphism ref_cov=119/105 total_cov=167/146 RA 998 . NC_000913 580705 0 A G bias_e_value=277065 bias_p_value=0.0597223 consensus_reject=FREQUENCY_CUTOFF consensus_score=518.9 fisher_strand_p_value=0.423851 frequency=3.239e-01 ks_quality_p_value=0.0254898 major_base=A major_cov=133/105 major_frequency=6.761e-01 minor_base=G minor_cov=58/56 new_cov=58/56 polymorphism_frequency=3.239e-01 polymorphism_score=299.8 prediction=polymorphism ref_cov=133/105 total_cov=191/161 RA 999 . NC_000913 580708 0 C G bias_e_value=389534 bias_p_value=0.0839654 consensus_reject=FREQUENCY_CUTOFF consensus_score=519.5 fisher_strand_p_value=0.36642 frequency=3.259e-01 ks_quality_p_value=0.0448594 major_base=C major_cov=137/105 major_frequency=6.741e-01 minor_base=G minor_cov=60/57 new_cov=60/57 polymorphism_frequency=3.259e-01 polymorphism_score=inf prediction=polymorphism ref_cov=137/105 total_cov=197/162 RA 1000 . NC_000913 580711 0 A C bias_e_value=240480 bias_p_value=0.0518363 consensus_reject=FREQUENCY_CUTOFF consensus_score=441.9 fisher_strand_p_value=0.214113 frequency=3.177e-01 ks_quality_p_value=0.0424722 major_base=A major_cov=142/105 major_frequency=6.823e-01 minor_base=C minor_cov=58/57 new_cov=58/57 polymorphism_frequency=3.177e-01 polymorphism_score=inf prediction=polymorphism ref_cov=142/105 total_cov=200/162 RA 1001 . NC_000913 580735 0 A G bias_e_value=130871 bias_p_value=0.0282096 consensus_reject=FREQUENCY_CUTOFF consensus_score=297.6 fisher_strand_p_value=0.00532469 frequency=4.262e-01 ks_quality_p_value=0.824073 major_base=A major_cov=142/95 major_frequency=5.738e-01 minor_base=G minor_cov=81/95 new_cov=81/95 polymorphism_frequency=4.262e-01 polymorphism_score=inf prediction=polymorphism ref_cov=142/95 total_cov=223/190 RA 1002 . NC_000913 580736 0 C T bias_e_value=153565 bias_p_value=0.0331015 consensus_reject=FREQUENCY_CUTOFF consensus_score=146.0 fisher_strand_p_value=0.00532469 frequency=4.262e-01 ks_quality_p_value=0.99641 major_base=C major_cov=142/95 major_frequency=5.738e-01 minor_base=T minor_cov=81/95 new_cov=81/95 polymorphism_frequency=4.262e-01 polymorphism_score=inf prediction=polymorphism ref_cov=142/95 total_cov=223/190 RA 1003 . NC_000913 580741 0 C G bias_e_value=47679.6 bias_p_value=0.0102775 consensus_reject=FREQUENCY_CUTOFF consensus_score=233.2 fisher_strand_p_value=0.00213432 frequency=4.341e-01 ks_quality_p_value=0.633027 major_base=C major_cov=143/93 major_frequency=5.659e-01 minor_base=G minor_cov=82/99 new_cov=82/99 polymorphism_frequency=4.341e-01 polymorphism_score=inf prediction=polymorphism ref_cov=143/93 total_cov=225/192 RA 1004 . NC_000913 580747 0 G A bias_e_value=49565.6 bias_p_value=0.010684 consensus_reject=FREQUENCY_CUTOFF consensus_score=136.6 fisher_strand_p_value=0.00141283 frequency=4.404e-01 ks_quality_p_value=1 major_base=G major_cov=145/99 major_frequency=5.596e-01 minor_base=A minor_cov=84/108 new_cov=84/108 polymorphism_frequency=4.404e-01 polymorphism_score=inf prediction=polymorphism ref_cov=145/99 total_cov=229/207 RA 1005 . NC_000913 580750 0 G C bias_e_value=1087.91 bias_p_value=0.000234502 consensus_reject=FREQUENCY_CUTOFF consensus_score=150.8 fisher_strand_p_value=0.00133658 frequency=4.507e-01 ks_quality_p_value=0.0148327 major_base=G major_cov=139/95 major_frequency=5.493e-01 minor_base=C minor_cov=84/108 new_cov=84/108 polymorphism_frequency=4.507e-01 polymorphism_score=inf prediction=polymorphism ref_cov=139/95 total_cov=223/203 RA 1006 . NC_000913 580753 0 C G bias_e_value=3351.57 bias_p_value=0.000722443 consensus_reject=FREQUENCY_CUTOFF consensus_score=186.4 fisher_strand_p_value=0.00341107 frequency=4.436e-01 ks_quality_p_value=0.0199936 major_base=C major_cov=129/93 major_frequency=5.564e-01 minor_base=G minor_cov=76/101 new_cov=76/101 polymorphism_frequency=4.436e-01 polymorphism_score=inf prediction=polymorphism ref_cov=129/93 total_cov=205/194 RA 1007 . NC_000913 580771 0 C T bias_e_value=987588 bias_p_value=0.212878 consensus_reject=FREQUENCY_CUTOFF consensus_score=47.6 fisher_strand_p_value=0.0544338 frequency=4.654e-01 ks_quality_p_value=1 major_base=C major_cov=123/109 major_frequency=5.346e-01 minor_base=T minor_cov=88/114 new_cov=88/114 polymorphism_frequency=4.654e-01 polymorphism_score=inf prediction=polymorphism ref_cov=123/109 total_cov=212/224 RA 1008 . NC_000913 580773 0 G A bias_e_value=679017 bias_p_value=0.146365 consensus_reject=FREQUENCY_CUTOFF consensus_score=25.9 fisher_strand_p_value=0.084933 frequency=4.658e-01 ks_quality_p_value=0.391283 major_base=G major_cov=123/111 major_frequency=5.342e-01 minor_base=A minor_cov=90/114 new_cov=90/114 polymorphism_frequency=4.658e-01 polymorphism_score=inf prediction=polymorphism ref_cov=123/111 total_cov=214/225 RA 1009 . NC_000913 580777 0 C T bias_e_value=349133 bias_p_value=0.0752569 consensus_reject=FREQUENCY_CUTOFF consensus_score=37.6 fisher_strand_p_value=0.127632 frequency=4.605e-01 ks_quality_p_value=0.112443 major_base=C major_cov=128/111 major_frequency=5.395e-01 minor_base=T minor_cov=94/110 new_cov=94/110 polymorphism_frequency=4.605e-01 polymorphism_score=inf prediction=polymorphism ref_cov=128/111 total_cov=222/221 RA 1010 . NC_000913 580783 0 C A bias_e_value=588308 bias_p_value=0.126812 consensus_reject=FREQUENCY_CUTOFF consensus_score=340.1 fisher_strand_p_value=0.0895395 frequency=4.602e-01 ks_quality_p_value=0.308647 major_base=C major_cov=128/116 major_frequency=5.398e-01 minor_base=A minor_cov=92/116 new_cov=92/116 polymorphism_frequency=4.602e-01 polymorphism_score=inf prediction=polymorphism ref_cov=128/116 total_cov=220/232 RA 1011 . NC_000913 580792 0 G C bias_e_value=14359.3 bias_p_value=0.0030952 consensus_reject=FREQUENCY_CUTOFF consensus_score=254.5 fisher_strand_p_value=0.0791085 frequency=4.236e-01 ks_quality_p_value=0.0043609 major_base=G major_cov=127/122 major_frequency=5.764e-01 minor_base=C minor_cov=77/106 new_cov=77/106 polymorphism_frequency=4.236e-01 polymorphism_score=inf prediction=polymorphism ref_cov=127/122 total_cov=205/228 RA 1012 . NC_000913 580795 0 T C bias_e_value=18174.6 bias_p_value=0.00391759 consensus_reject=FREQUENCY_CUTOFF consensus_score=265.8 fisher_strand_p_value=0.165541 frequency=4.386e-01 ks_quality_p_value=0.00271818 major_base=T major_cov=115/118 major_frequency=5.614e-01 minor_base=C minor_cov=77/105 new_cov=77/105 polymorphism_frequency=4.386e-01 polymorphism_score=inf prediction=polymorphism ref_cov=115/118 total_cov=192/223 RA 1013 . NC_000913 580798 0 G T bias_e_value=500937 bias_p_value=0.107979 consensus_reject=FREQUENCY_CUTOFF consensus_score=362.4 fisher_strand_p_value=0.160498 frequency=4.381e-01 ks_quality_p_value=0.140366 major_base=G major_cov=111/116 major_frequency=5.619e-01 minor_base=T minor_cov=74/103 new_cov=74/103 polymorphism_frequency=4.381e-01 polymorphism_score=inf prediction=polymorphism ref_cov=111/116 total_cov=185/219 RA 1014 . NC_000913 580801 0 G T bias_e_value=73819.3 bias_p_value=0.015912 consensus_reject=FREQUENCY_CUTOFF consensus_score=358.5 fisher_strand_p_value=0.228241 frequency=4.349e-01 ks_quality_p_value=0.00981789 major_base=G major_cov=111/119 major_frequency=5.651e-01 minor_base=T minor_cov=74/103 new_cov=74/103 polymorphism_frequency=4.349e-01 polymorphism_score=inf prediction=polymorphism ref_cov=111/119 total_cov=185/222 RA 1015 . NC_000913 580816 0 C T bias_e_value=972629 bias_p_value=0.209654 consensus_reject=FREQUENCY_CUTOFF consensus_score=316.7 fisher_strand_p_value=0.828905 frequency=3.583e-01 ks_quality_p_value=0.0643377 major_base=C major_cov=111/129 major_frequency=6.417e-01 minor_base=T minor_cov=60/74 new_cov=60/74 polymorphism_frequency=3.583e-01 polymorphism_score=inf prediction=polymorphism ref_cov=111/129 total_cov=171/203 RA 1016 . NC_000913 580819 0 T C bias_e_value=130183 bias_p_value=0.0280613 consensus_reject=FREQUENCY_CUTOFF consensus_score=472.2 fisher_strand_p_value=0.739338 frequency=3.407e-01 ks_quality_p_value=0.00589804 major_base=T major_cov=109/129 major_frequency=6.593e-01 minor_base=C minor_cov=54/69 new_cov=54/69 polymorphism_frequency=3.407e-01 polymorphism_score=inf prediction=polymorphism ref_cov=109/129 total_cov=164/198 RA 1017 . NC_000913 580825 0 C A bias_e_value=1335720 bias_p_value=0.287918 consensus_reject=FREQUENCY_CUTOFF consensus_score=696.2 fisher_strand_p_value=0.572311 frequency=3.250e-01 ks_quality_p_value=0.143861 major_base=C major_cov=110/133 major_frequency=6.750e-01 minor_base=A minor_cov=49/68 new_cov=49/68 polymorphism_frequency=3.250e-01 polymorphism_score=inf prediction=polymorphism ref_cov=110/133 total_cov=159/201 RA 1018 . NC_000913 580832 0 C T bias_e_value=4599670 bias_p_value=0.991475 consensus_reject=FREQUENCY_CUTOFF consensus_score=457.5 fisher_strand_p_value=1 frequency=2.976e-01 ks_quality_p_value=0.872296 major_base=C major_cov=109/127 major_frequency=7.024e-01 minor_base=T minor_cov=46/54 new_cov=46/54 polymorphism_frequency=2.976e-01 polymorphism_score=292.6 prediction=polymorphism ref_cov=109/127 total_cov=155/181 RA 1019 . NC_000913 580849 0 C G bias_e_value=3614510 bias_p_value=0.779119 consensus_reject=FREQUENCY_CUTOFF consensus_score=781.2 fisher_strand_p_value=0.415791 frequency=2.170e-01 ks_quality_p_value=0.995739 major_base=C major_cov=123/126 major_frequency=7.830e-01 minor_base=G minor_cov=30/39 new_cov=30/39 polymorphism_frequency=2.170e-01 polymorphism_score=214.5 prediction=polymorphism ref_cov=123/126 total_cov=153/165 RA 1020 . NC_000913 598799 0 T G bias_e_value=1.87191e-14 bias_p_value=4.03496e-21 consensus_reject=FREQUENCY_CUTOFF consensus_score=486.4 fisher_strand_p_value=7.77318e-23 frequency=2.067e-01 ks_quality_p_value=1 major_base=T major_cov=23/119 major_frequency=7.933e-01 minor_base=G minor_cov=37/0 new_cov=37/0 polymorphism_frequency=2.067e-01 polymorphism_score=17.5 prediction=polymorphism ref_cov=23/119 total_cov=60/119 RA 1021 . NC_000913 612751 0 T C consensus_score=858.6 frequency=1 major_base=C major_cov=121/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=121/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=121/122 RA 1022 . NC_000913 618600 0 A G consensus_score=859.0 frequency=1 major_base=G major_cov=109/135 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/135 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/135 RA 1023 . NC_000913 621553 0 A G consensus_score=838.6 frequency=1 major_base=G major_cov=134/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=134/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=134/105 RA 1024 . NC_000913 624133 0 T C bias_e_value=4639140 bias_p_value=0.999983 consensus_score=968.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.994215 major_base=C major_cov=140/138 major_frequency=9.964e-01 minor_base=T minor_cov=1/0 new_cov=140/138 polymorphism_frequency=9.964e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=1/0 total_cov=141/138 RA 1025 . NC_000913 638137 0 A G consensus_score=762.7 frequency=1 major_base=G major_cov=102/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=102/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/113 RA 1026 . NC_000913 650672 0 C T bias_e_value=4441560 bias_p_value=0.957395 consensus_score=844.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.722668 major_base=T major_cov=107/115 major_frequency=9.867e-01 minor_base=C minor_cov=1/2 new_cov=107/115 polymorphism_frequency=9.867e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=1/2 total_cov=108/117 RA 1027 . NC_000913 659755 0 G A bias_e_value=4639220 bias_p_value=1 consensus_score=910.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999964 major_base=A major_cov=124/110 major_frequency=9.957e-01 minor_base=G minor_cov=1/0 new_cov=124/110 polymorphism_frequency=9.957e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=125/110 RA 1028 . NC_000913 670751 0 G A bias_e_value=4639220 bias_p_value=1 consensus_score=797.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=108/97 major_frequency=9.951e-01 minor_base=C minor_cov=1/0 new_cov=108/97 polymorphism_frequency=9.951e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/97 RA 1029 . NC_000913 683225 0 A G consensus_score=808.4 frequency=1 major_base=G major_cov=108/121 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=108/121 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=108/121 RA 1030 . NC_000913 684216 0 A G bias_e_value=4448170 bias_p_value=0.958819 consensus_score=843.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.727094 major_base=G major_cov=114/131 major_frequency=9.959e-01 minor_base=A minor_cov=0/1 new_cov=114/131 polymorphism_frequency=9.959e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=114/132 RA 1031 . NC_000913 684796 0 A G consensus_score=762.7 frequency=1 major_base=G major_cov=91/127 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/127 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/127 RA 1032 . NC_000913 697801 0 A G bias_e_value=1008240 bias_p_value=0.21733 consensus_score=796.7 fisher_strand_p_value=0.498309 frequency=1 ks_quality_p_value=0.112321 major_base=G major_cov=119/114 major_frequency=9.915e-01 minor_base=A minor_cov=2/0 new_cov=119/114 polymorphism_frequency=9.915e-01 polymorphism_score=-2.5 prediction=consensus ref_cov=2/0 total_cov=121/114 RA 1033 . NC_000913 704130 0 A G consensus_score=611.7 frequency=1 major_base=G major_cov=79/100 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=79/100 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=79/100 RA 1034 . NC_000913 704236 0 T C consensus_score=715.7 frequency=1 major_base=C major_cov=130/73 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=130/73 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=130/73 RA 1035 . NC_000913 704311 0 A G consensus_score=715.2 frequency=1 major_base=G major_cov=118/85 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=118/85 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=118/85 RA 1036 . NC_000913 708421 0 G A consensus_score=865.0 frequency=1 major_base=A major_cov=115/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=115/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/105 RA 1037 . NC_000913 709321 0 A G consensus_score=891.3 frequency=1 major_base=G major_cov=126/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=126/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/126 RA 1038 . NC_000913 713902 0 A G consensus_score=740.4 frequency=1 major_base=G major_cov=93/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=93/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=93/119 RA 1039 . NC_000913 715139 0 T C consensus_score=657.7 frequency=1 major_base=C major_cov=78/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=78/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=78/110 RA 1040 . NC_000913 716521 0 A G bias_e_value=4286830 bias_p_value=0.92404 consensus_score=739.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.636474 major_base=G major_cov=103/109 major_frequency=9.953e-01 minor_base=A minor_cov=0/1 new_cov=103/109 polymorphism_frequency=9.953e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=103/110 RA 1041 . NC_000913 719820 0 A G consensus_score=770.5 frequency=1 major_base=G major_cov=127/90 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/90 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/90 RA 1042 . NC_000913 720776 0 T C consensus_score=681.9 frequency=1 major_base=C major_cov=89/106 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=89/106 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=89/106 RA 1043 . NC_000913 729698 0 A G bias_e_value=2737750 bias_p_value=0.59013 consensus_score=155.6 fisher_strand_p_value=0.248252 frequency=1 ks_quality_p_value=0.988444 major_base=G major_cov=40/26 major_frequency=9.041e-01 minor_base=A minor_cov=6/1 new_cov=40/26 polymorphism_frequency=9.041e-01 polymorphism_score=11.7 prediction=consensus ref_cov=6/1 total_cov=46/27 RA 1044 . NC_000913 745155 0 A G consensus_score=902.7 frequency=1 major_base=G major_cov=161/99 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=161/99 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=161/99 RA 1045 . NC_000913 746390 0 A G consensus_score=686.2 frequency=1 major_base=G major_cov=89/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=89/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=89/110 RA 1046 . NC_000913 751748 0 C T bias_e_value=3291780 bias_p_value=0.709555 consensus_score=880.5 fisher_strand_p_value=0.444444 frequency=1 ks_quality_p_value=0.770776 major_base=T major_cov=99/125 major_frequency=9.956e-01 minor_base=C minor_cov=1/0 new_cov=99/125 polymorphism_frequency=9.956e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=1/0 total_cov=100/125 RA 1047 . NC_000913 753753 0 T C consensus_score=759.7 frequency=1 major_base=C major_cov=98/118 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=98/118 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/118 RA 1048 . NC_000913 756426 0 A G consensus_score=894.1 frequency=1 major_base=G major_cov=105/153 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=105/153 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/153 RA 1049 . NC_000913 763352 0 A G bias_e_value=1664810 bias_p_value=0.358856 consensus_score=719.7 fisher_strand_p_value=0.410628 frequency=1 ks_quality_p_value=0.274601 major_base=G major_cov=84/122 major_frequency=9.952e-01 minor_base=A minor_cov=1/0 new_cov=84/122 polymorphism_frequency=9.952e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=85/122 RA 1050 . NC_000913 765778 0 C T consensus_score=835.4 frequency=1 major_base=T major_cov=94/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=94/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=94/122 RA 1051 . NC_000913 784126 0 A G consensus_score=777.4 frequency=1 major_base=G major_cov=120/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=120/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/105 RA 1052 . NC_000913 791797 0 T C bias_e_value=2556140 bias_p_value=0.550984 consensus_score=733.5 fisher_strand_p_value=0.49763 frequency=1 ks_quality_p_value=0.439282 major_base=C major_cov=104/106 major_frequency=9.953e-01 minor_base=T minor_cov=1/0 new_cov=104/106 polymorphism_frequency=9.953e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=105/106 RA 1053 . NC_000913 816466 0 T C consensus_score=909.3 frequency=1 major_base=C major_cov=131/136 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=131/136 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/136 RA 1054 . NC_000913 817223 0 T C consensus_score=812.4 frequency=1 major_base=C major_cov=114/117 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/117 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/117 RA 1055 . NC_000913 831133 0 T C consensus_score=858.8 frequency=1 major_base=C major_cov=114/136 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/136 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/136 RA 1056 . NC_000913 844809 0 A G bias_e_value=3557120 bias_p_value=0.76675 consensus_score=707.4 fisher_strand_p_value=0.460784 frequency=1 ks_quality_p_value=0.868638 major_base=G major_cov=110/93 major_frequency=9.951e-01 minor_base=A minor_cov=0/1 new_cov=110/93 polymorphism_frequency=9.951e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=110/94 RA 1057 . NC_000913 847139 0 G T consensus_score=810.9 frequency=1 major_base=T major_cov=110/97 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/97 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/97 RA 1058 . NC_000913 850482 0 A T consensus_score=734.4 frequency=1 major_base=T major_cov=111/77 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/77 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/77 RA 1059 . NC_000913 866086 0 G A consensus_score=813.9 frequency=1 major_base=A major_cov=109/106 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/106 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/106 RA 1060 . NC_000913 866582 0 A G consensus_score=665.1 frequency=1 major_base=G major_cov=92/100 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/100 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/100 RA 1061 . NC_000913 867637 0 G C bias_e_value=1194570 bias_p_value=0.257493 consensus_score=634.8 fisher_strand_p_value=0.141896 frequency=1 ks_quality_p_value=0.496887 major_base=C major_cov=104/83 major_frequency=9.639e-01 minor_base=G minor_cov=6/1 new_cov=104/83 polymorphism_frequency=9.639e-01 polymorphism_score=11.2 prediction=consensus ref_cov=6/1 total_cov=110/84 RA 1062 . NC_000913 878307 0 A G consensus_score=620.7 frequency=1 major_base=G major_cov=76/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=76/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=76/105 RA 1063 . NC_000913 881233 0 T C consensus_score=696.3 frequency=1 major_base=C major_cov=91/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/107 RA 1064 . NC_000913 888260 0 A G consensus_score=779.0 frequency=1 major_base=G major_cov=115/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=115/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/107 RA 1065 . NC_000913 899581 0 A T bias_e_value=4344050 bias_p_value=0.936375 consensus_score=796.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.665186 major_base=T major_cov=83/129 major_frequency=9.907e-01 minor_base=A minor_cov=1/1 new_cov=83/129 polymorphism_frequency=9.907e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/1 total_cov=85/130 RA 1066 . NC_000913 905792 0 A G consensus_score=871.1 frequency=1 major_base=G major_cov=126/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=126/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/120 RA 1067 . NC_000913 914422 0 A G consensus_score=514.2 frequency=1 major_base=G major_cov=89/87 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=89/87 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=89/87 RA 1068 . NC_000913 914564 0 T C consensus_score=765.6 frequency=1 major_base=C major_cov=118/99 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=118/99 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=118/99 RA 1069 . NC_000913 928190 0 G A bias_e_value=4639140 bias_p_value=0.999982 consensus_score=775.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99393 major_base=A major_cov=116/101 major_frequency=9.954e-01 minor_base=C minor_cov=1/0 new_cov=116/101 polymorphism_frequency=9.954e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/101 RA 1070 . NC_000913 934731 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=473.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=101/41 major_frequency=9.930e-01 minor_base=A minor_cov=1/0 new_cov=101/41 polymorphism_frequency=9.930e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=102/41 RA 1071 . NC_000913 946689 0 A G bias_e_value=3701950 bias_p_value=0.797968 consensus_score=584.5 fisher_strand_p_value=0.436047 frequency=1 ks_quality_p_value=1 major_base=G major_cov=97/74 major_frequency=9.942e-01 minor_base=A minor_cov=0/1 new_cov=97/74 polymorphism_frequency=9.942e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=97/75 RA 1072 . NC_000913 961423 0 A G bias_e_value=3270090 bias_p_value=0.704879 consensus_score=724.3 fisher_strand_p_value=0.421053 frequency=1 ks_quality_p_value=0.803292 major_base=G major_cov=121/87 major_frequency=9.952e-01 minor_base=A minor_cov=0/1 new_cov=121/87 polymorphism_frequency=9.952e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=121/88 RA 1073 . NC_000913 962413 0 A G consensus_score=759.4 frequency=1 major_base=G major_cov=87/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=87/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=87/133 RA 1074 . NC_000913 969158 0 C T consensus_score=834.8 frequency=1 major_base=T major_cov=110/108 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/108 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/108 RA 1075 . NC_000913 974875 0 C T bias_e_value=4639210 bias_p_value=0.999998 consensus_score=1073.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997852 major_base=T major_cov=148/126 major_frequency=9.964e-01 minor_base=G minor_cov=1/0 new_cov=148/126 polymorphism_frequency=9.964e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/0 total_cov=149/126 RA 1076 . NC_000913 976763 0 G A consensus_score=868.5 frequency=1 major_base=A major_cov=111/117 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/117 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/117 RA 1077 . NC_000913 981066 0 A T consensus_score=834.4 frequency=1 major_base=T major_cov=109/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/112 RA 1078 . NC_000913 981566 0 C T consensus_score=842.0 frequency=1 major_base=T major_cov=116/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/98 RA 1079 . NC_000913 1003376 1 . G bias_e_value=2752570 bias_p_value=0.593326 consensus_score=456.0 fisher_strand_p_value=0.264392 frequency=1 ks_quality_p_value=0.936735 major_base=G major_cov=114/18 major_frequency=9.851e-01 minor_base=. minor_cov=1/1 new_cov=114/18 polymorphism_frequency=9.851e-01 polymorphism_score=-0.5 prediction=consensus ref_cov=1/1 total_cov=115/19 RA 1080 . NC_000913 1010324 0 A G consensus_score=864.5 frequency=1 major_base=G major_cov=134/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=134/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=134/114 RA 1081 . NC_000913 1015850 0 T C consensus_score=891.5 frequency=1 major_base=C major_cov=130/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=130/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=130/122 RA 1082 . NC_000913 1016180 0 A G consensus_score=860.6 frequency=1 major_base=G major_cov=124/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/122 RA 1083 . NC_000913 1019358 0 T C consensus_score=511.4 frequency=1 major_base=C major_cov=70/75 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=70/75 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=70/75 RA 1084 . NC_000913 1024792 0 G A consensus_score=859.1 frequency=1 major_base=A major_cov=121/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=121/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=121/98 RA 1085 . NC_000913 1032328 0 A G bias_e_value=3757440 bias_p_value=0.809929 consensus_score=660.8 fisher_strand_p_value=0.450777 frequency=1 ks_quality_p_value=0.999946 major_base=G major_cov=106/86 major_frequency=9.948e-01 minor_base=A minor_cov=0/1 new_cov=106/86 polymorphism_frequency=9.948e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=106/87 RA 1086 . NC_000913 1038386 0 T C consensus_score=814.1 frequency=1 major_base=C major_cov=119/117 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=119/117 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=119/117 RA 1087 . NC_000913 1049079 0 T C bias_e_value=4628420 bias_p_value=0.997673 consensus_score=359.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.932555 major_base=C major_cov=67/77 major_frequency=9.931e-01 minor_base=T minor_cov=0/1 new_cov=67/77 polymorphism_frequency=9.931e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=67/78 RA 1088 . NC_000913 1051162 0 A . bias_e_value=4639220 bias_p_value=1 consensus_score=1028.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=99/119 major_frequency=9.954e-01 minor_base=G minor_cov=0/1 new_cov=99/119 polymorphism_frequency=9.954e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=0/0 total_cov=99/120 RA 1089 . NC_000913 1053820 0 T C consensus_score=826.0 frequency=1 major_base=C major_cov=111/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/125 RA 1090 . NC_000913 1056041 0 A G consensus_score=774.7 frequency=1 major_base=G major_cov=112/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/112 RA 1091 . NC_000913 1061451 0 A G bias_e_value=3902200 bias_p_value=0.841132 consensus_score=890.2 fisher_strand_p_value=0.492366 frequency=1 ks_quality_p_value=0.999737 major_base=G major_cov=133/128 major_frequency=9.962e-01 minor_base=T minor_cov=0/1 new_cov=133/128 polymorphism_frequency=9.962e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=133/129 RA 1092 . NC_000913 1062796 0 A G consensus_score=819.5 frequency=1 major_base=G major_cov=110/124 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/124 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/124 RA 1093 . NC_000913 1064328 0 A G consensus_score=636.0 frequency=1 major_base=G major_cov=107/72 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=107/72 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/72 RA 1094 . NC_000913 1065252 0 T C consensus_score=736.6 frequency=1 major_base=C major_cov=109/100 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/100 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/100 RA 1095 . NC_000913 1066017 0 T C consensus_score=718.1 frequency=1 major_base=C major_cov=91/111 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/111 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/111 RA 1096 . NC_000913 1074187 0 T C consensus_score=730.3 frequency=1 major_base=C major_cov=119/90 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=119/90 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=119/90 RA 1097 . NC_000913 1086330 0 T C consensus_score=763.8 frequency=1 major_base=C major_cov=110/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/110 RA 1098 . NC_000913 1090676 0 A G consensus_score=706.6 frequency=1 major_base=G major_cov=125/77 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/77 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/77 RA 1099 . NC_000913 1098156 0 A G bias_e_value=1790920 bias_p_value=0.38604 consensus_score=794.4 fisher_strand_p_value=0.431718 frequency=1 ks_quality_p_value=0.290778 major_base=G major_cov=129/97 major_frequency=9.956e-01 minor_base=A minor_cov=0/1 new_cov=129/97 polymorphism_frequency=9.956e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=129/98 RA 1100 . NC_000913 1119304 0 T C bias_e_value=2161390 bias_p_value=0.465896 consensus_score=799.4 fisher_strand_p_value=0.469565 frequency=1 ks_quality_p_value=0.355655 major_base=C major_cov=107/122 major_frequency=9.957e-01 minor_base=T minor_cov=1/0 new_cov=107/122 polymorphism_frequency=9.957e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=108/122 RA 1101 . NC_000913 1130725 0 A G consensus_score=743.7 frequency=1 major_base=G major_cov=92/121 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/121 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/121 RA 1102 . NC_000913 1141015 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=851.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999967 major_base=C major_cov=146/101 major_frequency=9.960e-01 minor_base=T minor_cov=1/0 new_cov=146/101 polymorphism_frequency=9.960e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=148/101 RA 1103 . NC_000913 1142917 0 T C consensus_score=681.6 frequency=1 major_base=C major_cov=89/106 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=89/106 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=89/106 RA 1104 . NC_000913 1143101 0 T C consensus_score=632.2 frequency=1 major_base=C major_cov=111/72 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/72 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/72 RA 1105 . NC_000913 1147697 0 A G consensus_score=784.0 frequency=1 major_base=G major_cov=110/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/115 RA 1106 . NC_000913 1154920 0 C T consensus_score=743.7 frequency=1 major_base=T major_cov=99/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=99/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=99/94 RA 1107 . NC_000913 1155780 0 A G consensus_score=786.8 frequency=1 major_base=G major_cov=120/104 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=120/104 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/104 RA 1108 . NC_000913 1156390 0 A G bias_e_value=3670070 bias_p_value=0.791096 consensus_score=697.6 fisher_strand_p_value=0.427861 frequency=1 ks_quality_p_value=1 major_base=G major_cov=115/85 major_frequency=9.950e-01 minor_base=T minor_cov=0/1 new_cov=115/85 polymorphism_frequency=9.950e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/86 RA 1109 . NC_000913 1158718 0 T C consensus_score=655.7 frequency=1 major_base=C major_cov=92/95 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/95 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/95 RA 1110 . NC_000913 1167180 0 A G bias_e_value=4155030 bias_p_value=0.895632 consensus_score=740.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.579431 major_base=G major_cov=96/116 major_frequency=9.953e-01 minor_base=A minor_cov=0/1 new_cov=96/116 polymorphism_frequency=9.953e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=0/1 total_cov=96/117 RA 1111 . NC_000913 1175607 0 A G consensus_score=876.0 frequency=1 major_base=G major_cov=143/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=143/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=143/110 RA 1112 . NC_000913 1184516 0 A G consensus_score=913.0 frequency=1 major_base=G major_cov=113/147 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=113/147 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=113/147 RA 1113 . NC_000913 1192497 0 A G consensus_score=707.6 frequency=1 major_base=G major_cov=106/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=106/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=106/98 RA 1114 . NC_000913 1199211 0 T C consensus_score=793.5 frequency=1 major_base=C major_cov=111/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/115 RA 1115 . NC_000913 1202176 0 T C consensus_score=744.7 frequency=1 major_base=C major_cov=98/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=98/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/114 RA 1116 . NC_000913 1202871 0 A G consensus_score=797.6 frequency=1 major_base=G major_cov=120/108 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=120/108 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/108 RA 1117 . NC_000913 1207158 1 . G bias_e_value=3994240 bias_p_value=0.860972 consensus_score=589.7 fisher_strand_p_value=0.636534 frequency=1 ks_quality_p_value=0.819162 major_base=G major_cov=64/105 major_frequency=9.769e-01 minor_base=. minor_cov=2/2 new_cov=64/105 polymorphism_frequency=9.769e-01 polymorphism_score=5.6 prediction=consensus ref_cov=2/2 total_cov=66/107 RA 1118 . NC_000913 1210786 0 A G consensus_score=651.1 frequency=1 major_base=G major_cov=76/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=76/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=76/112 RA 1119 . NC_000913 1212474 0 A G bias_e_value=4003930 bias_p_value=0.863061 consensus_score=710.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.524648 major_base=G major_cov=83/119 major_frequency=9.951e-01 minor_base=A minor_cov=0/1 new_cov=83/119 polymorphism_frequency=9.951e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=83/120 RA 1120 . NC_000913 1213846 0 A G bias_e_value=4639220 bias_p_value=0.999999 consensus_score=719.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998817 major_base=G major_cov=105/100 major_frequency=9.951e-01 minor_base=A minor_cov=1/0 new_cov=105/100 polymorphism_frequency=9.951e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=1/0 total_cov=106/100 RA 1121 . NC_000913 1220688 0 C T bias_e_value=4202490 bias_p_value=0.905862 consensus_score=867.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.598762 major_base=T major_cov=99/129 major_frequency=9.913e-01 minor_base=C minor_cov=1/1 new_cov=99/129 polymorphism_frequency=9.913e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/1 total_cov=100/131 RA 1122 . NC_000913 1235692 0 T C bias_e_value=2201730 bias_p_value=0.47459 consensus_score=631.1 fisher_strand_p_value=0.497268 frequency=1 ks_quality_p_value=0.345691 major_base=C major_cov=90/92 major_frequency=9.945e-01 minor_base=T minor_cov=1/0 new_cov=90/92 polymorphism_frequency=9.945e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=1/0 total_cov=91/92 RA 1123 . NC_000913 1238083 0 A G consensus_score=786.0 frequency=1 major_base=G major_cov=113/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=113/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=113/112 RA 1124 . NC_000913 1252715 0 A G bias_e_value=4639220 bias_p_value=0.999999 consensus_score=682.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998757 major_base=G major_cov=78/122 major_frequency=9.950e-01 minor_base=T minor_cov=0/1 new_cov=78/122 polymorphism_frequency=9.950e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=78/123 RA 1125 . NC_000913 1260118 0 A C bias_e_value=6.44962e-08 bias_p_value=1.39024e-14 consensus_reject=FREQUENCY_CUTOFF consensus_score=439.2 fisher_strand_p_value=3.80844e-16 frequency=2.035e-01 ks_quality_p_value=1 major_base=A major_cov=98/39 major_frequency=7.965e-01 minor_base=C minor_cov=0/35 new_cov=0/35 polymorphism_frequency=2.035e-01 polymorphism_score=16.9 prediction=polymorphism ref_cov=98/39 total_cov=98/75 RA 1126 . NC_000913 1271045 0 T G bias_e_value=2.01846e-17 bias_p_value=4.35086e-24 consensus_reject=FREQUENCY_CUTOFF consensus_score=395.1 fisher_strand_p_value=7.39101e-26 frequency=2.215e-01 ks_quality_p_value=1 major_base=T major_cov=8/108 major_frequency=7.785e-01 minor_base=G minor_cov=33/0 new_cov=33/0 polymorphism_frequency=2.215e-01 polymorphism_score=23.8 prediction=polymorphism ref_cov=8/108 total_cov=41/108 RA 1127 . NC_000913 1279054 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=549.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=83/75 major_frequency=9.937e-01 minor_base=C minor_cov=1/0 new_cov=83/75 polymorphism_frequency=9.937e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/75 RA 1128 . NC_000913 1282811 0 T C consensus_score=901.3 frequency=1 major_base=C major_cov=113/144 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=113/144 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=113/144 RA 1129 . NC_000913 1302782 0 A G consensus_score=824.1 frequency=1 major_base=G major_cov=125/111 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/111 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/111 RA 1130 . NC_000913 1305135 0 T C bias_e_value=4639210 bias_p_value=0.999997 consensus_score=815.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997635 major_base=C major_cov=106/126 major_frequency=9.957e-01 minor_base=A minor_cov=0/1 new_cov=106/126 polymorphism_frequency=9.957e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/0 total_cov=106/127 RA 1131 . NC_000913 1323486 0 C T consensus_score=1111.1 frequency=1 major_base=T major_cov=148/138 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=148/138 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=148/138 RA 1132 . NC_000913 1329903 0 A G bias_e_value=3781560 bias_p_value=0.815128 consensus_score=1026.2 fisher_strand_p_value=0.457338 frequency=1 ks_quality_p_value=1 major_base=G major_cov=159/133 major_frequency=9.966e-01 minor_base=A minor_cov=0/1 new_cov=159/133 polymorphism_frequency=9.966e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=159/134 RA 1133 . NC_000913 1330060 0 A G bias_e_value=1809780 bias_p_value=0.390105 consensus_score=1013.9 fisher_strand_p_value=0.484642 frequency=1 ks_quality_p_value=0.263082 major_base=G major_cov=141/151 major_frequency=9.966e-01 minor_base=A minor_cov=1/0 new_cov=141/151 polymorphism_frequency=9.966e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=142/151 RA 1134 . NC_000913 1335418 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=845.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999868 major_base=G major_cov=127/119 major_frequency=9.960e-01 minor_base=T minor_cov=1/0 new_cov=127/119 polymorphism_frequency=9.960e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/119 RA 1135 . NC_000913 1342604 0 G A consensus_score=945.3 frequency=1 major_base=A major_cov=148/92 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=148/92 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=148/92 RA 1136 . NC_000913 1348410 0 A G consensus_score=919.3 frequency=1 major_base=G major_cov=137/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=137/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=137/126 RA 1137 . NC_000913 1354431 0 T C consensus_score=950.5 frequency=1 major_base=C major_cov=131/134 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=131/134 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/134 RA 1138 . NC_000913 1358270 0 G A bias_e_value=2760390 bias_p_value=0.595012 consensus_score=1219.1 fisher_strand_p_value=0.248889 frequency=1 ks_quality_p_value=0.999942 major_base=A major_cov=155/165 major_frequency=9.907e-01 minor_base=G minor_cov=0/3 new_cov=155/165 polymorphism_frequency=9.907e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=0/3 total_cov=155/168 RA 1139 . NC_000913 1362462 0 T C consensus_score=951.7 frequency=1 major_base=C major_cov=121/153 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=121/153 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=121/153 RA 1140 . NC_000913 1372245 0 A G bias_e_value=1930910 bias_p_value=0.416214 consensus_score=1060.8 fisher_strand_p_value=0.483444 frequency=1 ks_quality_p_value=0.290598 major_base=G major_cov=156/145 major_frequency=9.967e-01 minor_base=T minor_cov=0/1 new_cov=156/145 polymorphism_frequency=9.967e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=0/0 total_cov=156/146 RA 1141 . NC_000913 1383611 0 A G consensus_score=866.5 frequency=1 major_base=G major_cov=132/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=132/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=132/116 RA 1142 . NC_000913 1391027 0 A G consensus_score=963.2 frequency=1 major_base=G major_cov=134/139 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=134/139 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=134/139 RA 1143 . NC_000913 1396204 0 T C consensus_score=925.9 frequency=1 major_base=C major_cov=137/130 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=137/130 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=137/130 RA 1144 . NC_000913 1397365 0 A G consensus_score=1010.5 frequency=1 major_base=G major_cov=122/168 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=122/168 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=122/168 RA 1145 . NC_000913 1408072 0 A G bias_e_value=2504670 bias_p_value=0.539891 consensus_score=817.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.211384 major_base=G major_cov=130/110 major_frequency=9.959e-01 minor_base=A minor_cov=1/0 new_cov=130/110 polymorphism_frequency=9.959e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=131/111 RA 1146 . NC_000913 1415990 1 . T bias_e_value=4599650 bias_p_value=0.991471 consensus_score=839.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.872269 major_base=T major_cov=115/95 major_frequency=9.906e-01 minor_base=. minor_cov=1/1 new_cov=115/95 polymorphism_frequency=9.906e-01 polymorphism_score=-0.4 prediction=consensus ref_cov=1/1 total_cov=116/96 RA 1147 . NC_000913 1428051 0 G A bias_e_value=4276570 bias_p_value=0.92183 consensus_score=851.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.631622 major_base=A major_cov=121/108 major_frequency=9.957e-01 minor_base=G minor_cov=1/0 new_cov=121/108 polymorphism_frequency=9.957e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=1/0 total_cov=122/108 RA 1148 . NC_000913 1442757 0 C T consensus_score=1073.3 frequency=1 major_base=T major_cov=162/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=162/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=162/116 RA 1149 . NC_000913 1445328 0 A G consensus_score=844.6 frequency=1 major_base=G major_cov=101/136 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=101/136 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=101/136 RA 1150 . NC_000913 1445862 0 T C bias_e_value=3900990 bias_p_value=0.840872 consensus_score=859.7 fisher_strand_p_value=0.49187 frequency=1 ks_quality_p_value=1 major_base=C major_cov=125/120 major_frequency=9.959e-01 minor_base=G minor_cov=0/1 new_cov=125/120 polymorphism_frequency=9.959e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/121 RA 1151 . NC_000913 1456536 0 A G bias_e_value=3455930 bias_p_value=0.744937 consensus_score=754.7 fisher_strand_p_value=0.493151 frequency=1 ks_quality_p_value=0.764825 major_base=G major_cov=107/111 major_frequency=9.954e-01 minor_base=A minor_cov=1/0 new_cov=107/111 polymorphism_frequency=9.954e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=108/111 RA 1152 . NC_000913 1457617 0 T C bias_e_value=3781780 bias_p_value=0.815176 consensus_score=773.8 fisher_strand_p_value=0.457399 frequency=1 ks_quality_p_value=1 major_base=C major_cov=101/121 major_frequency=9.955e-01 minor_base=A minor_cov=1/0 new_cov=101/121 polymorphism_frequency=9.955e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/121 RA 1153 . NC_000913 1460324 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=878.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999514 major_base=G major_cov=122/134 major_frequency=9.961e-01 minor_base=T minor_cov=0/1 new_cov=122/134 polymorphism_frequency=9.961e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=122/135 RA 1154 . NC_000913 1482256 0 C T bias_e_value=4639220 bias_p_value=1 consensus_score=884.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=109/128 major_frequency=9.916e-01 minor_base=C minor_cov=1/1 new_cov=109/128 polymorphism_frequency=9.916e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=1/1 total_cov=112/129 RA 1155 . NC_000913 1492778 0 A G consensus_score=807.5 frequency=1 major_base=G major_cov=105/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=105/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/125 RA 1156 . NC_000913 1497509 0 A G bias_e_value=1591180 bias_p_value=0.342985 consensus_score=828.3 fisher_strand_p_value=0.430962 frequency=1 ks_quality_p_value=0.245019 major_base=G major_cov=136/102 major_frequency=9.958e-01 minor_base=A minor_cov=0/1 new_cov=136/102 polymorphism_frequency=9.958e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=136/103 RA 1157 . NC_000913 1503894 0 T C consensus_score=834.3 frequency=1 major_base=C major_cov=124/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/116 RA 1158 . NC_000913 1506198 0 G A bias_e_value=3728290 bias_p_value=0.803646 consensus_score=963.5 fisher_strand_p_value=0.48 frequency=1 ks_quality_p_value=0.92282 major_base=A major_cov=130/119 major_frequency=9.960e-01 minor_base=G minor_cov=0/1 new_cov=130/119 polymorphism_frequency=9.960e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=0/1 total_cov=130/120 RA 1159 . NC_000913 1512523 0 A G consensus_score=634.4 frequency=1 major_base=G major_cov=88/97 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=88/97 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=88/97 RA 1160 . NC_000913 1520878 0 A G consensus_score=775.3 frequency=1 major_base=G major_cov=102/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=102/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/122 RA 1161 . NC_000913 1520926 0 A G consensus_score=838.7 frequency=1 major_base=G major_cov=112/129 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/129 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/129 RA 1162 . NC_000913 1521583 0 A T consensus_score=928.2 frequency=1 major_base=T major_cov=122/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=122/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=122/126 RA 1163 . NC_000913 1533898 0 A G bias_e_value=4636990 bias_p_value=0.999518 consensus_score=900.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.969114 major_base=G major_cov=132/123 major_frequency=9.961e-01 minor_base=A minor_cov=1/0 new_cov=132/123 polymorphism_frequency=9.961e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=1/0 total_cov=133/123 RA 1164 . NC_000913 1535053 0 A G consensus_score=866.8 frequency=1 major_base=G major_cov=139/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=139/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=139/113 RA 1165 . NC_000913 1538045 0 G A consensus_score=830.6 frequency=1 major_base=A major_cov=116/97 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/97 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/97 RA 1166 . NC_000913 1545666 0 A G bias_e_value=1821180 bias_p_value=0.392561 consensus_score=677.2 fisher_strand_p_value=0.477833 frequency=1 ks_quality_p_value=0.269333 major_base=G major_cov=106/96 major_frequency=9.951e-01 minor_base=A minor_cov=0/1 new_cov=106/96 polymorphism_frequency=9.951e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=106/97 RA 1167 . NC_000913 1548006 0 C T consensus_score=973.2 frequency=1 major_base=T major_cov=120/131 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=120/131 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/131 RA 1168 . NC_000913 1548687 0 A C bias_e_value=3.16604e-13 bias_p_value=6.82451e-20 consensus_reject=FREQUENCY_CUTOFF consensus_score=472.6 fisher_strand_p_value=1.39209e-21 frequency=2.193e-01 ks_quality_p_value=1 major_base=A major_cov=114/32 major_frequency=7.807e-01 minor_base=C minor_cov=0/41 new_cov=0/41 polymorphism_frequency=2.193e-01 polymorphism_score=24.8 prediction=polymorphism ref_cov=114/32 total_cov=114/74 RA 1169 . NC_000913 1548911 0 T C consensus_score=889.4 frequency=1 major_base=C major_cov=107/152 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=107/152 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/152 RA 1170 . NC_000913 1553724 1 . G bias_e_value=3618770 bias_p_value=0.780038 consensus_score=474.2 fisher_strand_p_value=0.456522 frequency=1 ks_quality_p_value=0.909184 major_base=G major_cov=75/62 major_frequency=9.928e-01 minor_base=. minor_cov=0/1 new_cov=75/62 polymorphism_frequency=9.928e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=0/1 total_cov=75/63 RA 1171 . NC_000913 1571055 0 T C consensus_score=860.7 frequency=1 major_base=C major_cov=128/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=128/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/114 RA 1172 . NC_000913 1585075 0 A G consensus_score=612.6 frequency=1 major_base=G major_cov=82/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=82/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=82/94 RA 1173 . NC_000913 1586583 0 T C bias_e_value=3813550 bias_p_value=0.822025 consensus_score=693.2 fisher_strand_p_value=0.472362 frequency=1 ks_quality_p_value=0.98709 major_base=C major_cov=105/93 major_frequency=9.950e-01 minor_base=T minor_cov=0/1 new_cov=105/93 polymorphism_frequency=9.950e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=0/1 total_cov=105/94 RA 1174 . NC_000913 1592149 0 C . bias_e_value=4639220 bias_p_value=1 consensus_score=932.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=94/105 major_frequency=9.950e-01 minor_base=C minor_cov=0/1 new_cov=94/105 polymorphism_frequency=9.950e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/1 total_cov=94/106 RA 1175 . NC_000913 1603543 0 T C bias_e_value=3871160 bias_p_value=0.834442 consensus_score=599.5 fisher_strand_p_value=0.482955 frequency=1 ks_quality_p_value=0.999935 major_base=C major_cov=91/84 major_frequency=9.943e-01 minor_base=T minor_cov=0/1 new_cov=91/84 polymorphism_frequency=9.943e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=91/85 RA 1176 . NC_000913 1605226 0 G A consensus_score=752.9 frequency=1 major_base=A major_cov=117/87 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=117/87 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/87 RA 1177 . NC_000913 1607710 0 A G consensus_score=869.7 frequency=1 major_base=G major_cov=123/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=123/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/125 RA 1178 . NC_000913 1608034 0 A G consensus_score=886.0 frequency=1 major_base=G major_cov=131/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=131/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/119 RA 1179 . NC_000913 1609760 0 G A consensus_score=932.4 frequency=1 major_base=A major_cov=127/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/112 RA 1180 . NC_000913 1616532 0 G A consensus_score=792.9 frequency=1 major_base=A major_cov=101/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=101/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=101/105 RA 1181 . NC_000913 1634019 0 T C bias_e_value=4511320 bias_p_value=0.97243 consensus_reject=FREQUENCY_CUTOFF consensus_score=18.0 fisher_strand_p_value=1 frequency=7.097e-01 ks_quality_p_value=0.774562 major_base=C major_cov=8/14 major_frequency=7.097e-01 minor_base=T minor_cov=3/6 new_cov=8/14 polymorphism_frequency=7.097e-01 polymorphism_score=19.1 prediction=polymorphism ref_cov=3/6 total_cov=11/20 RA 1182 . NC_000913 1634023 0 A T bias_e_value=3330910 bias_p_value=0.717989 consensus_reject=FREQUENCY_CUTOFF consensus_score=37.9 fisher_strand_p_value=1 frequency=5.946e-01 ks_quality_p_value=0.350526 major_base=T major_cov=8/14 major_frequency=5.946e-01 minor_base=A minor_cov=6/9 new_cov=8/14 polymorphism_frequency=5.946e-01 polymorphism_score=44.4 prediction=polymorphism ref_cov=6/9 total_cov=14/23 RA 1183 . NC_000913 1634026 0 T G bias_e_value=2705470 bias_p_value=0.583173 consensus_reject=FREQUENCY_CUTOFF consensus_score=95.9 fisher_strand_p_value=0.269185 frequency=4.231e-01 ks_quality_p_value=0.893311 major_base=T major_cov=16/14 major_frequency=5.769e-01 minor_base=G minor_cov=8/14 new_cov=8/14 polymorphism_frequency=4.231e-01 polymorphism_score=82.0 prediction=polymorphism ref_cov=16/14 total_cov=24/28 RA 1184 . NC_000913 1634029 0 G C bias_e_value=3628500 bias_p_value=0.782136 consensus_reject=FREQUENCY_CUTOFF consensus_score=97.4 fisher_strand_p_value=0.417456 frequency=4.000e-01 ks_quality_p_value=1 major_base=G major_cov=16/17 major_frequency=6.000e-01 minor_base=C minor_cov=8/14 new_cov=8/14 polymorphism_frequency=4.000e-01 polymorphism_score=69.3 prediction=polymorphism ref_cov=16/17 total_cov=24/31 RA 1185 . NC_000913 1634047 0 A C bias_e_value=1520340 bias_p_value=0.327714 consensus_reject=FREQUENCY_CUTOFF consensus_score=272.3 fisher_strand_p_value=0.131361 frequency=2.020e-01 ks_quality_p_value=0.752869 major_base=A major_cov=41/38 major_frequency=7.980e-01 minor_base=C minor_cov=6/14 new_cov=6/14 polymorphism_frequency=2.020e-01 polymorphism_score=69.6 prediction=polymorphism ref_cov=41/38 total_cov=47/52 RA 1186 . NC_000913 1634484 0 A G bias_e_value=853097 bias_p_value=0.183888 consensus_reject=FREQUENCY_CUTOFF consensus_score=536.6 fisher_strand_p_value=0.600922 frequency=2.081e-01 ks_quality_p_value=0.0745304 major_base=A major_cov=72/84 major_frequency=7.919e-01 minor_base=G minor_cov=21/20 new_cov=21/20 polymorphism_frequency=2.081e-01 polymorphism_score=99.4 prediction=polymorphism ref_cov=72/84 total_cov=93/104 RA 1187 . NC_000913 1634488 0 T A bias_e_value=4499120 bias_p_value=0.969801 consensus_reject=FREQUENCY_CUTOFF consensus_score=520.9 fisher_strand_p_value=1 frequency=2.316e-01 ks_quality_p_value=0.764529 major_base=T major_cov=68/68 major_frequency=7.684e-01 minor_base=A minor_cov=21/20 new_cov=21/20 polymorphism_frequency=2.316e-01 polymorphism_score=138.1 prediction=polymorphism ref_cov=68/68 total_cov=89/88 RA 1188 . NC_000913 1634489 0 A C bias_e_value=3986860 bias_p_value=0.859382 consensus_reject=FREQUENCY_CUTOFF consensus_score=479.6 fisher_strand_p_value=1 frequency=2.278e-01 ks_quality_p_value=0.518993 major_base=A major_cov=70/69 major_frequency=7.722e-01 minor_base=C minor_cov=21/20 new_cov=21/20 polymorphism_frequency=2.278e-01 polymorphism_score=147.7 prediction=polymorphism ref_cov=70/69 total_cov=91/89 RA 1189 . NC_000913 1634491 0 A G bias_e_value=3157790 bias_p_value=0.680672 consensus_reject=FREQUENCY_CUTOFF consensus_score=498.7 fisher_strand_p_value=1 frequency=2.265e-01 ks_quality_p_value=0.316552 major_base=A major_cov=70/70 major_frequency=7.735e-01 minor_base=G minor_cov=21/20 new_cov=21/20 polymorphism_frequency=2.265e-01 polymorphism_score=101.6 prediction=polymorphism ref_cov=70/70 total_cov=91/90 RA 1190 . NC_000913 1634493 0 A T bias_e_value=4369020 bias_p_value=0.941756 consensus_reject=FREQUENCY_CUTOFF consensus_score=535.4 fisher_strand_p_value=1 frequency=2.291e-01 ks_quality_p_value=0.678721 major_base=A major_cov=70/68 major_frequency=7.709e-01 minor_base=T minor_cov=21/20 new_cov=21/20 polymorphism_frequency=2.291e-01 polymorphism_score=139.1 prediction=polymorphism ref_cov=70/68 total_cov=91/88 RA 1191 . NC_000913 1634500 0 T A bias_e_value=4046.77 bias_p_value=0.000872294 consensus_reject=FREQUENCY_CUTOFF consensus_score=621.2 fisher_strand_p_value=0.725811 frequency=2.020e-01 ks_quality_p_value=0.00011573 major_base=T major_cov=90/72 major_frequency=7.980e-01 minor_base=A minor_cov=21/20 new_cov=21/20 polymorphism_frequency=2.020e-01 polymorphism_score=142.4 prediction=polymorphism ref_cov=90/72 total_cov=111/92 RA 1192 . NC_000913 1634502 0 A G bias_e_value=196558 bias_p_value=0.0423687 consensus_reject=FREQUENCY_CUTOFF consensus_score=567.1 fisher_strand_p_value=0.725618 frequency=2.050e-01 ks_quality_p_value=0.00982385 major_base=A major_cov=88/71 major_frequency=7.950e-01 minor_base=G minor_cov=21/20 new_cov=21/20 polymorphism_frequency=2.050e-01 polymorphism_score=99.8 prediction=polymorphism ref_cov=88/71 total_cov=109/91 RA 1193 . NC_000913 1634507 1 . G bias_e_value=1131.96 bias_p_value=0.000243997 consensus_reject=FREQUENCY_CUTOFF consensus_score=667.0 fisher_strand_p_value=0.861141 frequency=2.040e-01 ks_quality_p_value=2.40422e-05 major_base=. major_cov=86/74 major_frequency=7.960e-01 minor_base=G minor_cov=21/20 new_cov=21/20 polymorphism_frequency=2.040e-01 polymorphism_score=161.0 prediction=polymorphism ref_cov=86/74 total_cov=107/94 RA 1194 . NC_000913 1636465 0 T C bias_e_value=3671580 bias_p_value=0.791421 consensus_score=581.9 fisher_strand_p_value=0.461078 frequency=1 ks_quality_p_value=0.928787 major_base=C major_cov=90/76 major_frequency=9.940e-01 minor_base=T minor_cov=0/1 new_cov=90/76 polymorphism_frequency=9.940e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=90/77 RA 1195 . NC_000913 1650355 0 T C consensus_score=807.7 frequency=1 major_base=C major_cov=106/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=106/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=106/119 RA 1196 . NC_000913 1652626 0 T C bias_e_value=4639190 bias_p_value=0.999992 consensus_score=791.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996075 major_base=C major_cov=117/108 major_frequency=9.956e-01 minor_base=G minor_cov=1/0 new_cov=117/108 polymorphism_frequency=9.956e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=0/0 total_cov=118/108 RA 1197 . NC_000913 1668733 0 A G consensus_score=764.2 frequency=1 major_base=G major_cov=113/106 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=113/106 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=113/106 RA 1198 . NC_000913 1671621 0 A G consensus_score=767.7 frequency=1 major_base=G major_cov=117/99 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=117/99 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/99 RA 1199 . NC_000913 1672529 0 T C bias_e_value=2230280 bias_p_value=0.480745 consensus_score=628.5 fisher_strand_p_value=0.467033 frequency=1 ks_quality_p_value=0.375598 major_base=C major_cov=97/84 major_frequency=9.945e-01 minor_base=T minor_cov=0/1 new_cov=97/84 polymorphism_frequency=9.945e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=97/85 RA 1200 . NC_000913 1672622 0 T C bias_e_value=3762190 bias_p_value=0.810953 consensus_score=734.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.45204 major_base=C major_cov=104/105 major_frequency=9.952e-01 minor_base=T minor_cov=0/1 new_cov=104/105 polymorphism_frequency=9.952e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=104/106 RA 1201 . NC_000913 1679869 0 A G consensus_score=740.1 frequency=1 major_base=G major_cov=104/104 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/104 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/104 RA 1202 . NC_000913 1680793 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=702.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=92/113 major_frequency=9.951e-01 minor_base=A minor_cov=0/1 new_cov=92/113 polymorphism_frequency=9.951e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/114 RA 1203 . NC_000913 1681154 0 T C consensus_score=768.2 frequency=1 major_base=C major_cov=112/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/105 RA 1204 . NC_000913 1683560 1 . C bias_e_value=3419900 bias_p_value=0.737171 consensus_score=639.4 fisher_strand_p_value=0.369295 frequency=1 ks_quality_p_value=1 major_base=C major_cov=95/93 major_frequency=9.741e-01 minor_base=. minor_cov=4/1 new_cov=95/93 polymorphism_frequency=9.741e-01 polymorphism_score=8.0 prediction=consensus ref_cov=4/1 total_cov=99/94 RA 1205 . NC_000913 1705052 0 T C consensus_score=527.5 frequency=1 major_base=C major_cov=50/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/109 RA 1206 . NC_000913 1715389 0 G A consensus_score=781.4 frequency=1 major_base=A major_cov=108/91 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=108/91 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=108/91 RA 1207 . NC_000913 1715713 0 T C consensus_score=865.7 frequency=1 major_base=C major_cov=144/104 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=144/104 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=144/104 RA 1208 . NC_000913 1718191 0 A G consensus_score=744.9 frequency=1 major_base=G major_cov=87/128 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=87/128 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=87/128 RA 1209 . NC_000913 1722918 0 T A consensus_score=759.8 frequency=1 major_base=A major_cov=112/85 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/85 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/85 RA 1210 . NC_000913 1728403 0 T C consensus_score=663.4 frequency=1 major_base=C major_cov=101/96 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=101/96 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=101/96 RA 1211 . NC_000913 1730968 0 T C consensus_score=725.0 frequency=1 major_base=C major_cov=107/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=107/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/101 RA 1212 . NC_000913 1739051 0 A G consensus_score=785.1 frequency=1 major_base=G major_cov=94/127 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=94/127 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=94/127 RA 1213 . NC_000913 1741574 0 A G consensus_score=563.1 frequency=1 major_base=G major_cov=82/79 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=82/79 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=82/79 RA 1214 . NC_000913 1741575 0 G A bias_e_value=4639220 bias_p_value=1 consensus_score=613.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=81/79 major_frequency=9.938e-01 minor_base=G minor_cov=1/0 new_cov=81/79 polymorphism_frequency=9.938e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=82/79 RA 1215 . NC_000913 1746888 0 T C bias_e_value=1982020 bias_p_value=0.427232 consensus_score=728.3 fisher_strand_p_value=0.41784 frequency=1 ks_quality_p_value=0.349797 major_base=C major_cov=124/88 major_frequency=9.953e-01 minor_base=T minor_cov=0/1 new_cov=124/88 polymorphism_frequency=9.953e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=124/89 RA 1216 . NC_000913 1747993 0 A C consensus_score=592.3 frequency=1 major_base=C major_cov=99/72 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=99/72 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=99/72 RA 1217 . NC_000913 1755127 0 T C consensus_score=613.7 frequency=1 major_base=C major_cov=70/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=70/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=70/105 RA 1218 . NC_000913 1764932 0 A G consensus_score=671.6 frequency=1 major_base=G major_cov=101/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=101/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=101/94 RA 1219 . NC_000913 1766232 0 T C consensus_score=729.4 frequency=1 major_base=C major_cov=95/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=95/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=95/112 RA 1220 . NC_000913 1767503 0 A G bias_e_value=4551990 bias_p_value=0.981198 consensus_score=655.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.812457 major_base=G major_cov=96/96 major_frequency=9.846e-01 minor_base=. minor_cov=2/1 new_cov=96/96 polymorphism_frequency=9.846e-01 polymorphism_score=1.8 prediction=consensus ref_cov=0/0 total_cov=98/97 RA 1221 . NC_000913 1768131 0 T C consensus_score=454.5 frequency=1 major_base=C major_cov=61/75 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/75 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/75 RA 1222 . NC_000913 1782304 0 A T bias_e_value=3107350 bias_p_value=0.669799 consensus_score=610.0 fisher_strand_p_value=0.421384 frequency=1 ks_quality_p_value=0.729075 major_base=T major_cov=92/66 major_frequency=9.937e-01 minor_base=A minor_cov=0/1 new_cov=92/66 polymorphism_frequency=9.937e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=0/1 total_cov=92/67 RA 1223 . NC_000913 1799252 0 T C bias_e_value=2957130 bias_p_value=0.637419 consensus_score=724.4 fisher_strand_p_value=0.442857 frequency=1 ks_quality_p_value=0.634014 major_base=C major_cov=117/92 major_frequency=9.952e-01 minor_base=T minor_cov=0/1 new_cov=117/92 polymorphism_frequency=9.952e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=117/93 RA 1224 . NC_000913 1804010 0 A G consensus_score=539.6 frequency=1 major_base=G major_cov=65/88 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=65/88 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=65/88 RA 1225 . NC_000913 1812482 0 T C consensus_score=722.6 frequency=1 major_base=C major_cov=100/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=100/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=100/105 RA 1226 . NC_000913 1831123 0 T C consensus_score=739.4 frequency=1 major_base=C major_cov=102/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=102/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/112 RA 1227 . NC_000913 1833580 0 T C consensus_score=649.3 frequency=1 major_base=C major_cov=107/82 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=107/82 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/82 RA 1228 . NC_000913 1841922 0 T C bias_e_value=2673590 bias_p_value=0.576301 consensus_score=722.7 fisher_strand_p_value=0.497561 frequency=1 ks_quality_p_value=0.473667 major_base=C major_cov=103/101 major_frequency=9.951e-01 minor_base=T minor_cov=0/1 new_cov=103/101 polymorphism_frequency=9.951e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=103/102 RA 1229 . NC_000913 1846045 0 T C consensus_score=786.6 frequency=1 major_base=C major_cov=109/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/114 RA 1230 . NC_000913 1848059 0 T C bias_e_value=1826920 bias_p_value=0.393799 consensus_score=643.7 fisher_strand_p_value=0.433155 frequency=1 ks_quality_p_value=0.298508 major_base=C major_cov=106/80 major_frequency=9.947e-01 minor_base=T minor_cov=0/1 new_cov=106/80 polymorphism_frequency=9.947e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=106/81 RA 1231 . NC_000913 1852569 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=723.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=96/109 major_frequency=9.951e-01 minor_base=T minor_cov=0/1 new_cov=96/109 polymorphism_frequency=9.951e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=97/110 RA 1232 . NC_000913 1858723 0 C T consensus_score=727.4 frequency=1 major_base=T major_cov=91/103 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/103 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/103 RA 1233 . NC_000913 1860370 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=788.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999961 major_base=C major_cov=130/95 major_frequency=9.956e-01 minor_base=A minor_cov=1/0 new_cov=130/95 polymorphism_frequency=9.956e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/95 RA 1234 . NC_000913 1862301 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=656.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.9991 major_base=C major_cov=88/100 major_frequency=9.947e-01 minor_base=T minor_cov=0/1 new_cov=88/100 polymorphism_frequency=9.947e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=0/1 total_cov=88/101 RA 1235 . NC_000913 1869850 1 . G bias_e_value=2897880 bias_p_value=0.624648 consensus_score=658.7 fisher_strand_p_value=0.455026 frequency=1 ks_quality_p_value=0.595268 major_base=G major_cov=85/103 major_frequency=9.947e-01 minor_base=. minor_cov=1/0 new_cov=85/103 polymorphism_frequency=9.947e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=1/0 total_cov=86/103 RA 1236 . NC_000913 1870605 0 T C consensus_score=785.1 frequency=1 major_base=C major_cov=111/111 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/111 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/111 RA 1237 . NC_000913 1870741 0 T C consensus_score=807.9 frequency=1 major_base=C major_cov=125/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/105 RA 1238 . NC_000913 1882953 0 T C consensus_score=632.5 frequency=1 major_base=C major_cov=84/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=84/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/98 RA 1239 . NC_000913 1885627 0 A G consensus_score=750.8 frequency=1 major_base=G major_cov=103/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=103/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=103/112 RA 1240 . NC_000913 1888029 0 T C bias_e_value=2390800 bias_p_value=0.515344 consensus_score=432.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.19596 major_base=C major_cov=124/4 major_frequency=9.922e-01 minor_base=T minor_cov=1/0 new_cov=124/4 polymorphism_frequency=9.922e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=1/0 total_cov=125/4 RA 1241 . NC_000913 1893186 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=794.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=113/112 major_frequency=9.956e-01 minor_base=G minor_cov=1/0 new_cov=113/112 polymorphism_frequency=9.956e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/112 RA 1242 . NC_000913 1896635 0 T C consensus_score=895.9 frequency=1 major_base=C major_cov=128/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=128/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/126 RA 1243 . NC_000913 1899288 0 G A consensus_score=973.0 frequency=1 major_base=A major_cov=104/144 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/144 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/144 RA 1244 . NC_000913 1902757 0 T C consensus_score=590.2 frequency=1 major_base=C major_cov=73/97 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=73/97 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=73/97 RA 1245 . NC_000913 1904845 0 T C bias_e_value=2358940 bias_p_value=0.508478 consensus_score=756.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.191775 major_base=C major_cov=126/94 major_frequency=9.910e-01 minor_base=T minor_cov=1/1 new_cov=126/94 polymorphism_frequency=9.910e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=1/1 total_cov=127/95 RA 1246 . NC_000913 1905091 0 T C bias_e_value=4638680 bias_p_value=0.999884 consensus_score=781.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.984795 major_base=C major_cov=121/107 major_frequency=9.956e-01 minor_base=T minor_cov=1/0 new_cov=121/107 polymorphism_frequency=9.956e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=1/0 total_cov=123/107 RA 1247 . NC_000913 1930950 0 G A bias_e_value=2644740 bias_p_value=0.570082 consensus_score=624.9 fisher_strand_p_value=0.231402 frequency=1 ks_quality_p_value=1 major_base=A major_cov=89/81 major_frequency=9.884e-01 minor_base=T minor_cov=0/2 new_cov=89/81 polymorphism_frequency=9.884e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=89/83 RA 1248 . NC_000913 1933325 0 A G consensus_score=767.0 frequency=1 major_base=G major_cov=111/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/112 RA 1249 . NC_000913 1934800 0 T C consensus_score=774.0 frequency=1 major_base=C major_cov=99/123 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=99/123 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=99/123 RA 1250 . NC_000913 1949227 0 A T bias_e_value=3637160 bias_p_value=0.784003 consensus_reject=FREQUENCY_CUTOFF consensus_score=639.8 fisher_strand_p_value=0.503863 frequency=2.569e-01 ks_quality_p_value=0.832766 major_base=A major_cov=111/103 major_frequency=7.431e-01 minor_base=T minor_cov=35/39 new_cov=35/39 polymorphism_frequency=2.569e-01 polymorphism_score=262.0 prediction=polymorphism ref_cov=111/103 total_cov=146/142 RA 1251 . NC_000913 1949344 0 G A bias_e_value=675388 bias_p_value=0.145582 consensus_reject=FREQUENCY_CUTOFF consensus_score=10.9 fisher_strand_p_value=0.0376438 frequency=4.829e-01 ks_quality_p_value=0.876725 major_base=G major_cov=123/89 major_frequency=5.171e-01 minor_base=A minor_cov=94/104 new_cov=94/104 polymorphism_frequency=4.829e-01 polymorphism_score=inf prediction=polymorphism ref_cov=123/89 total_cov=217/193 RA 1252 . NC_000913 1949356 0 T C bias_e_value=579.509 bias_p_value=0.000124915 consensus_reject=FREQUENCY_CUTOFF consensus_score=123.8 fisher_strand_p_value=0.0290786 frequency=4.744e-01 ks_quality_p_value=0.000343256 major_base=T major_cov=142/94 major_frequency=5.256e-01 minor_base=C minor_cov=106/107 new_cov=106/107 polymorphism_frequency=4.744e-01 polymorphism_score=inf prediction=polymorphism ref_cov=142/94 total_cov=248/201 RA 1253 . NC_000913 1949359 0 C T bias_e_value=439987 bias_p_value=0.0948408 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=1.8 fisher_strand_p_value=0.0351404 frequency=4.772e-01 ks_quality_p_value=0.544554 major_base=C major_cov=136/93 major_frequency=5.228e-01 minor_base=T minor_cov=103/106 new_cov=103/106 polymorphism_frequency=4.772e-01 polymorphism_score=inf prediction=polymorphism ref_cov=136/93 total_cov=239/199 RA 1254 . NC_000913 1949362 0 C T bias_e_value=195486 bias_p_value=0.0421378 consensus_reject=FREQUENCY_CUTOFF consensus_score=51.4 fisher_strand_p_value=0.0257029 frequency=4.596e-01 ks_quality_p_value=0.275521 major_base=C major_cov=141/93 major_frequency=5.404e-01 minor_base=T minor_cov=98/101 new_cov=98/101 polymorphism_frequency=4.596e-01 polymorphism_score=inf prediction=polymorphism ref_cov=141/93 total_cov=239/194 RA 1255 . NC_000913 1949410 0 C T bias_e_value=1667860 bias_p_value=0.359512 consensus_reject=FREQUENCY_CUTOFF consensus_score=216.9 fisher_strand_p_value=0.207865 frequency=4.085e-01 ks_quality_p_value=0.54391 major_base=C major_cov=156/109 major_frequency=5.915e-01 minor_base=T minor_cov=96/87 new_cov=96/87 polymorphism_frequency=4.085e-01 polymorphism_score=inf prediction=polymorphism ref_cov=156/109 total_cov=252/196 RA 1256 . NC_000913 1949411 0 A C bias_e_value=2467480 bias_p_value=0.531873 consensus_reject=FREQUENCY_CUTOFF consensus_score=209.4 fisher_strand_p_value=0.206264 frequency=4.131e-01 ks_quality_p_value=1 major_base=A major_cov=153/107 major_frequency=5.869e-01 minor_base=C minor_cov=96/87 new_cov=96/87 polymorphism_frequency=4.131e-01 polymorphism_score=inf prediction=polymorphism ref_cov=153/107 total_cov=249/194 RA 1257 . NC_000913 1949436 0 A G bias_e_value=372198 bias_p_value=0.0802285 consensus_reject=FREQUENCY_CUTOFF consensus_score=321.6 fisher_strand_p_value=0.149024 frequency=4.138e-01 ks_quality_p_value=0.104237 major_base=A major_cov=152/86 major_frequency=5.862e-01 minor_base=G minor_cov=95/73 new_cov=95/73 polymorphism_frequency=4.138e-01 polymorphism_score=inf prediction=polymorphism ref_cov=152/86 total_cov=247/159 RA 1258 . NC_000913 1949472 0 G T bias_e_value=598472 bias_p_value=0.129003 consensus_reject=FREQUENCY_CUTOFF consensus_score=505.7 fisher_strand_p_value=0.0283492 frequency=3.221e-01 ks_quality_p_value=0.996447 major_base=G major_cov=125/56 major_frequency=6.779e-01 minor_base=T minor_cov=47/39 new_cov=47/39 polymorphism_frequency=3.221e-01 polymorphism_score=241.7 prediction=polymorphism ref_cov=125/56 total_cov=172/96 RA 1259 . NC_000913 1973386 0 A G bias_e_value=4082360 bias_p_value=0.879968 consensus_score=946.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.551942 major_base=G major_cov=127/144 major_frequency=9.963e-01 minor_base=A minor_cov=0/1 new_cov=127/144 polymorphism_frequency=9.963e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=0/1 total_cov=127/145 RA 1260 . NC_000913 1973565 0 C T consensus_score=746.1 frequency=1 major_base=T major_cov=90/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=90/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=90/101 RA 1261 . NC_000913 1973920 0 A G bias_e_value=1607590 bias_p_value=0.346522 consensus_score=809.7 fisher_strand_p_value=0.201078 frequency=1 ks_quality_p_value=0.532989 major_base=G major_cov=105/131 major_frequency=9.916e-01 minor_base=A minor_cov=2/0 new_cov=105/131 polymorphism_frequency=9.916e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=2/0 total_cov=108/131 RA 1262 . NC_000913 1980939 1 . C bias_e_value=2120790 bias_p_value=0.457145 consensus_score=660.9 fisher_strand_p_value=0.16232 frequency=1 ks_quality_p_value=0.998975 major_base=C major_cov=116/79 major_frequency=9.750e-01 minor_base=. minor_cov=1/4 new_cov=116/79 polymorphism_frequency=9.750e-01 polymorphism_score=7.6 prediction=consensus ref_cov=1/4 total_cov=117/83 RA 1263 . NC_000913 1981668 0 A G bias_e_value=3829880 bias_p_value=0.825544 consensus_score=783.9 fisher_strand_p_value=0.471366 frequency=1 ks_quality_p_value=0.999026 major_base=G major_cov=120/106 major_frequency=9.956e-01 minor_base=A minor_cov=0/1 new_cov=120/106 polymorphism_frequency=9.956e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=0/1 total_cov=120/107 RA 1264 . NC_000913 1982766 0 C T bias_e_value=4639220 bias_p_value=1 consensus_score=859.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999959 major_base=T major_cov=108/112 major_frequency=9.955e-01 minor_base=G minor_cov=0/1 new_cov=108/112 polymorphism_frequency=9.955e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=108/113 RA 1265 . NC_000913 1984089 0 A G consensus_score=764.5 frequency=1 major_base=G major_cov=107/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=107/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/109 RA 1266 . NC_000913 1995537 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=775.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=98/123 major_frequency=9.955e-01 minor_base=A minor_cov=0/1 new_cov=98/123 polymorphism_frequency=9.955e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/124 RA 1267 . NC_000913 1995724 0 A G consensus_score=759.4 frequency=1 major_base=G major_cov=109/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/110 RA 1268 . NC_000913 1999941 0 A C bias_e_value=3.21955e-13 bias_p_value=6.93984e-20 consensus_reject=FREQUENCY_CUTOFF consensus_score=354.1 fisher_strand_p_value=1.41611e-21 frequency=2.638e-01 ks_quality_p_value=1 major_base=A major_cov=94/26 major_frequency=7.362e-01 minor_base=C minor_cov=0/43 new_cov=0/43 polymorphism_frequency=2.638e-01 polymorphism_score=47.9 prediction=polymorphism ref_cov=94/26 total_cov=94/70 RA 1269 . NC_000913 2006874 0 A G bias_e_value=2042290 bias_p_value=0.440222 consensus_score=808.3 fisher_strand_p_value=0.493671 frequency=1 ks_quality_p_value=0.309915 major_base=G major_cov=120/116 major_frequency=9.958e-01 minor_base=A minor_cov=0/1 new_cov=120/116 polymorphism_frequency=9.958e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=120/117 RA 1270 . NC_000913 2008476 1 . A bias_e_value=4626660 bias_p_value=0.997293 consensus_score=748.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.927328 major_base=A major_cov=85/105 major_frequency=9.948e-01 minor_base=. minor_cov=0/1 new_cov=85/105 polymorphism_frequency=9.948e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=0/1 total_cov=85/106 RA 1271 . NC_000913 2025451 0 T C consensus_score=821.1 frequency=1 major_base=C major_cov=110/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/122 RA 1272 . NC_000913 2027745 1 . C bias_e_value=1656260 bias_p_value=0.357014 consensus_score=571.1 fisher_strand_p_value=0.111916 frequency=1 ks_quality_p_value=1 major_base=C major_cov=86/78 major_frequency=9.820e-01 minor_base=. minor_cov=0/3 new_cov=86/78 polymorphism_frequency=9.820e-01 polymorphism_score=1.9 prediction=consensus ref_cov=0/3 total_cov=86/81 RA 1273 . NC_000913 2037671 1 . C consensus_score=436.9 frequency=1 major_base=C major_cov=71/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=71/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=71/56 RA 1274 . NC_000913 2043272 0 A G consensus_score=751.5 frequency=1 major_base=G major_cov=97/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=97/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=97/119 RA 1275 . NC_000913 2049323 0 A G consensus_score=879.6 frequency=1 major_base=G major_cov=114/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/133 RA 1276 . NC_000913 2069211 0 T C consensus_score=862.5 frequency=1 major_base=C major_cov=94/150 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=94/150 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=94/150 RA 1277 . NC_000913 2072030 0 T A consensus_score=862.2 frequency=1 major_base=A major_cov=108/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=108/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=108/115 RA 1278 . NC_000913 2086377 0 T C consensus_score=728.5 frequency=1 major_base=C major_cov=109/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/98 RA 1279 . NC_000913 2086449 0 T C consensus_score=654.3 frequency=1 major_base=C major_cov=95/95 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=95/95 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=95/95 RA 1280 . NC_000913 2094891 0 T C consensus_score=667.8 frequency=1 major_base=C major_cov=113/82 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=113/82 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=113/82 RA 1281 . NC_000913 2116149 0 A G bias_e_value=3406780 bias_p_value=0.734343 consensus_score=771.0 fisher_strand_p_value=0.399123 frequency=1 ks_quality_p_value=0.91818 major_base=G major_cov=90/137 major_frequency=9.956e-01 minor_base=A minor_cov=1/0 new_cov=90/137 polymorphism_frequency=9.956e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=1/0 total_cov=91/137 RA 1282 . NC_000913 2132238 0 A G consensus_score=722.1 frequency=1 major_base=G major_cov=93/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=93/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=93/116 RA 1283 . NC_000913 2147941 0 A G bias_e_value=3879140 bias_p_value=0.836162 consensus_score=707.6 fisher_strand_p_value=0.485294 frequency=1 ks_quality_p_value=1 major_base=G major_cov=105/98 major_frequency=9.951e-01 minor_base=T minor_cov=0/1 new_cov=105/98 polymorphism_frequency=9.951e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/99 RA 1284 . NC_000913 2152344 0 T C consensus_score=815.4 frequency=1 major_base=C major_cov=120/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=120/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/110 RA 1285 . NC_000913 2152717 0 T C consensus_score=788.0 frequency=1 major_base=C major_cov=111/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/115 RA 1286 . NC_000913 2154032 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=897.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999881 major_base=C major_cov=133/126 major_frequency=9.962e-01 minor_base=T minor_cov=1/0 new_cov=133/126 polymorphism_frequency=9.962e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=134/126 RA 1287 . NC_000913 2156641 0 T C consensus_score=841.2 frequency=1 major_base=C major_cov=97/138 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=97/138 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=97/138 RA 1288 . NC_000913 2161324 0 G A bias_e_value=3642940 bias_p_value=0.785248 consensus_score=870.6 fisher_strand_p_value=0.421053 frequency=1 ks_quality_p_value=0.999961 major_base=A major_cov=95/132 major_frequency=9.956e-01 minor_base=C minor_cov=1/0 new_cov=95/132 polymorphism_frequency=9.956e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=96/132 RA 1289 . NC_000913 2191374 0 A G consensus_score=961.4 frequency=1 major_base=G major_cov=127/148 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/148 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/148 RA 1290 . NC_000913 2202498 0 T . consensus_score=642.6 frequency=1 major_base=. major_cov=83/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=83/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=83/53 RA 1291 . NC_000913 2205190 0 T C bias_e_value=54342.2 bias_p_value=0.0117136 consensus_score=648.8 fisher_strand_p_value=0.00157103 frequency=1 ks_quality_p_value=1 major_base=C major_cov=89/116 major_frequency=9.624e-01 minor_base=A minor_cov=8/0 new_cov=89/116 polymorphism_frequency=9.624e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=97/116 RA 1292 . NC_000913 2210202 0 A G bias_e_value=4551490 bias_p_value=0.98109 consensus_score=843.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.811936 major_base=G major_cov=108/132 major_frequency=9.917e-01 minor_base=A minor_cov=1/1 new_cov=108/132 polymorphism_frequency=9.917e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=1/1 total_cov=109/133 RA 1293 . NC_000913 2216746 0 G C bias_e_value=4639220 bias_p_value=1 consensus_score=742.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999318 major_base=C major_cov=100/116 major_frequency=9.954e-01 minor_base=T minor_cov=0/1 new_cov=100/116 polymorphism_frequency=9.954e-01 polymorphism_score=-6.7 prediction=consensus ref_cov=0/0 total_cov=100/117 RA 1294 . NC_000913 2219147 0 T C bias_e_value=1962730 bias_p_value=0.423074 consensus_score=783.9 fisher_strand_p_value=0.434211 frequency=1 ks_quality_p_value=0.331649 major_base=C major_cov=98/129 major_frequency=9.956e-01 minor_base=T minor_cov=1/0 new_cov=98/129 polymorphism_frequency=9.956e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=99/129 RA 1295 . NC_000913 2223035 0 A G consensus_score=879.9 frequency=1 major_base=G major_cov=118/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=118/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=118/133 RA 1296 . NC_000913 2223218 0 T C consensus_score=696.5 frequency=1 major_base=C major_cov=110/91 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/91 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/91 RA 1297 . NC_000913 2234921 0 T C consensus_score=632.4 frequency=1 major_base=C major_cov=106/79 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=106/79 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=106/79 RA 1298 . NC_000913 2238265 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=847.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999864 major_base=C major_cov=126/116 major_frequency=9.959e-01 minor_base=T minor_cov=1/0 new_cov=126/116 polymorphism_frequency=9.959e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=127/116 RA 1299 . NC_000913 2239132 0 T C bias_e_value=4318540 bias_p_value=0.930876 consensus_score=909.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.65202 major_base=C major_cov=151/108 major_frequency=9.962e-01 minor_base=A minor_cov=1/0 new_cov=151/108 polymorphism_frequency=9.962e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=0/0 total_cov=152/108 RA 1300 . NC_000913 2252917 0 C T bias_e_value=3450690 bias_p_value=0.743809 consensus_score=754.1 fisher_strand_p_value=0.449495 frequency=1 ks_quality_p_value=0.836536 major_base=T major_cov=109/88 major_frequency=9.949e-01 minor_base=G minor_cov=0/1 new_cov=109/88 polymorphism_frequency=9.949e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=0/0 total_cov=110/89 RA 1301 . NC_000913 2258992 0 C T bias_e_value=3730270 bias_p_value=0.804073 consensus_score=880.4 fisher_strand_p_value=0.443478 frequency=1 ks_quality_p_value=1 major_base=T major_cov=128/101 major_frequency=9.957e-01 minor_base=C minor_cov=0/1 new_cov=128/101 polymorphism_frequency=9.957e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=128/102 RA 1302 . NC_000913 2264995 1 . G bias_e_value=3932900 bias_p_value=0.847749 consensus_score=767.2 fisher_strand_p_value=0.501868 frequency=1 ks_quality_p_value=0.999666 major_base=G major_cov=100/118 major_frequency=9.909e-01 minor_base=. minor_cov=0/2 new_cov=100/118 polymorphism_frequency=9.909e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=0/2 total_cov=100/120 RA 1303 . NC_000913 2272980 0 T C consensus_score=789.2 frequency=1 major_base=C major_cov=103/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=103/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=103/125 RA 1304 . NC_000913 2275005 0 T C bias_e_value=3733800 bias_p_value=0.804833 consensus_score=817.1 fisher_strand_p_value=0.451477 frequency=1 ks_quality_p_value=0.984355 major_base=C major_cov=130/106 major_frequency=9.958e-01 minor_base=T minor_cov=0/1 new_cov=130/106 polymorphism_frequency=9.958e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=0/1 total_cov=130/107 RA 1305 . NC_000913 2281824 0 G A consensus_score=879.2 frequency=1 major_base=A major_cov=121/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=121/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=121/107 RA 1306 . NC_000913 2295407 0 C T bias_e_value=4639220 bias_p_value=1 consensus_score=876.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999121 major_base=T major_cov=112/126 major_frequency=9.958e-01 minor_base=G minor_cov=0/1 new_cov=112/126 polymorphism_frequency=9.958e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/127 RA 1307 . NC_000913 2315444 0 G C consensus_score=804.3 frequency=1 major_base=C major_cov=112/117 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/117 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/117 RA 1308 . NC_000913 2324980 1 . C bias_e_value=4639180 bias_p_value=0.999991 consensus_score=640.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.995787 major_base=C major_cov=90/97 major_frequency=9.842e-01 minor_base=. minor_cov=1/2 new_cov=90/97 polymorphism_frequency=9.842e-01 polymorphism_score=1.8 prediction=consensus ref_cov=1/2 total_cov=91/99 RA 1309 . NC_000913 2327579 0 T C consensus_score=797.4 frequency=1 major_base=C major_cov=103/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=103/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=103/125 RA 1310 . NC_000913 2343040 0 T C consensus_score=843.5 frequency=1 major_base=C major_cov=122/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=122/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=122/119 RA 1311 . NC_000913 2359592 0 T C consensus_score=727.7 frequency=1 major_base=C major_cov=119/91 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=119/91 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=119/91 RA 1312 . NC_000913 2381736 0 C . consensus_score=559.6 frequency=1 major_base=. major_cov=67/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=67/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=67/52 RA 1313 . NC_000913 2414329 0 C T bias_e_value=2557500 bias_p_value=0.551277 consensus_score=778.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.218793 major_base=T major_cov=113/93 major_frequency=9.952e-01 minor_base=C minor_cov=1/0 new_cov=113/93 polymorphism_frequency=9.952e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=1/0 total_cov=114/93 RA 1314 . NC_000913 2417173 0 A G consensus_score=878.6 frequency=1 major_base=G major_cov=125/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/125 RA 1315 . NC_000913 2429483 0 T C consensus_score=742.5 frequency=1 major_base=C major_cov=102/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=102/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/112 RA 1316 . NC_000913 2438697 0 A C bias_e_value=3817260 bias_p_value=0.822824 consensus_score=683.2 fisher_strand_p_value=0.467337 frequency=1 ks_quality_p_value=0.999949 major_base=C major_cov=92/106 major_frequency=9.950e-01 minor_base=T minor_cov=1/0 new_cov=92/106 polymorphism_frequency=9.950e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=93/106 RA 1317 . NC_000913 2441613 0 T C consensus_score=860.2 frequency=1 major_base=C major_cov=125/118 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/118 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/118 RA 1318 . NC_000913 2453196 0 A G consensus_score=731.0 frequency=1 major_base=G major_cov=92/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/114 RA 1319 . NC_000913 2486394 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=838.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=102/135 major_frequency=9.958e-01 minor_base=A minor_cov=0/1 new_cov=102/135 polymorphism_frequency=9.958e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/136 RA 1320 . NC_000913 2486986 0 T C consensus_score=587.0 frequency=1 major_base=C major_cov=104/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/61 RA 1321 . NC_000913 2490400 0 T C consensus_score=809.1 frequency=1 major_base=C major_cov=103/128 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=103/128 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=103/128 RA 1322 . NC_000913 2497463 0 T C consensus_score=841.1 frequency=1 major_base=C major_cov=116/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/125 RA 1323 . NC_000913 2501010 0 A T consensus_score=842.1 frequency=1 major_base=T major_cov=129/99 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=129/99 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=129/99 RA 1324 . NC_000913 2506868 0 A G consensus_score=651.8 frequency=1 major_base=G major_cov=92/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/101 RA 1325 . NC_000913 2509139 0 A G bias_e_value=583572 bias_p_value=0.125791 consensus_score=824.7 fisher_strand_p_value=0.49789 frequency=1 ks_quality_p_value=0.0549359 major_base=G major_cov=117/118 major_frequency=9.916e-01 minor_base=A minor_cov=2/0 new_cov=117/118 polymorphism_frequency=9.916e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=2/0 total_cov=119/118 RA 1326 . NC_000913 2524466 0 A G consensus_score=931.8 frequency=1 major_base=G major_cov=126/137 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=126/137 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/137 RA 1327 . NC_000913 2530921 0 A G consensus_score=777.1 frequency=1 major_base=G major_cov=127/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/94 RA 1328 . NC_000913 2551460 0 T C consensus_score=764.8 frequency=1 major_base=C major_cov=104/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/120 RA 1329 . NC_000913 2571889 0 C T bias_e_value=3629580 bias_p_value=0.782367 consensus_score=862.8 fisher_strand_p_value=0.417722 frequency=1 ks_quality_p_value=1 major_base=T major_cov=138/98 major_frequency=9.958e-01 minor_base=C minor_cov=0/1 new_cov=138/98 polymorphism_frequency=9.958e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=138/99 RA 1330 . NC_000913 2578097 0 A G consensus_score=881.2 frequency=1 major_base=G major_cov=123/127 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=123/127 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/127 RA 1331 . NC_000913 2594634 0 T C consensus_score=743.0 frequency=1 major_base=C major_cov=119/91 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=119/91 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=119/91 RA 1332 . NC_000913 2595348 0 A G consensus_score=536.6 frequency=1 major_base=G major_cov=61/92 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/92 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/92 RA 1333 . NC_000913 2609667 0 C T consensus_score=828.9 frequency=1 major_base=T major_cov=98/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=98/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/126 RA 1334 . NC_000913 2612448 0 C T consensus_score=829.6 frequency=1 major_base=T major_cov=112/102 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/102 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/102 RA 1335 . NC_000913 2616953 0 T C consensus_score=896.3 frequency=1 major_base=C major_cov=116/142 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/142 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/142 RA 1336 . NC_000913 2621256 0 G A consensus_score=836.1 frequency=1 major_base=A major_cov=119/92 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=119/92 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=119/92 RA 1337 . NC_000913 2637648 0 T C bias_e_value=4639070 bias_p_value=0.999968 consensus_score=719.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.992028 major_base=C major_cov=111/94 major_frequency=9.951e-01 minor_base=T minor_cov=1/0 new_cov=111/94 polymorphism_frequency=9.951e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=1/0 total_cov=112/94 RA 1338 . NC_000913 2649287 1 . C bias_e_value=4639180 bias_p_value=0.99999 consensus_score=674.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.995638 major_base=C major_cov=85/107 major_frequency=9.948e-01 minor_base=A minor_cov=0/1 new_cov=85/107 polymorphism_frequency=9.948e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=0/1 total_cov=85/109 RA 1339 . NC_000913 2654241 0 A G consensus_score=792.9 frequency=1 major_base=G major_cov=94/135 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=94/135 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=94/135 RA 1340 . NC_000913 2659764 0 C T consensus_score=897.4 frequency=1 major_base=T major_cov=116/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/113 RA 1341 . NC_000913 2670111 0 G A consensus_score=766.4 frequency=1 major_base=A major_cov=100/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=100/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=100/98 RA 1342 . NC_000913 2672460 0 G A consensus_score=911.7 frequency=1 major_base=A major_cov=128/104 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=128/104 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/104 RA 1343 . NC_000913 2683080 0 T C consensus_score=806.3 frequency=1 major_base=C major_cov=115/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=115/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/115 RA 1344 . NC_000913 2686480 0 T C bias_e_value=3631930 bias_p_value=0.782876 consensus_score=774.5 fisher_strand_p_value=0.418919 frequency=1 ks_quality_p_value=0.998534 major_base=C major_cov=92/129 major_frequency=9.955e-01 minor_base=T minor_cov=1/0 new_cov=92/129 polymorphism_frequency=9.955e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=1/0 total_cov=93/130 RA 1345 . NC_000913 2686792 0 A G consensus_score=791.2 frequency=1 major_base=G major_cov=121/108 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=121/108 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=121/108 RA 1346 . NC_000913 2691024 0 A T consensus_score=1152.4 frequency=1 major_base=T major_cov=122/172 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=122/172 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=122/172 RA 1347 . NC_000913 2701551 0 T C bias_e_value=2769100 bias_p_value=0.596889 consensus_score=669.5 fisher_strand_p_value=0.401042 frequency=1 ks_quality_p_value=0.623944 major_base=C major_cov=76/115 major_frequency=9.948e-01 minor_base=T minor_cov=1/0 new_cov=76/115 polymorphism_frequency=9.948e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=1/0 total_cov=77/115 RA 1348 . NC_000913 2711990 0 C T consensus_score=723.5 frequency=1 major_base=T major_cov=64/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=64/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/122 RA 1349 . NC_000913 2716362 0 T C bias_e_value=4502320 bias_p_value=0.97049 consensus_score=695.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.767111 major_base=C major_cov=116/84 major_frequency=9.950e-01 minor_base=T minor_cov=1/0 new_cov=116/84 polymorphism_frequency=9.950e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=117/84 RA 1350 . NC_000913 2719936 0 A G bias_e_value=4355810 bias_p_value=0.93891 consensus_score=839.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.671477 major_base=G major_cov=113/133 major_frequency=9.960e-01 minor_base=A minor_cov=0/1 new_cov=113/133 polymorphism_frequency=9.960e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=113/134 RA 1351 . NC_000913 2722348 0 G A consensus_score=769.5 frequency=1 major_base=A major_cov=110/88 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/88 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/88 RA 1352 . NC_000913 2729371 1 . C consensus_score=441.2 frequency=1 major_base=C major_cov=53/79 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/79 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/79 RA 1353 . NC_000913 2744399 0 T C consensus_score=715.0 frequency=1 major_base=C major_cov=97/111 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=97/111 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=97/111 RA 1354 . NC_000913 2747388 0 C . bias_e_value=4625260 bias_p_value=0.996991 consensus_score=1079.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.923436 major_base=. major_cov=121/109 major_frequency=9.957e-01 minor_base=C minor_cov=1/0 new_cov=121/109 polymorphism_frequency=9.957e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=1/0 total_cov=122/109 RA 1355 . NC_000913 2751091 0 G C consensus_score=707.7 frequency=1 major_base=C major_cov=91/111 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/111 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/111 RA 1356 . NC_000913 2763367 0 G A consensus_score=1009.9 frequency=1 major_base=A major_cov=123/129 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=123/129 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/129 RA 1357 . NC_000913 2765459 1 . C bias_e_value=3912.38 bias_p_value=0.000843327 consensus_reject=FREQUENCY_CUTOFF consensus_score=265.6 fisher_strand_p_value=8.12493e-05 frequency=7.364e-01 ks_quality_p_value=0.995914 major_base=C major_cov=19/62 major_frequency=7.364e-01 minor_base=. minor_cov=19/10 new_cov=19/62 polymorphism_frequency=7.364e-01 polymorphism_score=98.2 prediction=polymorphism ref_cov=19/10 total_cov=38/72 RA 1358 . NC_000913 2766382 0 C G consensus_score=767.1 frequency=1 major_base=G major_cov=114/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/116 RA 1359 . NC_000913 2766423 0 G A consensus_score=794.0 frequency=1 major_base=A major_cov=103/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=103/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=103/116 RA 1360 . NC_000913 2766427 0 T A consensus_score=740.1 frequency=1 major_base=A major_cov=91/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/115 RA 1361 . NC_000913 2766428 0 G C consensus_score=682.6 frequency=1 major_base=C major_cov=90/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=90/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=90/115 RA 1362 . NC_000913 2766473 0 A G consensus_score=642.0 frequency=1 major_base=G major_cov=76/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=76/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=76/109 RA 1363 . NC_000913 2766475 0 A G bias_e_value=3601320 bias_p_value=0.776277 consensus_score=631.4 fisher_strand_p_value=0.410811 frequency=1 ks_quality_p_value=1 major_base=G major_cov=75/109 major_frequency=9.946e-01 minor_base=A minor_cov=1/0 new_cov=75/109 polymorphism_frequency=9.946e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=76/109 RA 1364 . NC_000913 2781019 1 . G consensus_score=705.2 frequency=1 major_base=G major_cov=101/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=101/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=101/112 RA 1365 . NC_000913 2781027 0 C G consensus_score=747.8 frequency=1 major_base=G major_cov=112/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/115 RA 1366 . NC_000913 2785180 0 T . consensus_score=887.3 frequency=1 major_base=. major_cov=89/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=89/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=89/98 RA 1367 . NC_000913 2796560 0 T C bias_e_value=4592080 bias_p_value=0.989839 consensus_score=489.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.860873 major_base=C major_cov=62/80 major_frequency=9.930e-01 minor_base=T minor_cov=0/1 new_cov=62/80 polymorphism_frequency=9.930e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=62/81 RA 1368 . NC_000913 2796565 0 T C bias_e_value=4597060 bias_p_value=0.990912 consensus_score=524.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.868246 major_base=C major_cov=60/90 major_frequency=9.934e-01 minor_base=T minor_cov=0/1 new_cov=60/90 polymorphism_frequency=9.934e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=61/91 RA 1369 . NC_000913 2805526 0 A G consensus_score=694.5 frequency=1 major_base=G major_cov=100/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=100/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=100/101 RA 1370 . NC_000913 2812858 0 C . bias_e_value=4059510 bias_p_value=0.875041 consensus_score=792.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.543755 major_base=. major_cov=103/65 major_frequency=9.941e-01 minor_base=T minor_cov=1/0 new_cov=103/65 polymorphism_frequency=9.941e-01 polymorphism_score=-2.3 prediction=consensus ref_cov=0/0 total_cov=104/65 RA 1371 . NC_000913 2819446 0 G C consensus_score=731.8 frequency=1 major_base=C major_cov=127/92 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/92 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/92 RA 1372 . NC_000913 2820143 0 G . bias_e_value=4639220 bias_p_value=1 consensus_score=981.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=125/84 major_frequency=9.952e-01 minor_base=T minor_cov=1/0 new_cov=125/84 polymorphism_frequency=9.952e-01 polymorphism_score=-2.8 prediction=consensus ref_cov=0/0 total_cov=126/84 RA 1373 . NC_000913 2823915 0 A G consensus_score=689.1 frequency=1 major_base=G major_cov=95/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=95/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=95/101 RA 1374 . NC_000913 2824797 0 T C consensus_score=924.3 frequency=1 major_base=C major_cov=149/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=149/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=149/114 RA 1375 . NC_000913 2825102 0 T C consensus_score=930.3 frequency=1 major_base=C major_cov=116/150 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/150 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/150 RA 1376 . NC_000913 2830091 0 T C bias_e_value=4634780 bias_p_value=0.999044 consensus_score=927.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.956583 major_base=C major_cov=134/134 major_frequency=9.963e-01 minor_base=T minor_cov=1/0 new_cov=134/134 polymorphism_frequency=9.963e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=135/134 RA 1377 . NC_000913 2838043 1 . G consensus_score=819.5 frequency=1 major_base=G major_cov=112/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/119 RA 1378 . NC_000913 2838055 0 G . consensus_score=1171.3 frequency=1 major_base=. major_cov=116/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/133 RA 1379 . NC_000913 2842033 0 G T consensus_score=944.3 frequency=1 major_base=T major_cov=128/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=128/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/112 RA 1380 . NC_000913 2847927 0 A G consensus_score=904.0 frequency=1 major_base=G major_cov=148/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=148/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=148/107 RA 1381 . NC_000913 2854119 0 C T consensus_score=954.8 frequency=1 major_base=T major_cov=148/99 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=148/99 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=148/99 RA 1382 . NC_000913 2865091 0 T C bias_e_value=3870600 bias_p_value=0.834322 consensus_score=902.2 fisher_strand_p_value=0.482759 frequency=1 ks_quality_p_value=1 major_base=C major_cov=125/135 major_frequency=9.962e-01 minor_base=A minor_cov=1/0 new_cov=125/135 polymorphism_frequency=9.962e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/135 RA 1383 . NC_000913 2866286 0 T C consensus_score=848.6 frequency=1 major_base=C major_cov=128/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=128/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/116 RA 1384 . NC_000913 2871779 0 A G consensus_score=903.1 frequency=1 major_base=G major_cov=136/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=136/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=136/125 RA 1385 . NC_000913 2872811 0 T C bias_e_value=3840530 bias_p_value=0.82784 consensus_score=865.4 fisher_strand_p_value=0.474104 frequency=1 ks_quality_p_value=0.999713 major_base=C major_cov=118/132 major_frequency=9.960e-01 minor_base=T minor_cov=1/0 new_cov=118/132 polymorphism_frequency=9.960e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=119/132 RA 1386 . NC_000913 2877536 0 G C consensus_score=881.8 frequency=1 major_base=C major_cov=135/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=135/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=135/113 RA 1387 . NC_000913 2888375 0 A G consensus_score=876.5 frequency=1 major_base=G major_cov=127/123 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/123 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/123 RA 1388 . NC_000913 2896818 1 . C bias_e_value=4639220 bias_p_value=1 consensus_score=895.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=149/106 major_frequency=9.922e-01 minor_base=. minor_cov=1/1 new_cov=149/106 polymorphism_frequency=9.922e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=1/1 total_cov=150/107 RA 1389 . NC_000913 2917193 0 A G consensus_score=817.8 frequency=1 major_base=G major_cov=110/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/125 RA 1390 . NC_000913 2923170 0 T C consensus_score=850.2 frequency=1 major_base=C major_cov=124/118 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/118 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/118 RA 1391 . NC_000913 2923951 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=833.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=130/107 major_frequency=9.958e-01 minor_base=T minor_cov=1/0 new_cov=130/107 polymorphism_frequency=9.958e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=131/107 RA 1392 . NC_000913 2926421 0 T C consensus_score=921.2 frequency=1 major_base=C major_cov=125/134 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/134 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/134 RA 1393 . NC_000913 2929074 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=946.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999166 major_base=G major_cov=124/152 major_frequency=9.928e-01 minor_base=A minor_cov=1/1 new_cov=124/152 polymorphism_frequency=9.928e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/1 total_cov=125/153 RA 1394 . NC_000913 2932019 0 T C consensus_score=607.2 frequency=1 major_base=C major_cov=89/82 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=89/82 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=89/82 RA 1395 . NC_000913 2956046 0 A C consensus_score=823.9 frequency=1 major_base=C major_cov=104/131 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/131 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/131 RA 1396 . NC_000913 2961511 0 C T bias_e_value=3960030 bias_p_value=0.853598 consensus_score=1032.5 fisher_strand_p_value=0.510285 frequency=1 ks_quality_p_value=1 major_base=T major_cov=114/154 major_frequency=9.926e-01 minor_base=G minor_cov=0/2 new_cov=114/154 polymorphism_frequency=9.926e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=114/157 RA 1397 . NC_000913 2963770 0 T C bias_e_value=2374120 bias_p_value=0.51175 consensus_score=507.3 fisher_strand_p_value=0.4 frequency=1 ks_quality_p_value=0.484406 major_base=C major_cov=59/90 major_frequency=9.933e-01 minor_base=T minor_cov=1/0 new_cov=59/90 polymorphism_frequency=9.933e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=60/90 RA 1398 . NC_000913 2967341 0 T C consensus_score=754.0 frequency=1 major_base=C major_cov=134/79 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=134/79 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=134/79 RA 1399 . NC_000913 2968005 0 T A consensus_score=910.0 frequency=1 major_base=A major_cov=125/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/109 RA 1400 . NC_000913 2971643 0 A G bias_e_value=3705060 bias_p_value=0.798639 consensus_score=870.4 fisher_strand_p_value=0.448 frequency=1 ks_quality_p_value=0.975126 major_base=G major_cov=138/111 major_frequency=9.960e-01 minor_base=A minor_cov=0/1 new_cov=138/111 polymorphism_frequency=9.960e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/1 total_cov=138/112 RA 1401 . NC_000913 2977174 0 G A bias_e_value=3903510 bias_p_value=0.841415 consensus_score=1071.3 fisher_strand_p_value=0.492754 frequency=1 ks_quality_p_value=0.999763 major_base=A major_cov=140/135 major_frequency=9.964e-01 minor_base=G minor_cov=0/1 new_cov=140/135 polymorphism_frequency=9.964e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=140/137 RA 1402 . NC_000913 2996557 0 T C consensus_score=795.5 frequency=1 major_base=C major_cov=108/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=108/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=108/119 RA 1403 . NC_000913 3005398 1 . C bias_e_value=3911090 bias_p_value=0.843049 consensus_score=713.8 fisher_strand_p_value=0.49505 frequency=1 ks_quality_p_value=0.999803 major_base=C major_cov=102/99 major_frequency=9.950e-01 minor_base=. minor_cov=0/1 new_cov=102/99 polymorphism_frequency=9.950e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=0/1 total_cov=102/100 RA 1404 . NC_000913 3007730 0 T C consensus_score=857.5 frequency=1 major_base=C major_cov=124/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/120 RA 1405 . NC_000913 3011468 0 G A consensus_score=1048.3 frequency=1 major_base=A major_cov=118/150 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=118/150 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=118/150 RA 1406 . NC_000913 3012261 0 A G consensus_score=773.1 frequency=1 major_base=G major_cov=92/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/126 RA 1407 . NC_000913 3013656 0 T C bias_e_value=3092680 bias_p_value=0.666639 consensus_score=692.7 fisher_strand_p_value=0.304569 frequency=1 ks_quality_p_value=0.999948 major_base=C major_cov=59/137 major_frequency=9.949e-01 minor_base=G minor_cov=1/0 new_cov=59/137 polymorphism_frequency=9.949e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=0/0 total_cov=60/137 RA 1408 . NC_000913 3014968 0 G A consensus_score=1090.0 frequency=1 major_base=A major_cov=154/128 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=154/128 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=154/128 RA 1409 . NC_000913 3025675 1 . C bias_e_value=4638970 bias_p_value=0.999947 consensus_score=736.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.989702 major_base=C major_cov=118/90 major_frequency=9.952e-01 minor_base=. minor_cov=1/0 new_cov=118/90 polymorphism_frequency=9.952e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/0 total_cov=119/90 RA 1410 . NC_000913 3034436 0 T C consensus_score=758.6 frequency=1 major_base=C major_cov=99/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=99/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=99/120 RA 1411 . NC_000913 3075215 1 . T bias_e_value=2458340 bias_p_value=0.529904 consensus_score=694.8 fisher_strand_p_value=0.205675 frequency=1 ks_quality_p_value=0.996813 major_base=T major_cov=97/79 major_frequency=9.888e-01 minor_base=. minor_cov=0/2 new_cov=97/79 polymorphism_frequency=9.888e-01 polymorphism_score=-0.7 prediction=consensus ref_cov=0/2 total_cov=97/81 RA 1412 . NC_000913 3077340 0 T C bias_e_value=4480500 bias_p_value=0.965787 consensus_score=456.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.75009 major_base=C major_cov=38/96 major_frequency=9.926e-01 minor_base=T minor_cov=0/1 new_cov=38/96 polymorphism_frequency=9.926e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=38/97 RA 1413 . NC_000913 3077513 0 C . consensus_score=620.0 frequency=1 major_base=. major_cov=81/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=81/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=81/50 RA 1414 . NC_000913 3077640 1 . G consensus_score=466.7 frequency=1 major_base=G major_cov=107/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=107/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/27 RA 1415 . NC_000913 3077905 0 A G consensus_score=910.8 frequency=1 major_base=G major_cov=116/143 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/143 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/143 RA 1416 . NC_000913 3078245 0 C G bias_e_value=4639220 bias_p_value=1 consensus_score=746.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=105/123 major_frequency=9.956e-01 minor_base=T minor_cov=0/1 new_cov=105/123 polymorphism_frequency=9.956e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/124 RA 1417 . NC_000913 3079965 0 G A consensus_score=1012.0 frequency=1 major_base=A major_cov=124/132 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/132 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/132 RA 1418 . NC_000913 3082631 0 C T bias_e_value=2692410 bias_p_value=0.580357 consensus_score=1054.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.238496 major_base=T major_cov=145/125 major_frequency=9.963e-01 minor_base=C minor_cov=1/0 new_cov=145/125 polymorphism_frequency=9.963e-01 polymorphism_score=-5.3 prediction=consensus ref_cov=1/0 total_cov=146/125 RA 1419 . NC_000913 3092718 0 C . bias_e_value=3848130 bias_p_value=0.829478 consensus_score=984.7 fisher_strand_p_value=0.47619 frequency=1 ks_quality_p_value=0.999954 major_base=. major_cov=99/110 major_frequency=9.952e-01 minor_base=A minor_cov=1/0 new_cov=99/110 polymorphism_frequency=9.952e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=0/0 total_cov=100/110 RA 1420 . NC_000913 3093299 1 . G bias_e_value=3938080 bias_p_value=0.848866 consensus_score=794.7 fisher_strand_p_value=0.503362 frequency=1 ks_quality_p_value=0.999922 major_base=G major_cov=102/124 major_frequency=9.912e-01 minor_base=. minor_cov=0/2 new_cov=102/124 polymorphism_frequency=9.912e-01 polymorphism_score=-1.5 prediction=consensus ref_cov=0/2 total_cov=102/126 RA 1421 . NC_000913 3099656 1 . A bias_e_value=4490070 bias_p_value=0.967851 consensus_score=994.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.757388 major_base=A major_cov=118/131 major_frequency=9.960e-01 minor_base=. minor_cov=0/1 new_cov=118/131 polymorphism_frequency=9.960e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=0/1 total_cov=118/132 RA 1422 . NC_000913 3101362 0 T A bias_e_value=3311470 bias_p_value=0.713799 consensus_score=939.0 fisher_strand_p_value=0.445833 frequency=1 ks_quality_p_value=0.777309 major_base=A major_cov=106/133 major_frequency=9.958e-01 minor_base=T minor_cov=1/0 new_cov=106/133 polymorphism_frequency=9.958e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/0 total_cov=107/133 RA 1423 . NC_000913 3106997 0 C T consensus_score=913.8 frequency=1 major_base=T major_cov=120/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=120/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/113 RA 1424 . NC_000913 3107469 1 . C consensus_score=776.5 frequency=1 major_base=C major_cov=109/117 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/117 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/117 RA 1425 . NC_000913 3108438 0 C A bias_e_value=3646660 bias_p_value=0.786051 consensus_score=652.1 fisher_strand_p_value=0.421965 frequency=1 ks_quality_p_value=1 major_base=A major_cov=72/100 major_frequency=9.942e-01 minor_base=T minor_cov=1/0 new_cov=72/100 polymorphism_frequency=9.942e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=73/100 RA 1426 . NC_000913 3115115 1 . C bias_e_value=4001200 bias_p_value=0.862473 consensus_score=913.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.523738 major_base=C major_cov=117/141 major_frequency=9.961e-01 minor_base=. minor_cov=0/1 new_cov=117/141 polymorphism_frequency=9.961e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=0/1 total_cov=117/142 RA 1427 . NC_000913 3116492 0 C T consensus_score=1105.1 frequency=1 major_base=T major_cov=147/134 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=147/134 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=147/134 RA 1428 . NC_000913 3123582 1 . G consensus_score=680.3 frequency=1 major_base=G major_cov=99/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=99/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=99/98 RA 1429 . NC_000913 3130334 0 A G consensus_score=815.7 frequency=1 major_base=G major_cov=117/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=117/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/116 RA 1430 . NC_000913 3132550 0 T C bias_e_value=4627160 bias_p_value=0.9974 consensus_score=747.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.928767 major_base=C major_cov=119/99 major_frequency=9.954e-01 minor_base=T minor_cov=1/0 new_cov=119/99 polymorphism_frequency=9.954e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=1/0 total_cov=120/99 RA 1431 . NC_000913 3142620 0 T C bias_e_value=3865760 bias_p_value=0.833278 consensus_score=844.7 fisher_strand_p_value=0.481328 frequency=1 ks_quality_p_value=1 major_base=C major_cov=125/115 major_frequency=9.959e-01 minor_base=A minor_cov=0/1 new_cov=125/115 polymorphism_frequency=9.959e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/116 RA 1432 . NC_000913 3150581 0 T C bias_e_value=3780860 bias_p_value=0.814976 consensus_score=899.4 fisher_strand_p_value=0.457364 frequency=1 ks_quality_p_value=0.999518 major_base=C major_cov=140/117 major_frequency=9.961e-01 minor_base=T minor_cov=0/1 new_cov=140/117 polymorphism_frequency=9.961e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=140/118 RA 1433 . NC_000913 3151557 0 C T bias_e_value=3725020 bias_p_value=0.802941 consensus_score=938.6 fisher_strand_p_value=0.442149 frequency=1 ks_quality_p_value=0.999863 major_base=T major_cov=106/135 major_frequency=9.959e-01 minor_base=A minor_cov=1/0 new_cov=106/135 polymorphism_frequency=9.959e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/135 RA 1434 . NC_000913 3152244 1 . C consensus_score=658.3 frequency=1 major_base=C major_cov=104/82 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/82 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/82 RA 1435 . NC_000913 3158201 1 . C bias_e_value=3716970 bias_p_value=0.801205 consensus_score=906.4 fisher_strand_p_value=0.517571 frequency=1 ks_quality_p_value=0.850063 major_base=C major_cov=106/156 major_frequency=9.924e-01 minor_base=. minor_cov=0/2 new_cov=106/156 polymorphism_frequency=9.924e-01 polymorphism_score=-1.3 prediction=consensus ref_cov=0/2 total_cov=107/158 RA 1436 . NC_000913 3158281 0 C T bias_e_value=2509780 bias_p_value=0.540991 consensus_score=1030.8 fisher_strand_p_value=0.232993 frequency=1 ks_quality_p_value=0.910295 major_base=T major_cov=131/142 major_frequency=9.927e-01 minor_base=C minor_cov=2/0 new_cov=131/142 polymorphism_frequency=9.927e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=2/0 total_cov=134/142 RA 1437 . NC_000913 3166935 0 G C consensus_score=953.4 frequency=1 major_base=C major_cov=126/147 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=126/147 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/147 RA 1438 . NC_000913 3166936 0 C G consensus_score=952.4 frequency=1 major_base=G major_cov=125/147 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/147 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/147 RA 1439 . NC_000913 3167940 0 G A bias_e_value=4631100 bias_p_value=0.998249 consensus_score=969.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.941417 major_base=A major_cov=130/117 major_frequency=9.960e-01 minor_base=G minor_cov=1/0 new_cov=130/117 polymorphism_frequency=9.960e-01 polymorphism_score=-5.4 prediction=consensus ref_cov=1/0 total_cov=131/117 RA 1440 . NC_000913 3185776 0 T C consensus_score=797.9 frequency=1 major_base=C major_cov=121/104 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=121/104 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=121/104 RA 1441 . NC_000913 3185807 0 T C consensus_score=996.1 frequency=1 major_base=C major_cov=164/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=164/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=164/114 RA 1442 . NC_000913 3186925 0 A G consensus_score=847.9 frequency=1 major_base=G major_cov=132/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=132/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=132/107 RA 1443 . NC_000913 3192609 0 A G bias_e_value=2860700 bias_p_value=0.616633 consensus_reject=FREQUENCY_CUTOFF consensus_score=28.4 fisher_strand_p_value=0.487229 frequency=5.355e-01 ks_quality_p_value=0.543437 major_base=G major_cov=120/99 major_frequency=5.355e-01 minor_base=A minor_cov=97/93 new_cov=120/99 polymorphism_frequency=5.355e-01 polymorphism_score=inf prediction=polymorphism ref_cov=97/93 total_cov=217/193 RA 1444 . NC_000913 3192619 0 A C bias_e_value=4614740 bias_p_value=0.994723 consensus_reject=FREQUENCY_CUTOFF consensus_score=316.0 fisher_strand_p_value=0.923413 frequency=5.374e-01 ks_quality_p_value=0.973606 major_base=C major_cov=135/102 major_frequency=5.374e-01 minor_base=A minor_cov=115/89 new_cov=135/102 polymorphism_frequency=5.374e-01 polymorphism_score=inf prediction=polymorphism ref_cov=115/89 total_cov=250/191 RA 1445 . NC_000913 3192625 0 T A bias_e_value=4385430 bias_p_value=0.945295 consensus_reject=FREQUENCY_CUTOFF consensus_score=157.9 fisher_strand_p_value=0.919614 frequency=5.417e-01 ks_quality_p_value=0.748158 major_base=A major_cov=129/92 major_frequency=5.417e-01 minor_base=T minor_cov=111/76 new_cov=129/92 polymorphism_frequency=5.417e-01 polymorphism_score=inf prediction=polymorphism ref_cov=111/76 total_cov=241/168 RA 1446 . NC_000913 3192626 0 T C bias_e_value=2793950 bias_p_value=0.602245 consensus_reject=FREQUENCY_CUTOFF consensus_score=37.8 fisher_strand_p_value=0.840468 frequency=5.403e-01 ks_quality_p_value=0.30235 major_base=C major_cov=129/92 major_frequency=5.403e-01 minor_base=T minor_cov=112/76 new_cov=129/92 polymorphism_frequency=5.403e-01 polymorphism_score=inf prediction=polymorphism ref_cov=112/76 total_cov=241/168 RA 1447 . NC_000913 3192635 0 A G bias_e_value=3850700 bias_p_value=0.830031 consensus_reject=FREQUENCY_CUTOFF consensus_score=15.0 fisher_strand_p_value=0.480349 frequency=5.328e-01 ks_quality_p_value=0.99285 major_base=G major_cov=135/84 major_frequency=5.328e-01 minor_base=A minor_cov=111/81 new_cov=135/84 polymorphism_frequency=5.328e-01 polymorphism_score=inf prediction=polymorphism ref_cov=111/81 total_cov=247/165 RA 1448 . NC_000913 3192647 0 G C bias_e_value=312480 bias_p_value=0.0673561 consensus_reject=FREQUENCY_CUTOFF consensus_score=25.6 fisher_strand_p_value=0.536359 frequency=5.104e-01 ks_quality_p_value=0.0233397 major_base=C major_cov=116/80 major_frequency=5.104e-01 minor_base=G minor_cov=105/83 new_cov=116/80 polymorphism_frequency=5.104e-01 polymorphism_score=inf prediction=polymorphism ref_cov=105/83 total_cov=221/163 RA 1449 . NC_000913 3192665 0 C T bias_e_value=3430520 bias_p_value=0.73946 consensus_reject=FREQUENCY_CUTOFF consensus_score=32.9 fisher_strand_p_value=0.392643 frequency=4.916e-01 ks_quality_p_value=0.946404 major_base=C major_cov=101/81 major_frequency=5.084e-01 minor_base=T minor_cov=106/70 new_cov=106/70 polymorphism_frequency=4.916e-01 polymorphism_score=inf prediction=polymorphism ref_cov=101/81 total_cov=208/151 RA 1450 . NC_000913 3192669 0 A C bias_e_value=4139390 bias_p_value=0.89226 consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF consensus_score=-0.9 fisher_strand_p_value=0.589369 frequency=4.631e-01 ks_quality_p_value=0.972756 major_base=A major_cov=105/84 major_frequency=5.369e-01 minor_base=C minor_cov=96/67 new_cov=96/67 polymorphism_frequency=4.631e-01 polymorphism_score=inf prediction=polymorphism ref_cov=105/84 total_cov=201/151 RA 1451 . NC_000913 3192672 0 A T bias_e_value=2755440 bias_p_value=0.593944 consensus_reject=FREQUENCY_CUTOFF consensus_score=150.9 fisher_strand_p_value=0.509189 frequency=4.500e-01 ks_quality_p_value=0.487262 major_base=A major_cov=104/83 major_frequency=5.500e-01 minor_base=T minor_cov=91/62 new_cov=91/62 polymorphism_frequency=4.500e-01 polymorphism_score=inf prediction=polymorphism ref_cov=104/83 total_cov=195/145 RA 1452 . NC_000913 3192674 0 A G bias_e_value=3448660 bias_p_value=0.74337 consensus_reject=FREQUENCY_CUTOFF consensus_score=188.5 fisher_strand_p_value=0.509193 frequency=4.471e-01 ks_quality_p_value=0.73758 major_base=A major_cov=104/84 major_frequency=5.529e-01 minor_base=G minor_cov=90/62 new_cov=90/62 polymorphism_frequency=4.471e-01 polymorphism_score=inf prediction=polymorphism ref_cov=104/84 total_cov=194/146 RA 1453 . NC_000913 3192687 0 T C bias_e_value=274707 bias_p_value=0.0592139 consensus_reject=FREQUENCY_CUTOFF consensus_score=251.0 fisher_strand_p_value=0.494249 frequency=4.180e-01 ks_quality_p_value=0.0216323 major_base=T major_cov=105/83 major_frequency=5.820e-01 minor_base=C minor_cov=81/54 new_cov=81/54 polymorphism_frequency=4.180e-01 polymorphism_score=inf prediction=polymorphism ref_cov=105/83 total_cov=186/137 RA 1454 . NC_000913 3192694 0 T C bias_e_value=3831310 bias_p_value=0.825851 consensus_reject=FREQUENCY_CUTOFF consensus_score=247.2 fisher_strand_p_value=0.50592 frequency=4.394e-01 ks_quality_p_value=0.9316 major_base=T major_cov=99/86 major_frequency=5.606e-01 minor_base=C minor_cov=83/62 new_cov=83/62 polymorphism_frequency=4.394e-01 polymorphism_score=inf prediction=polymorphism ref_cov=99/86 total_cov=182/148 RA 1455 . NC_000913 3192716 0 A . bias_e_value=2855120 bias_p_value=0.615431 consensus_reject=FREQUENCY_CUTOFF consensus_score=698.4 fisher_strand_p_value=0.311916 frequency=4.379e-01 ks_quality_p_value=0.845982 major_base=A major_cov=92/89 major_frequency=5.621e-01 minor_base=. minor_cov=63/78 new_cov=63/78 polymorphism_frequency=4.379e-01 polymorphism_score=inf prediction=polymorphism ref_cov=92/89 total_cov=155/167 RA 1456 . NC_000913 3192718 0 T G bias_e_value=200311 bias_p_value=0.0431778 consensus_reject=FREQUENCY_CUTOFF consensus_score=271.6 fisher_strand_p_value=0.373002 frequency=4.343e-01 ks_quality_p_value=0.0195506 major_base=T major_cov=93/92 major_frequency=5.657e-01 minor_base=G minor_cov=64/78 new_cov=64/78 polymorphism_frequency=4.343e-01 polymorphism_score=inf prediction=polymorphism ref_cov=93/92 total_cov=157/170 RA 1457 . NC_000913 3192724 0 G A bias_e_value=1820780 bias_p_value=0.392476 consensus_reject=FREQUENCY_CUTOFF consensus_score=176.3 fisher_strand_p_value=0.138 frequency=4.545e-01 ks_quality_p_value=0.932273 major_base=G major_cov=89/79 major_frequency=5.455e-01 minor_base=A minor_cov=62/78 new_cov=62/78 polymorphism_frequency=4.545e-01 polymorphism_score=inf prediction=polymorphism ref_cov=89/79 total_cov=151/157 RA 1458 . NC_000913 3192757 0 G . bias_e_value=4359840 bias_p_value=0.939779 consensus_reject=FREQUENCY_CUTOFF consensus_score=648.1 fisher_strand_p_value=0.746587 frequency=4.682e-01 ks_quality_p_value=0.902331 major_base=G major_cov=94/90 major_frequency=5.318e-01 minor_base=. minor_cov=79/83 new_cov=79/83 polymorphism_frequency=4.682e-01 polymorphism_score=inf prediction=polymorphism ref_cov=94/90 total_cov=173/173 RA 1459 . NC_000913 3192766 0 A G bias_e_value=2416190 bias_p_value=0.520819 consensus_reject=FREQUENCY_CUTOFF consensus_score=507.9 fisher_strand_p_value=0.918679 frequency=4.148e-01 ks_quality_p_value=0.216982 major_base=A major_cov=113/117 major_frequency=5.852e-01 minor_base=G minor_cov=79/84 new_cov=79/84 polymorphism_frequency=4.148e-01 polymorphism_score=inf prediction=polymorphism ref_cov=113/117 total_cov=192/201 RA 1460 . NC_000913 3192767 0 C T bias_e_value=1383500 bias_p_value=0.298219 consensus_reject=FREQUENCY_CUTOFF consensus_score=420.1 fisher_strand_p_value=0.838133 frequency=4.162e-01 ks_quality_p_value=0.103206 major_base=C major_cov=114/116 major_frequency=5.838e-01 minor_base=T minor_cov=79/85 new_cov=79/85 polymorphism_frequency=4.162e-01 polymorphism_score=inf prediction=polymorphism ref_cov=114/116 total_cov=193/201 RA 1461 . NC_000913 3192769 0 G T bias_e_value=197514 bias_p_value=0.0425748 consensus_reject=FREQUENCY_CUTOFF consensus_score=760.0 fisher_strand_p_value=0.919249 frequency=4.035e-01 ks_quality_p_value=0.00779994 major_base=G major_cov=119/122 major_frequency=5.965e-01 minor_base=T minor_cov=79/84 new_cov=79/84 polymorphism_frequency=4.035e-01 polymorphism_score=inf prediction=polymorphism ref_cov=119/122 total_cov=198/206 RA 1462 . NC_000913 3192806 0 A G bias_e_value=2846040 bias_p_value=0.613474 consensus_reject=FREQUENCY_CUTOFF consensus_score=503.8 fisher_strand_p_value=0.446207 frequency=4.216e-01 ks_quality_p_value=0.58809 major_base=A major_cov=132/130 major_frequency=5.784e-01 minor_base=G minor_cov=104/87 new_cov=104/87 polymorphism_frequency=4.216e-01 polymorphism_score=inf prediction=polymorphism ref_cov=132/130 total_cov=236/217 RA 1463 . NC_000913 3192820 0 C G bias_e_value=2523720 bias_p_value=0.543997 consensus_reject=FREQUENCY_CUTOFF consensus_score=477.5 fisher_strand_p_value=0.92015 frequency=4.053e-01 ks_quality_p_value=0.23261 major_base=C major_cov=132/113 major_frequency=5.947e-01 minor_base=G minor_cov=89/78 new_cov=89/78 polymorphism_frequency=4.053e-01 polymorphism_score=inf prediction=polymorphism ref_cov=132/113 total_cov=222/191 RA 1464 . NC_000913 3192821 0 G T bias_e_value=4639080 bias_p_value=0.999969 consensus_reject=FREQUENCY_CUTOFF consensus_score=627.4 fisher_strand_p_value=1 frequency=4.068e-01 ks_quality_p_value=0.992139 major_base=G major_cov=132/113 major_frequency=5.932e-01 minor_base=T minor_cov=90/78 new_cov=90/78 polymorphism_frequency=4.068e-01 polymorphism_score=inf prediction=polymorphism ref_cov=132/113 total_cov=222/191 RA 1465 . NC_000913 3192830 0 G C bias_e_value=4606900 bias_p_value=0.993033 consensus_reject=FREQUENCY_CUTOFF consensus_score=427.7 fisher_strand_p_value=0.918856 frequency=4.070e-01 ks_quality_p_value=0.962398 major_base=G major_cov=124/112 major_frequency=5.930e-01 minor_base=C minor_cov=84/78 new_cov=84/78 polymorphism_frequency=4.070e-01 polymorphism_score=inf prediction=polymorphism ref_cov=124/112 total_cov=209/192 RA 1466 . NC_000913 3192832 0 A G bias_e_value=4344850 bias_p_value=0.936547 consensus_reject=FREQUENCY_CUTOFF consensus_score=416.2 fisher_strand_p_value=1 frequency=4.035e-01 ks_quality_p_value=0.665609 major_base=A major_cov=124/114 major_frequency=5.965e-01 minor_base=G minor_cov=84/77 new_cov=84/77 polymorphism_frequency=4.035e-01 polymorphism_score=inf prediction=polymorphism ref_cov=124/114 total_cov=208/194 RA 1467 . NC_000913 3192833 0 G A bias_e_value=4576020 bias_p_value=0.986376 consensus_reject=FREQUENCY_CUTOFF consensus_score=313.9 fisher_strand_p_value=0.83954 frequency=4.000e-01 ks_quality_p_value=1 major_base=G major_cov=123/120 major_frequency=6.000e-01 minor_base=A minor_cov=84/78 new_cov=84/78 polymorphism_frequency=4.000e-01 polymorphism_score=inf prediction=polymorphism ref_cov=123/120 total_cov=207/198 RA 1468 . NC_000913 3192838 0 T C bias_e_value=690355 bias_p_value=0.148808 consensus_reject=FREQUENCY_CUTOFF consensus_score=411.7 fisher_strand_p_value=1 frequency=4.152e-01 ks_quality_p_value=0.033953 major_base=T major_cov=119/119 major_frequency=5.848e-01 minor_base=C minor_cov=84/85 new_cov=84/85 polymorphism_frequency=4.152e-01 polymorphism_score=inf prediction=polymorphism ref_cov=119/119 total_cov=203/204 RA 1469 . NC_000913 3192844 0 G A bias_e_value=4623800 bias_p_value=0.996676 consensus_reject=FREQUENCY_CUTOFF consensus_score=354.7 fisher_strand_p_value=0.919579 frequency=3.883e-01 ks_quality_p_value=1 major_base=G major_cov=128/124 major_frequency=6.117e-01 minor_base=A minor_cov=80/80 new_cov=80/80 polymorphism_frequency=3.883e-01 polymorphism_score=inf prediction=polymorphism ref_cov=128/124 total_cov=208/205 RA 1470 . NC_000913 3192846 0 C T bias_e_value=926673 bias_p_value=0.199748 consensus_reject=FREQUENCY_CUTOFF consensus_score=314.0 fisher_strand_p_value=1 frequency=3.946e-01 ks_quality_p_value=0.0499869 major_base=C major_cov=123/124 major_frequency=6.054e-01 minor_base=T minor_cov=80/81 new_cov=80/81 polymorphism_frequency=3.946e-01 polymorphism_score=inf prediction=polymorphism ref_cov=123/124 total_cov=203/205 RA 1471 . NC_000913 3192847 0 A C bias_e_value=4400520 bias_p_value=0.948548 consensus_reject=FREQUENCY_CUTOFF consensus_score=335.5 fisher_strand_p_value=0.83922 frequency=3.975e-01 ks_quality_p_value=0.830375 major_base=A major_cov=118/126 major_frequency=6.025e-01 minor_base=C minor_cov=80/81 new_cov=80/81 polymorphism_frequency=3.975e-01 polymorphism_score=inf prediction=polymorphism ref_cov=118/126 total_cov=198/207 RA 1472 . NC_000913 3192873 0 T C bias_e_value=438546 bias_p_value=0.0945301 consensus_reject=FREQUENCY_CUTOFF consensus_score=56.7 fisher_strand_p_value=0.317677 frequency=4.963e-01 ks_quality_p_value=0.0599896 major_base=T major_cov=89/113 major_frequency=5.037e-01 minor_base=C minor_cov=98/101 new_cov=98/101 polymorphism_frequency=4.963e-01 polymorphism_score=inf prediction=polymorphism ref_cov=89/113 total_cov=188/215 RA 1473 . NC_000913 3192891 0 C T bias_e_value=667844 bias_p_value=0.143956 consensus_reject=FREQUENCY_CUTOFF consensus_score=74.0 fisher_strand_p_value=0.0325314 frequency=5.013e-01 ks_quality_p_value=0.999881 major_base=T major_cov=96/101 major_frequency=5.013e-01 minor_base=C minor_cov=74/122 new_cov=96/101 polymorphism_frequency=5.013e-01 polymorphism_score=inf prediction=polymorphism ref_cov=74/122 total_cov=170/223 RA 1474 . NC_000913 3192905 0 C A bias_e_value=328777 bias_p_value=0.0708689 consensus_reject=FREQUENCY_CUTOFF consensus_score=261.4 fisher_strand_p_value=0.0240762 frequency=4.680e-01 ks_quality_p_value=0.5535 major_base=C major_cov=77/131 major_frequency=5.320e-01 minor_base=A minor_cov=89/94 new_cov=89/94 polymorphism_frequency=4.680e-01 polymorphism_score=inf prediction=polymorphism ref_cov=77/131 total_cov=167/225 RA 1475 . NC_000913 3192907 0 A T bias_e_value=320010 bias_p_value=0.0689793 consensus_reject=FREQUENCY_CUTOFF consensus_score=73.3 fisher_strand_p_value=0.015557 frequency=4.788e-01 ks_quality_p_value=0.828582 major_base=A major_cov=78/131 major_frequency=5.212e-01 minor_base=T minor_cov=95/97 new_cov=95/97 polymorphism_frequency=4.788e-01 polymorphism_score=inf prediction=polymorphism ref_cov=78/131 total_cov=173/228 RA 1476 . NC_000913 3194124 0 C T consensus_score=769.0 frequency=1 major_base=T major_cov=104/93 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/93 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/93 RA 1477 . NC_000913 3195844 0 A G consensus_score=667.1 frequency=1 major_base=G major_cov=98/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=98/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/94 RA 1478 . NC_000913 3206609 0 C T bias_e_value=3579230 bias_p_value=0.771516 consensus_score=818.6 fisher_strand_p_value=0.40566 frequency=1 ks_quality_p_value=0.999598 major_base=T major_cov=85/126 major_frequency=9.953e-01 minor_base=C minor_cov=1/0 new_cov=85/126 polymorphism_frequency=9.953e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=86/126 RA 1479 . NC_000913 3206988 0 A G bias_e_value=1684600 bias_p_value=0.36312 consensus_score=710.3 fisher_strand_p_value=0.195431 frequency=1 ks_quality_p_value=0.587015 major_base=G major_cov=92/118 major_frequency=9.906e-01 minor_base=A minor_cov=2/0 new_cov=92/118 polymorphism_frequency=9.906e-01 polymorphism_score=-3.1 prediction=consensus ref_cov=2/0 total_cov=94/118 RA 1480 . NC_000913 3208504 0 T C bias_e_value=1374770 bias_p_value=0.296336 consensus_score=957.8 fisher_strand_p_value=0.405109 frequency=1 ks_quality_p_value=0.211628 major_base=C major_cov=163/110 major_frequency=9.964e-01 minor_base=T minor_cov=0/1 new_cov=163/110 polymorphism_frequency=9.964e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=163/111 RA 1481 . NC_000913 3215930 0 T C consensus_score=841.4 frequency=1 major_base=C major_cov=120/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=120/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/120 RA 1482 . NC_000913 3221097 0 C G bias_e_value=4639220 bias_p_value=1 consensus_score=859.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=121/122 major_frequency=9.959e-01 minor_base=C minor_cov=0/1 new_cov=121/122 polymorphism_frequency=9.959e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=121/123 RA 1483 . NC_000913 3221098 0 G C bias_e_value=4601180 bias_p_value=0.991799 consensus_score=849.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.874695 major_base=C major_cov=121/122 major_frequency=9.959e-01 minor_base=A minor_cov=0/1 new_cov=121/122 polymorphism_frequency=9.959e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=0/0 total_cov=121/123 RA 1484 . NC_000913 3221392 0 T C bias_e_value=4546520 bias_p_value=0.980019 consensus_score=918.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.806872 major_base=C major_cov=137/134 major_frequency=9.927e-01 minor_base=T minor_cov=1/1 new_cov=137/134 polymorphism_frequency=9.927e-01 polymorphism_score=-3.1 prediction=consensus ref_cov=1/1 total_cov=138/135 RA 1485 . NC_000913 3222061 0 A G bias_e_value=1710620 bias_p_value=0.368729 consensus_score=848.2 fisher_strand_p_value=0.434426 frequency=1 ks_quality_p_value=0.270068 major_base=G major_cov=138/105 major_frequency=9.959e-01 minor_base=A minor_cov=0/1 new_cov=138/105 polymorphism_frequency=9.959e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=138/106 RA 1486 . NC_000913 3222944 0 C A consensus_score=725.2 frequency=1 major_base=A major_cov=86/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=86/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=86/101 RA 1487 . NC_000913 3222945 0 A G consensus_score=648.6 frequency=1 major_base=G major_cov=86/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=86/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=86/101 RA 1488 . NC_000913 3222946 0 A C consensus_score=640.9 frequency=1 major_base=C major_cov=86/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=86/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=86/101 RA 1489 . NC_000913 3222947 0 G A bias_e_value=3929010 bias_p_value=0.846912 consensus_score=688.1 fisher_strand_p_value=0.500546 frequency=1 ks_quality_p_value=0.999884 major_base=A major_cov=86/99 major_frequency=9.893e-01 minor_base=C minor_cov=0/2 new_cov=86/99 polymorphism_frequency=9.893e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=86/101 RA 1490 . NC_000913 3224878 0 G . consensus_score=1067.7 frequency=1 major_base=. major_cov=116/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/110 RA 1491 . NC_000913 3224924 1 . C bias_e_value=4639210 bias_p_value=0.999997 consensus_score=695.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997491 major_base=C major_cov=103/94 major_frequency=9.949e-01 minor_base=A minor_cov=1/0 new_cov=103/94 polymorphism_frequency=9.949e-01 polymorphism_score=-5.4 prediction=consensus ref_cov=0/0 total_cov=104/94 RA 1492 . NC_000913 3225194 0 C T bias_e_value=2804350 bias_p_value=0.604486 consensus_score=633.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.255755 major_base=T major_cov=74/89 major_frequency=9.939e-01 minor_base=C minor_cov=0/1 new_cov=74/89 polymorphism_frequency=9.939e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=0/1 total_cov=74/90 RA 1493 . NC_000913 3236176 0 G . consensus_score=1246.1 frequency=1 major_base=. major_cov=125/140 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/140 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/140 RA 1494 . NC_000913 3236734 1 . C consensus_score=829.5 frequency=1 major_base=C major_cov=131/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=131/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/109 RA 1495 . NC_000913 3236757 0 T . bias_e_value=4639220 bias_p_value=1 consensus_score=1235.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999741 major_base=. major_cov=132/131 major_frequency=9.962e-01 minor_base=T minor_cov=0/1 new_cov=132/131 polymorphism_frequency=9.962e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=0/1 total_cov=132/132 RA 1496 . NC_000913 3237240 1 . C consensus_score=407.6 frequency=1 major_base=C major_cov=84/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=84/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/36 RA 1497 . NC_000913 3237245 1 . C bias_e_value=4633490 bias_p_value=0.998764 consensus_score=404.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.950697 major_base=C major_cov=83/36 major_frequency=9.917e-01 minor_base=. minor_cov=1/0 new_cov=83/36 polymorphism_frequency=9.917e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=1/0 total_cov=84/36 RA 1498 . NC_000913 3237790 0 T C bias_e_value=4639150 bias_p_value=0.999984 consensus_score=928.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.994327 major_base=C major_cov=131/131 major_frequency=9.962e-01 minor_base=A minor_cov=1/0 new_cov=131/131 polymorphism_frequency=9.962e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=0/0 total_cov=132/131 RA 1499 . NC_000913 3240123 0 T C consensus_score=795.5 frequency=1 major_base=C major_cov=132/96 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=132/96 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=132/96 RA 1500 . NC_000913 3242993 0 A G consensus_score=855.1 frequency=1 major_base=G major_cov=126/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=126/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/120 RA 1501 . NC_000913 3250165 0 C T bias_e_value=3319310 bias_p_value=0.715489 consensus_score=516.7 fisher_strand_p_value=0.348148 frequency=1 ks_quality_p_value=1 major_base=T major_cov=46/88 major_frequency=9.926e-01 minor_base=G minor_cov=1/0 new_cov=46/88 polymorphism_frequency=9.926e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/88 RA 1502 . NC_000913 3253741 0 G . bias_e_value=4624770 bias_p_value=0.996886 consensus_score=1043.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.922122 major_base=. major_cov=129/94 major_frequency=9.955e-01 minor_base=G minor_cov=1/0 new_cov=129/94 polymorphism_frequency=9.955e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=1/0 total_cov=130/94 RA 1503 . NC_000913 3255425 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=728.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999955 major_base=C major_cov=114/96 major_frequency=9.953e-01 minor_base=G minor_cov=1/0 new_cov=114/96 polymorphism_frequency=9.953e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/96 RA 1504 . NC_000913 3255593 0 G . consensus_score=984.5 frequency=1 major_base=. major_cov=94/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=94/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=94/116 RA 1505 . NC_000913 3255615 0 G . consensus_score=945.7 frequency=1 major_base=. major_cov=75/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=75/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=75/125 RA 1506 . NC_000913 3256891 1 . C bias_e_value=3868030 bias_p_value=0.833766 consensus_score=854.6 fisher_strand_p_value=0.487805 frequency=1 ks_quality_p_value=0.988092 major_base=C major_cov=126/119 major_frequency=9.959e-01 minor_base=. minor_cov=0/1 new_cov=126/119 polymorphism_frequency=9.959e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/1 total_cov=126/120 RA 1507 . NC_000913 3257837 1 . G consensus_score=820.2 frequency=1 major_base=G major_cov=121/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=121/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=121/113 RA 1508 . NC_000913 3269236 0 G C consensus_score=684.6 frequency=1 major_base=C major_cov=99/97 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=99/97 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=99/97 RA 1509 . NC_000913 3278453 0 T C bias_e_value=3421480 bias_p_value=0.737511 consensus_score=883.8 fisher_strand_p_value=0.381323 frequency=1 ks_quality_p_value=0.969351 major_base=C major_cov=159/97 major_frequency=9.961e-01 minor_base=T minor_cov=0/1 new_cov=159/97 polymorphism_frequency=9.961e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/1 total_cov=159/98 RA 1510 . NC_000913 3279197 0 A C consensus_score=871.3 frequency=1 major_base=C major_cov=114/137 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/137 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/137 RA 1511 . NC_000913 3291253 0 T C consensus_score=733.2 frequency=1 major_base=C major_cov=101/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=101/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=101/109 RA 1512 . NC_000913 3297859 0 T G bias_e_value=6.19636e-06 bias_p_value=1.33565e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=469.3 fisher_strand_p_value=4.2e-14 frequency=2.083e-01 ks_quality_p_value=1 major_base=T major_cov=60/92 major_frequency=7.917e-01 minor_base=G minor_cov=40/0 new_cov=40/0 polymorphism_frequency=2.083e-01 polymorphism_score=14.3 prediction=polymorphism ref_cov=60/92 total_cov=101/92 RA 1513 . NC_000913 3302447 1 . C bias_e_value=4639210 bias_p_value=0.999998 consensus_score=720.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997815 major_base=C major_cov=116/92 major_frequency=9.858e-01 minor_base=. minor_cov=2/1 new_cov=116/92 polymorphism_frequency=9.858e-01 polymorphism_score=1.2 prediction=consensus ref_cov=2/1 total_cov=119/93 RA 1514 . NC_000913 3304497 0 A G consensus_score=969.9 frequency=1 major_base=G major_cov=132/152 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=132/152 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=132/152 RA 1515 . NC_000913 3310176 0 A G bias_e_value=4632490 bias_p_value=0.998549 consensus_score=835.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.94661 major_base=G major_cov=127/114 major_frequency=9.959e-01 minor_base=A minor_cov=1/0 new_cov=127/114 polymorphism_frequency=9.959e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=1/0 total_cov=128/114 RA 1516 . NC_000913 3310422 0 T C bias_e_value=1779720 bias_p_value=0.383626 consensus_score=944.6 fisher_strand_p_value=0.429091 frequency=1 ks_quality_p_value=0.289853 major_base=C major_cov=157/117 major_frequency=9.964e-01 minor_base=T minor_cov=0/1 new_cov=157/117 polymorphism_frequency=9.964e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=159/118 RA 1517 . NC_000913 3312106 0 T C consensus_score=972.0 frequency=1 major_base=C major_cov=111/167 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/167 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/167 RA 1518 . NC_000913 3319717 0 A G bias_e_value=4638620 bias_p_value=0.99987 consensus_score=914.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.983915 major_base=G major_cov=141/125 major_frequency=9.925e-01 minor_base=A minor_cov=1/1 new_cov=141/125 polymorphism_frequency=9.925e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=1/1 total_cov=142/126 RA 1519 . NC_000913 3345093 0 A G bias_e_value=3891480 bias_p_value=0.838823 consensus_score=847.1 fisher_strand_p_value=0.489796 frequency=1 ks_quality_p_value=0.998362 major_base=G major_cov=125/119 major_frequency=9.959e-01 minor_base=A minor_cov=0/1 new_cov=125/119 polymorphism_frequency=9.959e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=125/121 RA 1520 . NC_000913 3352254 0 C G consensus_score=803.0 frequency=1 major_base=G major_cov=144/84 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=144/84 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=144/84 RA 1521 . NC_000913 3352255 0 G C consensus_score=803.5 frequency=1 major_base=C major_cov=144/84 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=144/84 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=144/84 RA 1522 . NC_000913 3358623 0 A G consensus_score=25.8 frequency=1 major_base=G major_cov=5/4 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=5/4 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=5/4 RA 1523 . NC_000913 3362543 0 T C bias_e_value=2464420 bias_p_value=0.531214 consensus_score=813.6 fisher_strand_p_value=0.478261 frequency=1 ks_quality_p_value=0.430408 major_base=C major_cov=120/109 major_frequency=9.957e-01 minor_base=T minor_cov=0/1 new_cov=120/109 polymorphism_frequency=9.957e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=120/110 RA 1524 . NC_000913 3362606 0 A G bias_e_value=3533220 bias_p_value=0.761597 consensus_score=856.7 fisher_strand_p_value=0.483871 frequency=1 ks_quality_p_value=0.815652 major_base=G major_cov=119/128 major_frequency=9.960e-01 minor_base=A minor_cov=1/0 new_cov=119/128 polymorphism_frequency=9.960e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=120/128 RA 1525 . NC_000913 3371573 0 A G bias_e_value=3702810 bias_p_value=0.798154 consensus_score=876.8 fisher_strand_p_value=0.459144 frequency=1 ks_quality_p_value=0.950183 major_base=G major_cov=117/139 major_frequency=9.961e-01 minor_base=A minor_cov=1/0 new_cov=117/139 polymorphism_frequency=9.961e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=1/0 total_cov=118/139 RA 1526 . NC_000913 3387694 0 A C bias_e_value=5.42401e-13 bias_p_value=1.16916e-19 consensus_reject=FREQUENCY_CUTOFF consensus_score=559.0 fisher_strand_p_value=2.41195e-21 frequency=2.074e-01 ks_quality_p_value=1 major_base=A major_cov=126/46 major_frequency=7.926e-01 minor_base=C minor_cov=0/45 new_cov=0/45 polymorphism_frequency=2.074e-01 polymorphism_score=16.8 prediction=polymorphism ref_cov=126/46 total_cov=126/92 RA 1527 . NC_000913 3389811 0 C . consensus_score=402.0 frequency=1 major_base=. major_cov=48/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/66 RA 1528 . NC_000913 3389896 0 C T bias_e_value=813849 bias_p_value=0.175428 consensus_reject=FREQUENCY_CUTOFF consensus_score=490.3 fisher_strand_p_value=0.158586 frequency=3.947e-01 ks_quality_p_value=0.265406 major_base=C major_cov=116/134 major_frequency=6.053e-01 minor_base=T minor_cov=88/75 new_cov=88/75 polymorphism_frequency=3.947e-01 polymorphism_score=inf prediction=polymorphism ref_cov=116/134 total_cov=204/210 RA 1529 . NC_000913 3393103 0 T . bias_e_value=3874080 bias_p_value=0.835071 consensus_score=1016.4 fisher_strand_p_value=0.483871 frequency=1 ks_quality_p_value=0.999829 major_base=. major_cov=104/112 major_frequency=9.954e-01 minor_base=A minor_cov=1/0 new_cov=104/112 polymorphism_frequency=9.954e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=0/0 total_cov=105/112 RA 1530 . NC_000913 3405394 0 A G bias_e_value=3346310 bias_p_value=0.721308 consensus_score=745.8 fisher_strand_p_value=0.436937 frequency=1 ks_quality_p_value=0.809511 major_base=G major_cov=96/125 major_frequency=9.955e-01 minor_base=A minor_cov=1/0 new_cov=96/125 polymorphism_frequency=9.955e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=1/0 total_cov=97/125 RA 1531 . NC_000913 3406487 0 T C consensus_score=856.0 frequency=1 major_base=C major_cov=120/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=120/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/122 RA 1532 . NC_000913 3410599 0 A G bias_e_value=4361780 bias_p_value=0.940198 consensus_score=849.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.67473 major_base=G major_cov=137/106 major_frequency=9.959e-01 minor_base=A minor_cov=1/0 new_cov=137/106 polymorphism_frequency=9.959e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=1/0 total_cov=138/106 RA 1533 . NC_000913 3418837 1 . G bias_e_value=2770510 bias_p_value=0.597194 consensus_score=689.1 fisher_strand_p_value=0.250448 frequency=1 ks_quality_p_value=1 major_base=G major_cov=93/105 major_frequency=9.851e-01 minor_base=. minor_cov=0/3 new_cov=93/105 polymorphism_frequency=9.851e-01 polymorphism_score=1.5 prediction=consensus ref_cov=0/3 total_cov=93/108 RA 1534 . NC_000913 3421119 0 G . bias_e_value=1069810 bias_p_value=0.230602 consensus_score=183.5 fisher_strand_p_value=0.0639403 frequency=1 ks_quality_p_value=0.948388 major_base=. major_cov=28/45 major_frequency=9.605e-01 minor_base=G minor_cov=3/0 new_cov=28/45 polymorphism_frequency=9.605e-01 polymorphism_score=3.9 prediction=consensus ref_cov=3/0 total_cov=31/45 RA 1535 . NC_000913 3429526 0 C . consensus_score=1020.3 frequency=1 major_base=. major_cov=94/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=94/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=94/122 RA 1536 . NC_000913 3430453 1 . C bias_e_value=4639200 bias_p_value=0.999995 consensus_score=676.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.996724 major_base=C major_cov=113/84 major_frequency=9.949e-01 minor_base=A minor_cov=1/0 new_cov=113/84 polymorphism_frequency=9.949e-01 polymorphism_score=-5.8 prediction=consensus ref_cov=0/0 total_cov=114/84 RA 1537 . NC_000913 3432762 0 T C bias_e_value=3324530 bias_p_value=0.716614 consensus_score=859.7 fisher_strand_p_value=0.349398 frequency=1 ks_quality_p_value=0.999482 major_base=C major_cov=86/162 major_frequency=9.960e-01 minor_base=T minor_cov=1/0 new_cov=86/162 polymorphism_frequency=9.960e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=87/162 RA 1538 . NC_000913 3446406 0 G A consensus_score=1134.5 frequency=1 major_base=A major_cov=132/155 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=132/155 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=132/155 RA 1539 . NC_000913 3446647 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=838.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=132/107 major_frequency=9.958e-01 minor_base=T minor_cov=1/0 new_cov=132/107 polymorphism_frequency=9.958e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=133/107 RA 1540 . NC_000913 3446737 0 T C consensus_score=1069.3 frequency=1 major_base=C major_cov=138/174 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=138/174 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=138/174 RA 1541 . NC_000913 3455292 0 T C bias_e_value=1610390 bias_p_value=0.347126 consensus_score=779.0 fisher_strand_p_value=0.471111 frequency=1 ks_quality_p_value=0.228063 major_base=C major_cov=119/105 major_frequency=9.956e-01 minor_base=. minor_cov=0/1 new_cov=119/105 polymorphism_frequency=9.956e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=0/0 total_cov=119/106 RA 1542 . NC_000913 3458811 0 C T consensus_score=911.5 frequency=1 major_base=T major_cov=128/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=128/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/109 RA 1543 . NC_000913 3461794 0 C T bias_e_value=3824010 bias_p_value=0.824279 consensus_score=1018.2 fisher_strand_p_value=0.469231 frequency=1 ks_quality_p_value=1 major_base=T major_cov=121/138 major_frequency=9.962e-01 minor_base=G minor_cov=1/0 new_cov=121/138 polymorphism_frequency=9.962e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=122/138 RA 1544 . NC_000913 3464165 0 T C consensus_score=778.0 frequency=1 major_base=C major_cov=107/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=107/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/113 RA 1545 . NC_000913 3469235 0 A G bias_e_value=3863520 bias_p_value=0.832796 consensus_score=815.8 fisher_strand_p_value=0.480687 frequency=1 ks_quality_p_value=0.999963 major_base=G major_cov=121/111 major_frequency=9.957e-01 minor_base=T minor_cov=0/1 new_cov=121/111 polymorphism_frequency=9.957e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=121/112 RA 1546 . NC_000913 3471916 0 C T consensus_score=995.5 frequency=1 major_base=T major_cov=133/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=133/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=133/119 RA 1547 . NC_000913 3477397 0 T C consensus_score=904.4 frequency=1 major_base=C major_cov=127/131 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/131 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/131 RA 1548 . NC_000913 3483905 0 T C consensus_score=873.0 frequency=1 major_base=C major_cov=107/143 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=107/143 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/143 RA 1549 . NC_000913 3494555 0 T C consensus_score=776.1 frequency=1 major_base=C major_cov=43/179 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/179 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/179 RA 1550 . NC_000913 3500011 0 G A consensus_score=921.9 frequency=1 major_base=A major_cov=126/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=126/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/109 RA 1551 . NC_000913 3500308 0 C . bias_e_value=4636910 bias_p_value=0.999501 consensus_score=1073.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.96857 major_base=. major_cov=133/96 major_frequency=9.957e-01 minor_base=C minor_cov=1/0 new_cov=133/96 polymorphism_frequency=9.957e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=1/0 total_cov=134/96 RA 1552 . NC_000913 3506313 1 . C bias_e_value=4367440 bias_p_value=0.941417 consensus_score=754.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.677847 major_base=C major_cov=117/101 major_frequency=9.820e-01 minor_base=. minor_cov=2/2 new_cov=117/101 polymorphism_frequency=9.820e-01 polymorphism_score=4.1 prediction=consensus ref_cov=2/2 total_cov=119/103 RA 1553 . NC_000913 3509198 0 A G bias_e_value=4624580 bias_p_value=0.996844 consensus_score=834.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.921609 major_base=G major_cov=108/136 major_frequency=9.919e-01 minor_base=A minor_cov=1/1 new_cov=108/136 polymorphism_frequency=9.919e-01 polymorphism_score=-3.2 prediction=consensus ref_cov=1/1 total_cov=109/137 RA 1554 . NC_000913 3509956 0 T . consensus_score=1086.0 frequency=1 major_base=. major_cov=84/145 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=84/145 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=84/145 RA 1555 . NC_000913 3510120 1 . G bias_e_value=4349540 bias_p_value=0.937559 consensus_score=683.7 fisher_strand_p_value=0.671387 frequency=1 ks_quality_p_value=0.995113 major_base=G major_cov=124/71 major_frequency=9.701e-01 minor_base=. minor_cov=3/3 new_cov=124/71 polymorphism_frequency=9.701e-01 polymorphism_score=11.5 prediction=consensus ref_cov=3/3 total_cov=127/74 RA 1556 . NC_000913 3519337 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=941.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999972 major_base=C major_cov=124/144 major_frequency=9.963e-01 minor_base=A minor_cov=0/1 new_cov=124/144 polymorphism_frequency=9.963e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/145 RA 1557 . NC_000913 3522805 0 A G consensus_score=888.4 frequency=1 major_base=G major_cov=124/129 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/129 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/129 RA 1558 . NC_000913 3537404 1 . C bias_e_value=4619580 bias_p_value=0.995765 consensus_score=708.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.909394 major_base=C major_cov=94/112 major_frequency=9.952e-01 minor_base=. minor_cov=0/1 new_cov=94/112 polymorphism_frequency=9.952e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=0/1 total_cov=94/113 RA 1559 . NC_000913 3537404 2 . G bias_e_value=4611410 bias_p_value=0.994005 consensus_score=701.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.892516 major_base=G major_cov=93/112 major_frequency=9.951e-01 minor_base=. minor_cov=0/1 new_cov=93/112 polymorphism_frequency=9.951e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=0/1 total_cov=93/113 RA 1560 . NC_000913 3542788 0 A G consensus_score=825.0 frequency=1 major_base=G major_cov=125/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/113 RA 1561 . NC_000913 3544356 1 . G consensus_score=696.8 frequency=1 major_base=G major_cov=92/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/107 RA 1562 . NC_000913 3544358 1 . G bias_e_value=1769620 bias_p_value=0.381448 consensus_score=677.5 fisher_strand_p_value=0.456853 frequency=1 ks_quality_p_value=0.269958 major_base=G major_cov=89/107 major_frequency=9.949e-01 minor_base=. minor_cov=1/0 new_cov=89/107 polymorphism_frequency=9.949e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=1/0 total_cov=90/107 RA 1563 . NC_000913 3544363 1 . C consensus_score=679.4 frequency=1 major_base=C major_cov=90/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=90/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=90/107 RA 1564 . NC_000913 3548005 0 C T bias_e_value=4639220 bias_p_value=1 consensus_score=830.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=102/113 major_frequency=9.954e-01 minor_base=G minor_cov=0/1 new_cov=102/113 polymorphism_frequency=9.954e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/114 RA 1565 . NC_000913 3554088 1 . C consensus_score=632.4 frequency=1 major_base=C major_cov=108/80 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=108/80 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=108/80 RA 1566 . NC_000913 3554113 0 C . bias_e_value=3991210 bias_p_value=0.860319 consensus_score=785.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.520424 major_base=. major_cov=95/76 major_frequency=9.884e-01 minor_base=G minor_cov=1/1 new_cov=95/76 polymorphism_frequency=9.884e-01 polymorphism_score=-0.9 prediction=consensus ref_cov=0/0 total_cov=96/77 RA 1567 . NC_000913 3554117 1 . C bias_e_value=2410420 bias_p_value=0.519575 consensus_score=582.6 fisher_strand_p_value=0.201842 frequency=1 ks_quality_p_value=0.983772 major_base=C major_cov=95/76 major_frequency=9.884e-01 minor_base=. minor_cov=0/2 new_cov=95/76 polymorphism_frequency=9.884e-01 polymorphism_score=-1.2 prediction=consensus ref_cov=0/2 total_cov=96/78 RA 1568 . NC_000913 3558932 0 C G consensus_score=825.5 frequency=1 major_base=G major_cov=109/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/133 RA 1569 . NC_000913 3558933 0 G C consensus_score=821.6 frequency=1 major_base=C major_cov=109/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/133 RA 1570 . NC_000913 3570076 0 T C consensus_score=971.7 frequency=1 major_base=C major_cov=127/154 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/154 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/154 RA 1571 . NC_000913 3573700 1 . C bias_e_value=4639220 bias_p_value=1 consensus_score=707.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999264 major_base=C major_cov=104/104 major_frequency=9.952e-01 minor_base=A minor_cov=1/0 new_cov=104/104 polymorphism_frequency=9.952e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/104 RA 1572 . NC_000913 3575445 1 . G consensus_score=759.1 frequency=1 major_base=G major_cov=125/93 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/93 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/93 RA 1573 . NC_000913 3579035 0 T C consensus_score=806.1 frequency=1 major_base=C major_cov=94/134 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=94/134 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=94/134 RA 1574 . NC_000913 3580138 0 A G consensus_score=585.7 frequency=1 major_base=G major_cov=65/99 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=65/99 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=65/99 RA 1575 . NC_000913 3609245 0 T C consensus_score=847.4 frequency=1 major_base=C major_cov=107/134 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=107/134 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/134 RA 1576 . NC_000913 3610653 0 A G consensus_score=795.5 frequency=1 major_base=G major_cov=134/95 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=134/95 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=134/95 RA 1577 . NC_000913 3610686 0 A G consensus_score=915.6 frequency=1 major_base=G major_cov=134/131 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=134/131 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=134/131 RA 1578 . NC_000913 3620210 0 A C bias_e_value=3498780 bias_p_value=0.754174 consensus_reject=FREQUENCY_CUTOFF consensus_score=80.1 fisher_strand_p_value=0.386772 frequency=2.059e-01 ks_quality_p_value=1 major_base=A major_cov=18/9 major_frequency=7.941e-01 minor_base=C minor_cov=3/4 new_cov=3/4 polymorphism_frequency=2.059e-01 polymorphism_score=19.7 prediction=polymorphism ref_cov=18/9 total_cov=21/13 RA 1579 . NC_000913 3620355 0 A G bias_e_value=821560 bias_p_value=0.17709 consensus_reject=FREQUENCY_CUTOFF consensus_score=606.9 fisher_strand_p_value=0.0443505 frequency=3.315e-01 ks_quality_p_value=0.960878 major_base=A major_cov=109/133 major_frequency=6.685e-01 minor_base=G minor_cov=68/52 new_cov=68/52 polymorphism_frequency=3.315e-01 polymorphism_score=inf prediction=polymorphism ref_cov=109/133 total_cov=177/185 RA 1580 . NC_000913 3620359 0 A T bias_e_value=92230.5 bias_p_value=0.0198806 consensus_reject=FREQUENCY_CUTOFF consensus_score=638.1 fisher_strand_p_value=0.0434422 frequency=3.390e-01 ks_quality_p_value=0.0668962 major_base=A major_cov=106/126 major_frequency=6.610e-01 minor_base=T minor_cov=68/51 new_cov=68/51 polymorphism_frequency=3.390e-01 polymorphism_score=inf prediction=polymorphism ref_cov=106/126 total_cov=174/177 RA 1581 . NC_000913 3620374 0 G T bias_e_value=2786300 bias_p_value=0.600596 consensus_reject=FREQUENCY_CUTOFF consensus_score=941.3 fisher_strand_p_value=0.256784 frequency=2.295e-01 ks_quality_p_value=0.98493 major_base=G major_cov=131/141 major_frequency=7.705e-01 minor_base=T minor_cov=45/36 new_cov=45/36 polymorphism_frequency=2.295e-01 polymorphism_score=236.5 prediction=polymorphism ref_cov=131/141 total_cov=176/177 RA 1582 . NC_000913 3621612 0 T C consensus_score=542.8 frequency=1 major_base=C major_cov=111/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/52 RA 1583 . NC_000913 3623600 0 T C consensus_score=916.2 frequency=1 major_base=C major_cov=133/131 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=133/131 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=133/131 RA 1584 . NC_000913 3624949 0 C T consensus_score=964.0 frequency=1 major_base=T major_cov=116/129 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/129 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/129 RA 1585 . NC_000913 3627140 1 . G bias_e_value=4639220 bias_p_value=1 consensus_score=817.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999106 major_base=G major_cov=124/112 major_frequency=9.958e-01 minor_base=. minor_cov=1/0 new_cov=124/112 polymorphism_frequency=9.958e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/0 total_cov=125/112 RA 1586 . NC_000913 3629781 0 A G consensus_score=766.9 frequency=1 major_base=G major_cov=105/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=105/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/110 RA 1587 . NC_000913 3654259 0 T C consensus_score=714.1 frequency=1 major_base=C major_cov=98/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=98/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/109 RA 1588 . NC_000913 3661087 0 T C consensus_score=962.6 frequency=1 major_base=C major_cov=114/159 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/159 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/159 RA 1589 . NC_000913 3670236 0 T C consensus_score=894.8 frequency=1 major_base=C major_cov=111/142 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/142 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/142 RA 1590 . NC_000913 3675072 1 . G bias_e_value=3897870 bias_p_value=0.8402 consensus_score=785.1 fisher_strand_p_value=0.491228 frequency=1 ks_quality_p_value=0.999382 major_base=G major_cov=111/116 major_frequency=9.956e-01 minor_base=A minor_cov=1/0 new_cov=111/116 polymorphism_frequency=9.956e-01 polymorphism_score=-5.4 prediction=consensus ref_cov=0/1 total_cov=112/117 RA 1591 . NC_000913 3677270 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=866.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999968 major_base=C major_cov=117/131 major_frequency=9.960e-01 minor_base=G minor_cov=0/1 new_cov=117/131 polymorphism_frequency=9.960e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/132 RA 1592 . NC_000913 3682619 0 A G consensus_score=942.5 frequency=1 major_base=G major_cov=124/148 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/148 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/148 RA 1593 . NC_000913 3686775 1 . T consensus_score=1027.7 frequency=1 major_base=T major_cov=110/156 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/156 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/156 RA 1594 . NC_000913 3692572 0 C T bias_e_value=3799330 bias_p_value=0.818958 consensus_score=856.1 fisher_strand_p_value=0.462555 frequency=1 ks_quality_p_value=0.999376 major_base=T major_cov=104/122 major_frequency=9.956e-01 minor_base=C minor_cov=1/0 new_cov=104/122 polymorphism_frequency=9.956e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=105/122 RA 1595 . NC_000913 3703602 0 C G consensus_score=784.2 frequency=1 major_base=G major_cov=117/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=117/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/113 RA 1596 . NC_000913 3703603 0 G C consensus_score=794.8 frequency=1 major_base=C major_cov=117/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=117/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/113 RA 1597 . NC_000913 3714436 0 C G consensus_score=771.3 frequency=1 major_base=G major_cov=102/124 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=102/124 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/124 RA 1598 . NC_000913 3714437 0 G C consensus_score=764.3 frequency=1 major_base=C major_cov=102/124 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=102/124 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/124 RA 1599 . NC_000913 3718123 0 T C consensus_score=559.9 frequency=1 major_base=C major_cov=97/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=97/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=97/62 RA 1600 . NC_000913 3725739 1 . C bias_e_value=3683620 bias_p_value=0.794017 consensus_score=442.3 fisher_strand_p_value=0.431318 frequency=1 ks_quality_p_value=1 major_base=C major_cov=78/48 major_frequency=9.474e-01 minor_base=. minor_cov=3/4 new_cov=78/48 polymorphism_frequency=9.474e-01 polymorphism_score=14.6 prediction=consensus ref_cov=3/4 total_cov=81/52 RA 1601 . NC_000913 3732250 0 C T bias_e_value=3561740 bias_p_value=0.767745 consensus_score=1002.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.401343 major_base=T major_cov=130/130 major_frequency=9.962e-01 minor_base=C minor_cov=1/0 new_cov=130/130 polymorphism_frequency=9.962e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=1/0 total_cov=131/130 RA 1602 . NC_000913 3734264 0 C G bias_e_value=3819950 bias_p_value=0.823404 consensus_score=1169.4 fisher_strand_p_value=0.468085 frequency=1 ks_quality_p_value=0.999981 major_base=G major_cov=175/153 major_frequency=9.970e-01 minor_base=T minor_cov=0/1 new_cov=175/153 polymorphism_frequency=9.970e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=175/154 RA 1603 . NC_000913 3734265 0 G C bias_e_value=4639220 bias_p_value=1 consensus_score=1158.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999704 major_base=C major_cov=174/154 major_frequency=9.970e-01 minor_base=T minor_cov=1/0 new_cov=174/154 polymorphism_frequency=9.970e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=175/154 RA 1604 . NC_000913 3735666 0 T C bias_e_value=3924540 bias_p_value=0.845948 consensus_score=720.6 fisher_strand_p_value=0.499803 frequency=1 ks_quality_p_value=0.99859 major_base=C major_cov=112/100 major_frequency=9.907e-01 minor_base=T minor_cov=2/0 new_cov=112/100 polymorphism_frequency=9.907e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=114/100 RA 1605 . NC_000913 3737956 0 G C consensus_score=803.0 frequency=1 major_base=C major_cov=105/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=105/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/125 RA 1606 . NC_000913 3737957 0 C G consensus_score=801.4 frequency=1 major_base=G major_cov=104/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/125 RA 1607 . NC_000913 3738723 0 A G consensus_score=905.6 frequency=1 major_base=G major_cov=148/111 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=148/111 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=148/111 RA 1608 . NC_000913 3743457 0 T C consensus_score=801.4 frequency=1 major_base=C major_cov=95/134 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=95/134 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=95/134 RA 1609 . NC_000913 3743603 0 C . consensus_score=1036.6 frequency=1 major_base=. major_cov=92/127 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=92/127 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=92/127 RA 1610 . NC_000913 3745459 0 T C bias_e_value=3072760 bias_p_value=0.662344 consensus_score=843.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.300958 major_base=C major_cov=132/114 major_frequency=9.960e-01 minor_base=T minor_cov=1/0 new_cov=132/114 polymorphism_frequency=9.960e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=133/114 RA 1611 . NC_000913 3754310 0 C A consensus_score=1005.7 frequency=1 major_base=A major_cov=131/123 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=131/123 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/123 RA 1612 . NC_000913 3757754 0 G . bias_e_value=2870090 bias_p_value=0.618657 consensus_score=1198.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.266305 major_base=. major_cov=119/135 major_frequency=9.961e-01 minor_base=G minor_cov=0/1 new_cov=119/135 polymorphism_frequency=9.961e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=0/1 total_cov=119/136 RA 1613 . NC_000913 3758509 0 T C consensus_score=911.5 frequency=1 major_base=C major_cov=154/108 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=154/108 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=154/108 RA 1614 . NC_000913 3758859 0 A G bias_e_value=2027130 bias_p_value=0.436955 consensus_score=1084.6 fisher_strand_p_value=0.202138 frequency=1 ks_quality_p_value=0.748306 major_base=G major_cov=172/139 major_frequency=9.936e-01 minor_base=A minor_cov=0/2 new_cov=172/139 polymorphism_frequency=9.936e-01 polymorphism_score=-2.7 prediction=consensus ref_cov=0/2 total_cov=172/141 RA 1615 . NC_000913 3764283 0 T C consensus_score=708.0 frequency=1 major_base=C major_cov=108/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=108/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=108/105 RA 1616 . NC_000913 3765203 0 A T consensus_score=101.9 frequency=1 major_base=T major_cov=15/13 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/13 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/13 RA 1617 . NC_000913 3765234 0 G A consensus_score=466.0 frequency=1 major_base=A major_cov=52/71 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/71 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/71 RA 1618 . NC_000913 3766847 0 T C bias_e_value=4453320 bias_p_value=0.959929 consensus_score=583.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.730606 major_base=C major_cov=91/74 major_frequency=9.880e-01 minor_base=T minor_cov=1/1 new_cov=91/74 polymorphism_frequency=9.880e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=1/1 total_cov=92/75 RA 1619 . NC_000913 3768546 0 G A bias_e_value=4639220 bias_p_value=1 consensus_score=1051.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=121/154 major_frequency=9.964e-01 minor_base=G minor_cov=0/1 new_cov=121/154 polymorphism_frequency=9.964e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=121/156 RA 1620 . NC_000913 3771793 0 T C bias_e_value=3184960 bias_p_value=0.686529 consensus_score=1006.4 fisher_strand_p_value=0.496503 frequency=1 ks_quality_p_value=0.647891 major_base=C major_cov=141/144 major_frequency=9.965e-01 minor_base=A minor_cov=1/0 new_cov=141/144 polymorphism_frequency=9.965e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/0 total_cov=142/144 RA 1621 . NC_000913 3778301 0 T C consensus_score=896.0 frequency=1 major_base=C major_cov=127/132 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/132 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/132 RA 1622 . NC_000913 3782476 0 A G consensus_score=801.6 frequency=1 major_base=G major_cov=123/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=123/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/107 RA 1623 . NC_000913 3783479 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=777.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=108/118 major_frequency=9.956e-01 minor_base=A minor_cov=0/1 new_cov=108/118 polymorphism_frequency=9.956e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=108/119 RA 1624 . NC_000913 3788398 0 A G bias_e_value=3504760 bias_p_value=0.755463 consensus_score=796.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.388131 major_base=G major_cov=120/115 major_frequency=9.958e-01 minor_base=. minor_cov=1/0 new_cov=120/115 polymorphism_frequency=9.958e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/0 total_cov=121/115 RA 1625 . NC_000913 3807262 0 A G bias_e_value=3898560 bias_p_value=0.840347 consensus_score=778.1 fisher_strand_p_value=0.49115 frequency=1 ks_quality_p_value=0.999961 major_base=G major_cov=115/110 major_frequency=9.956e-01 minor_base=T minor_cov=0/1 new_cov=115/110 polymorphism_frequency=9.956e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/111 RA 1626 . NC_000913 3816074 0 A G consensus_score=865.5 frequency=1 major_base=G major_cov=139/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=139/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=139/109 RA 1627 . NC_000913 3823951 0 T C bias_e_value=3705860 bias_p_value=0.79881 consensus_score=995.1 fisher_strand_p_value=0.437063 frequency=1 ks_quality_p_value=1 major_base=C major_cov=124/161 major_frequency=9.965e-01 minor_base=G minor_cov=1/0 new_cov=124/161 polymorphism_frequency=9.965e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/161 RA 1628 . NC_000913 3825188 0 T C consensus_score=961.6 frequency=1 major_base=C major_cov=143/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=143/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=143/133 RA 1629 . NC_000913 3836443 0 G A bias_e_value=2192590 bias_p_value=0.472621 consensus_score=994.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.170785 major_base=A major_cov=121/137 major_frequency=9.961e-01 minor_base=G minor_cov=0/1 new_cov=121/137 polymorphism_frequency=9.961e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=0/1 total_cov=121/138 RA 1630 . NC_000913 3840766 0 G A consensus_score=805.9 frequency=1 major_base=A major_cov=112/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/94 RA 1631 . NC_000913 3842291 0 G A bias_e_value=3039750 bias_p_value=0.655229 consensus_score=948.0 fisher_strand_p_value=0.448 frequency=1 ks_quality_p_value=0.658664 major_base=A major_cov=138/111 major_frequency=9.960e-01 minor_base=G minor_cov=0/1 new_cov=138/111 polymorphism_frequency=9.960e-01 polymorphism_score=-5.3 prediction=consensus ref_cov=0/1 total_cov=138/112 RA 1632 . NC_000913 3845875 0 A G bias_e_value=4637530 bias_p_value=0.999636 consensus_score=851.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.97313 major_base=G major_cov=114/134 major_frequency=9.960e-01 minor_base=A minor_cov=0/1 new_cov=114/134 polymorphism_frequency=9.960e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=0/1 total_cov=114/135 RA 1633 . NC_000913 3853551 0 T C consensus_score=788.5 frequency=1 major_base=C major_cov=113/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=113/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=113/114 RA 1634 . NC_000913 3854389 0 G A bias_e_value=1753830 bias_p_value=0.378043 consensus_score=899.2 fisher_strand_p_value=0.147925 frequency=1 ks_quality_p_value=0.822775 major_base=A major_cov=91/148 major_frequency=9.917e-01 minor_base=G minor_cov=2/0 new_cov=91/148 polymorphism_frequency=9.917e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=2/0 total_cov=94/148 RA 1635 . NC_000913 3854698 0 T C bias_e_value=3714200 bias_p_value=0.800609 consensus_score=1002.2 fisher_strand_p_value=0.443262 frequency=1 ks_quality_p_value=0.99093 major_base=C major_cov=124/157 major_frequency=9.965e-01 minor_base=T minor_cov=1/0 new_cov=124/157 polymorphism_frequency=9.965e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=1/0 total_cov=125/157 RA 1636 . NC_000913 3857430 0 A G consensus_score=1008.0 frequency=1 major_base=G major_cov=145/144 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=145/144 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=145/144 RA 1637 . NC_000913 3859397 0 A G consensus_score=839.9 frequency=1 major_base=G major_cov=113/125 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=113/125 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=113/125 RA 1638 . NC_000913 3866583 0 A G bias_e_value=2364720 bias_p_value=0.509724 consensus_score=951.0 fisher_strand_p_value=0.243708 frequency=1 ks_quality_p_value=0.790002 major_base=G major_cov=135/140 major_frequency=9.928e-01 minor_base=A minor_cov=2/0 new_cov=135/140 polymorphism_frequency=9.928e-01 polymorphism_score=-3.1 prediction=consensus ref_cov=2/0 total_cov=137/140 RA 1639 . NC_000913 3866718 0 T C consensus_score=823.7 frequency=1 major_base=C major_cov=136/102 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=136/102 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=136/102 RA 1640 . NC_000913 3867245 0 T C consensus_score=984.4 frequency=1 major_base=C major_cov=126/159 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=126/159 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/159 RA 1641 . NC_000913 3870630 0 C . consensus_score=1298.6 frequency=1 major_base=. major_cov=149/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=149/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=149/126 RA 1642 . NC_000913 3870764 1 . G consensus_score=952.8 frequency=1 major_base=G major_cov=132/141 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=132/141 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=132/141 RA 1643 . NC_000913 3870875 0 G . consensus_score=1176.6 frequency=1 major_base=. major_cov=137/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=137/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=137/113 RA 1644 . NC_000913 3872450 1 . G consensus_score=935.6 frequency=1 major_base=G major_cov=133/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=133/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=133/133 RA 1645 . NC_000913 3873625 0 G . consensus_score=1222.7 frequency=1 major_base=. major_cov=151/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=151/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=151/107 RA 1646 . NC_000913 3873986 0 T C consensus_score=1004.7 frequency=1 major_base=C major_cov=129/156 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=129/156 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=129/156 RA 1647 . NC_000913 3876595 0 G C consensus_score=576.5 frequency=1 major_base=C major_cov=20/147 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/147 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/147 RA 1648 . NC_000913 3878432 0 A G consensus_score=795.7 frequency=1 major_base=G major_cov=110/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=110/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/120 RA 1649 . NC_000913 3881483 0 G . consensus_score=1104.1 frequency=1 major_base=. major_cov=91/143 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/143 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/143 RA 1650 . NC_000913 3882952 0 T C consensus_score=895.6 frequency=1 major_base=C major_cov=117/140 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=117/140 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/140 RA 1651 . NC_000913 3886608 0 G A bias_e_value=4639070 bias_p_value=0.999967 consensus_score=901.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99185 major_base=A major_cov=90/144 major_frequency=9.957e-01 minor_base=G minor_cov=0/1 new_cov=90/144 polymorphism_frequency=9.957e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=0/1 total_cov=90/145 RA 1652 . NC_000913 3887809 0 A G consensus_score=717.2 frequency=1 major_base=G major_cov=111/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/94 RA 1653 . NC_000913 3893920 0 C T consensus_score=1129.2 frequency=1 major_base=T major_cov=141/148 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=141/148 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=141/148 RA 1654 . NC_000913 3893936 0 G A consensus_score=1068.4 frequency=1 major_base=A major_cov=127/144 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/144 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/144 RA 1655 . NC_000913 3896324 1 . G bias_e_value=4639220 bias_p_value=1 consensus_score=701.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99995 major_base=G major_cov=111/89 major_frequency=9.950e-01 minor_base=. minor_cov=1/0 new_cov=111/89 polymorphism_frequency=9.950e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/0 total_cov=112/89 RA 1656 . NC_000913 3896435 0 G A consensus_score=809.1 frequency=1 major_base=A major_cov=118/93 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=118/93 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=118/93 RA 1657 . NC_000913 3899440 0 T C bias_e_value=237749 bias_p_value=0.0512476 consensus_score=750.0 fisher_strand_p_value=0.198623 frequency=1 ks_quality_p_value=0.0451547 major_base=C major_cov=99/125 major_frequency=9.912e-01 minor_base=T minor_cov=2/0 new_cov=99/125 polymorphism_frequency=9.912e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=2/0 total_cov=101/125 RA 1658 . NC_000913 3903393 0 G A bias_e_value=4571140 bias_p_value=0.985326 consensus_score=815.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.833651 major_base=A major_cov=104/106 major_frequency=9.906e-01 minor_base=G minor_cov=1/1 new_cov=104/106 polymorphism_frequency=9.906e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=1/1 total_cov=105/107 RA 1659 . NC_000913 3911412 0 A G consensus_score=709.9 frequency=1 major_base=G major_cov=85/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=85/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=85/116 RA 1660 . NC_000913 3923014 0 A G consensus_score=752.6 frequency=1 major_base=G major_cov=95/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=95/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=95/116 RA 1661 . NC_000913 3927062 1 . G consensus_score=845.5 frequency=1 major_base=G major_cov=128/117 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=128/117 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/117 RA 1662 . NC_000913 3929523 0 T C consensus_score=686.2 frequency=1 major_base=C major_cov=91/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/107 RA 1663 . NC_000913 3930457 0 C . bias_e_value=4639220 bias_p_value=1 consensus_score=939.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=114/88 major_frequency=9.951e-01 minor_base=C minor_cov=1/0 new_cov=114/88 polymorphism_frequency=9.951e-01 polymorphism_score=-0.5 prediction=consensus ref_cov=1/0 total_cov=117/88 RA 1664 . NC_000913 3930567 1 . G bias_e_value=3813930 bias_p_value=0.822106 consensus_score=768.2 fisher_strand_p_value=0.466667 frequency=1 ks_quality_p_value=0.999365 major_base=G major_cov=104/120 major_frequency=9.956e-01 minor_base=. minor_cov=1/0 new_cov=104/120 polymorphism_frequency=9.956e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/0 total_cov=105/120 RA 1665 . NC_000913 3930676 1 . G bias_e_value=4639220 bias_p_value=1 consensus_score=777.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999837 major_base=G major_cov=119/102 major_frequency=9.955e-01 minor_base=. minor_cov=1/0 new_cov=119/102 polymorphism_frequency=9.955e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/0 total_cov=120/102 RA 1666 . NC_000913 3931033 0 A G consensus_score=746.6 frequency=1 major_base=G major_cov=136/77 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=136/77 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=136/77 RA 1667 . NC_000913 3935895 0 A G bias_e_value=3903880 bias_p_value=0.841495 consensus_score=828.4 fisher_strand_p_value=0.502996 frequency=1 ks_quality_p_value=0.979629 major_base=G major_cov=129/107 major_frequency=9.916e-01 minor_base=A minor_cov=2/0 new_cov=129/107 polymorphism_frequency=9.916e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=2/0 total_cov=131/107 RA 1668 . NC_000913 3936289 0 A G bias_e_value=3764320 bias_p_value=0.811411 consensus_score=1000.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.452618 major_base=G major_cov=124/163 major_frequency=9.965e-01 minor_base=A minor_cov=0/1 new_cov=124/163 polymorphism_frequency=9.965e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=124/164 RA 1669 . NC_000913 3937900 0 G A bias_e_value=3640180 bias_p_value=0.784652 consensus_score=899.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.420348 major_base=A major_cov=129/109 major_frequency=9.958e-01 minor_base=G minor_cov=1/0 new_cov=129/109 polymorphism_frequency=9.958e-01 polymorphism_score=-5.2 prediction=consensus ref_cov=1/0 total_cov=130/109 RA 1670 . NC_000913 3941734 0 A . consensus_score=152.1 frequency=1 major_base=. major_cov=55/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/32 RA 1671 . NC_000913 3944244 0 C A consensus_score=169.1 frequency=1 major_base=A major_cov=39/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/31 RA 1672 . NC_000913 3944676 0 C G consensus_score=654.4 frequency=1 major_base=G major_cov=91/96 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/96 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/96 RA 1673 . NC_000913 3944677 0 G C consensus_score=656.1 frequency=1 major_base=C major_cov=91/96 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=91/96 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=91/96 RA 1674 . NC_000913 3945350 1 . C bias_e_value=4639220 bias_p_value=1 consensus_score=825.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=111/122 major_frequency=9.957e-01 minor_base=. minor_cov=0/1 new_cov=111/122 polymorphism_frequency=9.957e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=111/123 RA 1675 . NC_000913 3947801 0 A G consensus_score=253.6 frequency=1 major_base=G major_cov=28/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/46 RA 1676 . NC_000913 3950557 0 C G consensus_score=787.3 frequency=1 major_base=G major_cov=119/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=119/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=119/105 RA 1677 . NC_000913 3950558 0 G C bias_e_value=3602560 bias_p_value=0.776544 consensus_score=770.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.41111 major_base=C major_cov=118/105 major_frequency=9.955e-01 minor_base=A minor_cov=1/0 new_cov=118/105 polymorphism_frequency=9.955e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=0/0 total_cov=119/105 RA 1678 . NC_000913 3951166 1 . C consensus_score=354.5 frequency=1 major_base=C major_cov=16/87 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/87 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/87 RA 1679 . NC_000913 3951168 1 . G consensus_score=345.8 frequency=1 major_base=G major_cov=16/87 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/87 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/87 RA 1680 . NC_000913 3957091 1 . C bias_e_value=3957610 bias_p_value=0.853076 consensus_score=362.6 fisher_strand_p_value=0.526633 frequency=1 ks_quality_p_value=0.967488 major_base=C major_cov=10/123 major_frequency=9.366e-01 minor_base=. minor_cov=1/8 new_cov=10/123 polymorphism_frequency=9.366e-01 polymorphism_score=23.2 prediction=consensus ref_cov=1/8 total_cov=11/131 RA 1681 . NC_000913 3957091 2 . C bias_e_value=3889610 bias_p_value=0.83842 consensus_score=363.6 fisher_strand_p_value=0.526633 frequency=1 ks_quality_p_value=0.92746 major_base=C major_cov=10/123 major_frequency=9.366e-01 minor_base=. minor_cov=1/8 new_cov=10/123 polymorphism_frequency=9.366e-01 polymorphism_score=23.2 prediction=consensus ref_cov=1/8 total_cov=11/131 RA 1682 . NC_000913 3957123 1 . G bias_e_value=1296000 bias_p_value=0.279358 consensus_score=561.0 fisher_strand_p_value=0.0796253 frequency=1 ks_quality_p_value=0.991313 major_base=G major_cov=50/131 major_frequency=9.891e-01 minor_base=. minor_cov=2/0 new_cov=50/131 polymorphism_frequency=9.891e-01 polymorphism_score=-0.8 prediction=consensus ref_cov=2/0 total_cov=52/131 RA 1683 . NC_000913 3957547 1 . G bias_e_value=12743.1 bias_p_value=0.00274681 consensus_score=510.9 fisher_strand_p_value=0.0358845 frequency=1 ks_quality_p_value=0.00840584 major_base=G major_cov=75/73 major_frequency=9.250e-01 minor_base=. minor_cov=10/2 new_cov=75/73 polymorphism_frequency=9.250e-01 polymorphism_score=33.6 prediction=consensus ref_cov=10/2 total_cov=85/75 RA 1684 . NC_000913 3957548 0 T G bias_e_value=3821160 bias_p_value=0.823664 consensus_score=545.9 fisher_strand_p_value=0.46875 frequency=1 ks_quality_p_value=0.999293 major_base=G major_cov=85/74 major_frequency=9.938e-01 minor_base=C minor_cov=0/1 new_cov=85/74 polymorphism_frequency=9.938e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=85/75 RA 1685 . NC_000913 3957550 1 . T bias_e_value=3660690 bias_p_value=0.789075 consensus_score=618.8 fisher_strand_p_value=0.475309 frequency=1 ks_quality_p_value=0.895182 major_base=T major_cov=85/76 major_frequency=9.938e-01 minor_base=. minor_cov=0/1 new_cov=85/76 polymorphism_frequency=9.938e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=0/1 total_cov=85/77 RA 1686 . NC_000913 3957558 1 . C consensus_score=616.2 frequency=1 major_base=C major_cov=90/84 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=90/84 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=90/84 RA 1687 . NC_000913 3958877 0 G C bias_e_value=4010560 bias_p_value=0.864489 consensus_score=844.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.526871 major_base=C major_cov=123/115 major_frequency=9.958e-01 minor_base=A minor_cov=1/0 new_cov=123/115 polymorphism_frequency=9.958e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=0/0 total_cov=124/115 RA 1688 . NC_000913 3958878 0 C G consensus_score=840.7 frequency=1 major_base=G major_cov=123/115 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=123/115 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/115 RA 1689 . NC_000913 3960578 0 G C consensus_score=829.9 frequency=1 major_base=C major_cov=109/128 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/128 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/128 RA 1690 . NC_000913 3960579 0 C G consensus_score=822.2 frequency=1 major_base=G major_cov=109/128 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/128 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/128 RA 1691 . NC_000913 3961588 0 C G bias_e_value=1354200 bias_p_value=0.291903 consensus_score=1024.9 fisher_strand_p_value=0.450847 frequency=1 ks_quality_p_value=0.186173 major_base=G major_cov=162/132 major_frequency=9.966e-01 minor_base=T minor_cov=0/1 new_cov=162/132 polymorphism_frequency=9.966e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/0 total_cov=162/133 RA 1692 . NC_000913 3962227 0 T C bias_e_value=4639220 bias_p_value=0.999999 consensus_score=899.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998923 major_base=C major_cov=132/126 major_frequency=9.961e-01 minor_base=T minor_cov=1/0 new_cov=132/126 polymorphism_frequency=9.961e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=1/0 total_cov=133/126 RA 1693 . NC_000913 3963195 0 A G consensus_score=835.8 frequency=1 major_base=G major_cov=105/132 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=105/132 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/132 RA 1694 . NC_000913 3964491 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=828.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999964 major_base=G major_cov=137/97 major_frequency=9.957e-01 minor_base=A minor_cov=1/0 new_cov=137/97 polymorphism_frequency=9.957e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=138/97 RA 1695 . NC_000913 3967593 0 A G consensus_score=891.3 frequency=1 major_base=G major_cov=148/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=148/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=148/105 RA 1696 . NC_000913 3969103 0 C G consensus_score=774.3 frequency=1 major_base=G major_cov=111/111 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/111 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/111 RA 1697 . NC_000913 3969104 0 G C consensus_score=756.8 frequency=1 major_base=C major_cov=111/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/109 RA 1698 . NC_000913 3971075 0 C G consensus_score=728.5 frequency=1 major_base=G major_cov=87/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=87/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=87/122 RA 1699 . NC_000913 3971076 0 G C consensus_score=732.2 frequency=1 major_base=C major_cov=87/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=87/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=87/122 RA 1700 . NC_000913 3972637 0 C G consensus_score=675.3 frequency=1 major_base=G major_cov=97/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=97/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=97/98 RA 1701 . NC_000913 3972638 0 G C consensus_score=673.2 frequency=1 major_base=C major_cov=96/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=96/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=96/98 RA 1702 . NC_000913 3975310 0 C . bias_e_value=4156530 bias_p_value=0.895953 consensus_score=766.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.580021 major_base=. major_cov=77/89 major_frequency=9.651e-01 minor_base=T minor_cov=3/3 new_cov=77/89 polymorphism_frequency=9.651e-01 polymorphism_score=19.6 prediction=consensus ref_cov=0/1 total_cov=80/93 RA 1703 . NC_000913 3978702 0 C T consensus_score=1029.5 frequency=1 major_base=T major_cov=127/138 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=127/138 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=127/138 RA 1704 . NC_000913 3979534 1 . G bias_e_value=4638150 bias_p_value=0.999769 consensus_score=750.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.978592 major_base=G major_cov=105/106 major_frequency=9.953e-01 minor_base=. minor_cov=0/1 new_cov=105/106 polymorphism_frequency=9.953e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=0/1 total_cov=105/107 RA 1705 . NC_000913 3979545 0 G . consensus_score=1069.4 frequency=1 major_base=. major_cov=114/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/113 RA 1706 . NC_000913 3980289 1 . C bias_e_value=4096970 bias_p_value=0.883116 consensus_score=476.5 fisher_strand_p_value=0.666595 frequency=1 ks_quality_p_value=0.836012 major_base=C major_cov=45/98 major_frequency=9.597e-01 minor_base=. minor_cov=1/5 new_cov=45/98 polymorphism_frequency=9.597e-01 polymorphism_score=11.8 prediction=consensus ref_cov=1/5 total_cov=46/103 RA 1707 . NC_000913 3980699 0 G A consensus_score=996.2 frequency=1 major_base=A major_cov=146/108 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=146/108 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=146/108 RA 1708 . NC_000913 3980918 0 G C consensus_score=870.6 frequency=1 major_base=C major_cov=111/137 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=111/137 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=111/137 RA 1709 . NC_000913 3980919 0 C G bias_e_value=4639220 bias_p_value=1 consensus_score=851.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=110/137 major_frequency=9.960e-01 minor_base=T minor_cov=0/1 new_cov=110/137 polymorphism_frequency=9.960e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=110/138 RA 1710 . NC_000913 3986029 0 A G bias_e_value=3895210 bias_p_value=0.839626 consensus_score=879.6 fisher_strand_p_value=0.490119 frequency=1 ks_quality_p_value=1 major_base=G major_cov=129/123 major_frequency=9.960e-01 minor_base=T minor_cov=0/1 new_cov=129/123 polymorphism_frequency=9.960e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=129/124 RA 1711 . NC_000913 3986916 0 C T consensus_score=919.5 frequency=1 major_base=T major_cov=135/117 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=135/117 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=135/117 RA 1712 . NC_000913 3987586 0 C G consensus_score=730.5 frequency=1 major_base=G major_cov=129/85 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=129/85 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=129/85 RA 1713 . NC_000913 3987587 0 G C consensus_score=724.7 frequency=1 major_base=C major_cov=129/85 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=129/85 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=129/85 RA 1714 . NC_000913 3987822 0 G C consensus_score=968.8 frequency=1 major_base=C major_cov=131/147 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=131/147 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/147 RA 1715 . NC_000913 3987823 0 C G consensus_score=947.0 frequency=1 major_base=G major_cov=128/147 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=128/147 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=128/147 RA 1716 . NC_000913 3994771 0 A G bias_e_value=3670780 bias_p_value=0.79125 consensus_score=845.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.428041 major_base=G major_cov=117/122 major_frequency=9.958e-01 minor_base=A minor_cov=0/1 new_cov=117/122 polymorphism_frequency=9.958e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=0/1 total_cov=117/123 RA 1717 . NC_000913 3995353 1 . G bias_e_value=3701930 bias_p_value=0.797963 consensus_score=774.3 fisher_strand_p_value=0.498571 frequency=1 ks_quality_p_value=0.87458 major_base=G major_cov=108/115 major_frequency=9.911e-01 minor_base=. minor_cov=0/2 new_cov=108/115 polymorphism_frequency=9.911e-01 polymorphism_score=-1.1 prediction=consensus ref_cov=0/2 total_cov=108/117 RA 1718 . NC_000913 3998289 1 . G bias_e_value=3246470 bias_p_value=0.699787 consensus_score=715.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.33356 major_base=G major_cov=118/88 major_frequency=9.952e-01 minor_base=. minor_cov=1/0 new_cov=118/88 polymorphism_frequency=9.952e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=1/0 total_cov=119/88 RA 1719 . NC_000913 4001421 0 C G consensus_score=663.1 frequency=1 major_base=G major_cov=94/97 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=94/97 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=94/97 RA 1720 . NC_000913 4001422 0 G C consensus_score=668.2 frequency=1 major_base=C major_cov=94/98 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=94/98 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=94/98 RA 1721 . NC_000913 4001486 0 C G consensus_score=683.1 frequency=1 major_base=G major_cov=115/81 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=115/81 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/81 RA 1722 . NC_000913 4001487 0 G C consensus_score=680.7 frequency=1 major_base=C major_cov=115/81 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=115/81 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/81 RA 1723 . NC_000913 4001717 1 . C consensus_score=701.2 frequency=1 major_base=C major_cov=89/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=89/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=89/119 RA 1724 . NC_000913 4004979 1 . G consensus_score=837.0 frequency=1 major_base=G major_cov=133/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=133/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=133/105 RA 1725 . NC_000913 4004983 1 . G bias_e_value=2291900 bias_p_value=0.494027 consensus_score=769.2 fisher_strand_p_value=0.1925 frequency=1 ks_quality_p_value=0.951395 major_base=G major_cov=126/97 major_frequency=9.911e-01 minor_base=. minor_cov=0/2 new_cov=126/97 polymorphism_frequency=9.911e-01 polymorphism_score=-1.0 prediction=consensus ref_cov=0/2 total_cov=126/100 RA 1726 . NC_000913 4004983 2 . C bias_e_value=1318120 bias_p_value=0.284126 consensus_score=771.9 fisher_strand_p_value=0.085177 frequency=1 ks_quality_p_value=0.948852 major_base=C major_cov=126/97 major_frequency=9.867e-01 minor_base=. minor_cov=0/3 new_cov=126/97 polymorphism_frequency=9.867e-01 polymorphism_score=1.8 prediction=consensus ref_cov=0/3 total_cov=126/100 RA 1727 . NC_000913 4005600 1 . C bias_e_value=4639180 bias_p_value=0.999992 consensus_score=620.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.9959 major_base=C major_cov=72/104 major_frequency=9.944e-01 minor_base=. minor_cov=0/1 new_cov=72/104 polymorphism_frequency=9.944e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=0/1 total_cov=72/105 RA 1728 . NC_000913 4006480 1 . C bias_e_value=4573330 bias_p_value=0.985797 consensus_score=602.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.836261 major_base=C major_cov=96/78 major_frequency=9.886e-01 minor_base=. minor_cov=1/1 new_cov=96/78 polymorphism_frequency=9.886e-01 polymorphism_score=-0.7 prediction=consensus ref_cov=1/1 total_cov=97/79 RA 1729 . NC_000913 4007718 0 G C consensus_score=779.5 frequency=1 major_base=C major_cov=119/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=119/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=119/107 RA 1730 . NC_000913 4007719 0 C G bias_e_value=4638390 bias_p_value=0.999821 consensus_score=785.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.981144 major_base=G major_cov=118/107 major_frequency=9.956e-01 minor_base=A minor_cov=1/0 new_cov=118/107 polymorphism_frequency=9.956e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=0/0 total_cov=119/107 RA 1731 . NC_000913 4007907 1 . G bias_e_value=868033 bias_p_value=0.187107 consensus_score=748.4 fisher_strand_p_value=0.0458274 frequency=1 ks_quality_p_value=1 major_base=G major_cov=119/92 major_frequency=9.548e-01 minor_base=. minor_cov=2/8 new_cov=119/92 polymorphism_frequency=9.548e-01 polymorphism_score=24.6 prediction=consensus ref_cov=2/8 total_cov=121/100 RA 1732 . NC_000913 4007907 2 . G bias_e_value=862446 bias_p_value=0.185903 consensus_score=736.8 fisher_strand_p_value=0.0456147 frequency=1 ks_quality_p_value=0.996111 major_base=G major_cov=119/91 major_frequency=9.545e-01 minor_base=. minor_cov=2/8 new_cov=119/91 polymorphism_frequency=9.545e-01 polymorphism_score=24.6 prediction=consensus ref_cov=2/8 total_cov=121/100 RA 1733 . NC_000913 4008372 1 . A consensus_score=352.0 frequency=1 major_base=A major_cov=31/61 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/61 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/61 RA 1734 . NC_000913 4008391 1 . C consensus_score=258.0 frequency=1 major_base=C major_cov=31/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/44 RA 1735 . NC_000913 4008393 0 C G consensus_score=258.6 frequency=1 major_base=G major_cov=31/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/44 RA 1736 . NC_000913 4008398 1 . A consensus_score=271.9 frequency=1 major_base=A major_cov=30/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/40 RA 1737 . NC_000913 4008398 2 . A consensus_score=269.9 frequency=1 major_base=A major_cov=30/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/40 RA 1738 . NC_000913 4008398 3 . G consensus_score=241.9 frequency=1 major_base=G major_cov=30/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/40 RA 1739 . NC_000913 4008398 4 . A consensus_score=269.7 frequency=1 major_base=A major_cov=30/40 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/40 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/40 RA 1740 . NC_000913 4008402 1 . G bias_e_value=4639220 bias_p_value=1 consensus_score=241.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=30/39 major_frequency=9.857e-01 minor_base=. minor_cov=0/1 new_cov=30/39 polymorphism_frequency=9.857e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=0/1 total_cov=30/40 RA 1741 . NC_000913 4008410 1 . C consensus_score=328.2 frequency=1 major_base=C major_cov=41/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/53 RA 1742 . NC_000913 4008421 1 . T consensus_score=458.9 frequency=1 major_base=T major_cov=48/69 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/69 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/69 RA 1743 . NC_000913 4008429 1 . T consensus_score=404.5 frequency=1 major_base=T major_cov=45/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/59 RA 1744 . NC_000913 4008429 2 . G consensus_score=363.3 frequency=1 major_base=G major_cov=45/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/59 RA 1745 . NC_000913 4008466 1 . G bias_e_value=3905820 bias_p_value=0.841912 consensus_score=540.7 fisher_strand_p_value=0.493506 frequency=1 ks_quality_p_value=0.999661 major_base=G major_cov=75/78 major_frequency=9.935e-01 minor_base=. minor_cov=1/0 new_cov=75/78 polymorphism_frequency=9.935e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/0 total_cov=76/78 RA 1746 . NC_000913 4008472 1 . G bias_e_value=4637810 bias_p_value=0.999697 consensus_score=570.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.975475 major_base=G major_cov=80/84 major_frequency=9.880e-01 minor_base=. minor_cov=1/1 new_cov=80/84 polymorphism_frequency=9.880e-01 polymorphism_score=-0.9 prediction=consensus ref_cov=1/1 total_cov=82/85 RA 1747 . NC_000913 4008491 0 G C bias_e_value=4639220 bias_p_value=1 consensus_score=662.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999944 major_base=C major_cov=97/92 major_frequency=9.947e-01 minor_base=G minor_cov=1/0 new_cov=97/92 polymorphism_frequency=9.947e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=98/92 RA 1748 . NC_000913 4008492 0 C G consensus_score=652.2 frequency=1 major_base=G major_cov=96/90 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=96/90 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=96/90 RA 1749 . NC_000913 4008524 1 . G bias_e_value=3661220 bias_p_value=0.789188 consensus_score=856.8 fisher_strand_p_value=0.42562 frequency=1 ks_quality_p_value=1 major_base=G major_cov=139/102 major_frequency=9.959e-01 minor_base=. minor_cov=0/1 new_cov=139/102 polymorphism_frequency=9.959e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/1 total_cov=139/103 RA 1750 . NC_000913 4013176 0 C G consensus_score=847.4 frequency=1 major_base=G major_cov=137/106 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=137/106 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=137/106 RA 1751 . NC_000913 4013177 1 . C consensus_score=851.4 frequency=1 major_base=C major_cov=137/107 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=137/107 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=137/107 RA 1752 . NC_000913 4013717 1 . G consensus_score=882.0 frequency=1 major_base=G major_cov=125/129 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/129 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/129 RA 1753 . NC_000913 4013770 1 . C consensus_score=830.1 frequency=1 major_base=C major_cov=126/110 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=126/110 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/110 RA 1754 . NC_000913 4016743 0 C T consensus_score=906.2 frequency=1 major_base=T major_cov=120/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=120/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/112 RA 1755 . NC_000913 4016796 0 T C bias_e_value=4639220 bias_p_value=1 consensus_score=954.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999322 major_base=C major_cov=144/127 major_frequency=9.963e-01 minor_base=T minor_cov=1/0 new_cov=144/127 polymorphism_frequency=9.963e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=145/127 RA 1756 . NC_000913 4017086 0 T C bias_e_value=3723150 bias_p_value=0.802537 consensus_score=881.6 fisher_strand_p_value=0.458167 frequency=1 ks_quality_p_value=0.963826 major_base=C major_cov=136/114 major_frequency=9.960e-01 minor_base=T minor_cov=0/1 new_cov=136/114 polymorphism_frequency=9.960e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=136/116 RA 1757 . NC_000913 4018552 0 A G consensus_score=749.2 frequency=1 major_base=G major_cov=115/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=115/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/101 RA 1758 . NC_000913 4019857 0 C T consensus_score=739.4 frequency=1 major_base=T major_cov=102/89 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=102/89 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/89 RA 1759 . NC_000913 4019860 0 C . bias_e_value=4639220 bias_p_value=1 consensus_score=884.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=100/89 major_frequency=9.947e-01 minor_base=C minor_cov=1/0 new_cov=100/89 polymorphism_frequency=9.947e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=1/0 total_cov=101/89 RA 1760 . NC_000913 4019861 0 C . consensus_score=893.3 frequency=1 major_base=. major_cov=101/89 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=101/89 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=101/89 RA 1761 . NC_000913 4021683 0 C . bias_e_value=4639220 bias_p_value=1 consensus_score=1034.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=98/122 major_frequency=9.955e-01 minor_base=G minor_cov=0/1 new_cov=98/122 polymorphism_frequency=9.955e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/0 total_cov=98/123 RA 1762 . NC_000913 4026252 0 C G consensus_score=887.0 frequency=1 major_base=G major_cov=122/137 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=122/137 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=122/137 RA 1763 . NC_000913 4026253 0 G C consensus_score=877.5 frequency=1 major_base=C major_cov=120/139 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=120/139 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=120/139 RA 1764 . NC_000913 4027599 0 T C bias_e_value=3778050 bias_p_value=0.814371 consensus_score=853.6 fisher_strand_p_value=0.45935 frequency=1 ks_quality_p_value=0.993517 major_base=C major_cov=112/133 major_frequency=9.959e-01 minor_base=T minor_cov=1/0 new_cov=112/133 polymorphism_frequency=9.959e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=1/0 total_cov=113/133 RA 1765 . NC_000913 4028399 0 G A bias_e_value=4626700 bias_p_value=0.997302 consensus_score=914.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.927448 major_base=A major_cov=119/133 major_frequency=9.960e-01 minor_base=G minor_cov=0/1 new_cov=119/133 polymorphism_frequency=9.960e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=0/1 total_cov=119/134 RA 1766 . NC_000913 4031983 1 . C consensus_score=748.1 frequency=1 major_base=C major_cov=115/100 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=115/100 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=115/100 RA 1767 . NC_000913 4039349 0 T C consensus_score=878.2 frequency=1 major_base=C major_cov=131/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=131/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/120 RA 1768 . NC_000913 4039959 0 A . consensus_score=1155.5 frequency=1 major_base=. major_cov=122/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=122/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=122/122 RA 1769 . NC_000913 4041654 0 G A consensus_score=143.2 frequency=1 major_base=A major_cov=1/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=1/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=1/36 RA 1770 . NC_000913 4041665 1 . T consensus_score=33.5 frequency=1 major_base=T major_cov=2/8 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=2/8 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=2/8 RA 1771 . NC_000913 4051143 0 C . consensus_score=679.2 frequency=1 major_base=. major_cov=97/99 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=97/99 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=97/99 RA 1772 . NC_000913 4051170 1 . C consensus_score=542.0 frequency=1 major_base=C major_cov=98/87 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=98/87 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/87 RA 1773 . NC_000913 4057758 1 . C bias_e_value=1759470 bias_p_value=0.37926 consensus_score=850.1 fisher_strand_p_value=0.122356 frequency=1 ks_quality_p_value=0.999445 major_base=C major_cov=118/120 major_frequency=9.835e-01 minor_base=. minor_cov=0/4 new_cov=118/120 polymorphism_frequency=9.835e-01 polymorphism_score=4.2 prediction=consensus ref_cov=0/4 total_cov=118/124 RA 1774 . NC_000913 4057851 0 T . bias_e_value=3737470 bias_p_value=0.805625 consensus_score=980.3 fisher_strand_p_value=0.490476 frequency=1 ks_quality_p_value=0.90808 major_base=. major_cov=107/102 major_frequency=9.952e-01 minor_base=T minor_cov=0/1 new_cov=107/102 polymorphism_frequency=9.952e-01 polymorphism_score=-2.6 prediction=consensus ref_cov=0/1 total_cov=107/103 RA 1775 . NC_000913 4058326 0 A G consensus_score=595.5 frequency=1 major_base=G major_cov=93/80 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=93/80 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=93/80 RA 1776 . NC_000913 4059768 0 A G consensus_score=896.4 frequency=1 major_base=G major_cov=123/129 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=123/129 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/129 RA 1777 . NC_000913 4061959 0 C . bias_e_value=2720870 bias_p_value=0.586492 consensus_score=1019.9 fisher_strand_p_value=0.247157 frequency=1 ks_quality_p_value=0.982386 major_base=. major_cov=111/108 major_frequency=9.865e-01 minor_base=C minor_cov=3/0 new_cov=111/108 polymorphism_frequency=9.865e-01 polymorphism_score=2.7 prediction=consensus ref_cov=3/0 total_cov=114/108 RA 1778 . NC_000913 4066222 0 T C consensus_score=954.1 frequency=1 major_base=C major_cov=131/138 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=131/138 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/138 RA 1779 . NC_000913 4071652 0 A G bias_e_value=3166070 bias_p_value=0.682457 consensus_score=822.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.318107 major_base=G major_cov=103/137 major_frequency=9.959e-01 minor_base=A minor_cov=0/1 new_cov=103/137 polymorphism_frequency=9.959e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=103/138 RA 1780 . NC_000913 4085675 0 G . bias_e_value=3639880 bias_p_value=0.784588 consensus_score=938.6 fisher_strand_p_value=0.420792 frequency=1 ks_quality_p_value=0.998769 major_base=. major_cov=117/84 major_frequency=9.950e-01 minor_base=C minor_cov=0/1 new_cov=117/84 polymorphism_frequency=9.950e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=0/0 total_cov=117/85 RA 1781 . NC_000913 4088793 0 T C bias_e_value=3502160 bias_p_value=0.754902 consensus_score=793.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.387539 major_base=C major_cov=105/124 major_frequency=9.957e-01 minor_base=T minor_cov=0/1 new_cov=105/124 polymorphism_frequency=9.957e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=105/125 RA 1782 . NC_000913 4090715 0 T G bias_e_value=5.69124e-12 bias_p_value=1.22677e-18 consensus_reject=FREQUENCY_CUTOFF consensus_score=418.5 fisher_strand_p_value=2.6627e-20 frequency=2.632e-01 ks_quality_p_value=1 major_base=T major_cov=43/97 major_frequency=7.368e-01 minor_base=G minor_cov=50/0 new_cov=50/0 polymorphism_frequency=2.632e-01 polymorphism_score=40.9 prediction=polymorphism ref_cov=43/97 total_cov=93/97 RA 1783 . NC_000913 4091351 0 C T bias_e_value=4639220 bias_p_value=1 consensus_score=911.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999857 major_base=T major_cov=118/118 major_frequency=9.958e-01 minor_base=C minor_cov=1/0 new_cov=118/118 polymorphism_frequency=9.958e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=119/118 RA 1784 . NC_000913 4097268 0 T C bias_e_value=3569800 bias_p_value=0.769482 consensus_score=802.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.403251 major_base=C major_cov=112/119 major_frequency=9.957e-01 minor_base=T minor_cov=0/1 new_cov=112/119 polymorphism_frequency=9.957e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=112/120 RA 1785 . NC_000913 4103519 1 . T bias_e_value=3352500 bias_p_value=0.722642 consensus_score=778.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.354991 major_base=T major_cov=95/106 major_frequency=9.950e-01 minor_base=. minor_cov=0/1 new_cov=95/106 polymorphism_frequency=9.950e-01 polymorphism_score=-3.3 prediction=consensus ref_cov=0/1 total_cov=95/107 RA 1786 . NC_000913 4108732 0 T C consensus_score=864.7 frequency=1 major_base=C major_cov=124/128 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/128 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/128 RA 1787 . NC_000913 4109226 0 A G consensus_score=870.4 frequency=1 major_base=G major_cov=145/102 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=145/102 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=145/102 RA 1788 . NC_000913 4114335 0 T C consensus_score=900.6 frequency=1 major_base=C major_cov=130/127 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=130/127 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=130/127 RA 1789 . NC_000913 4130398 0 A G consensus_score=836.8 frequency=1 major_base=G major_cov=126/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=126/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=126/114 RA 1790 . NC_000913 4132580 0 T A bias_e_value=1084690 bias_p_value=0.233809 consensus_score=927.7 fisher_strand_p_value=0.0617883 frequency=1 ks_quality_p_value=1 major_base=A major_cov=156/100 major_frequency=9.884e-01 minor_base=G minor_cov=0/3 new_cov=156/100 polymorphism_frequency=9.884e-01 polymorphism_score=-6.2 prediction=consensus ref_cov=0/1 total_cov=156/106 RA 1791 . NC_000913 4139091 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=929.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99989 major_base=G major_cov=123/146 major_frequency=9.963e-01 minor_base=T minor_cov=0/1 new_cov=123/146 polymorphism_frequency=9.963e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/147 RA 1792 . NC_000913 4139667 1 . C bias_e_value=669201 bias_p_value=0.144249 consensus_score=948.5 fisher_strand_p_value=0.243522 frequency=1 ks_quality_p_value=0.133922 major_base=C major_cov=136/131 major_frequency=9.926e-01 minor_base=. minor_cov=0/2 new_cov=136/131 polymorphism_frequency=9.926e-01 polymorphism_score=-1.1 prediction=consensus ref_cov=0/2 total_cov=137/133 RA 1793 . NC_000913 4145321 0 T C consensus_score=627.7 frequency=1 major_base=C major_cov=98/84 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=98/84 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=98/84 RA 1794 . NC_000913 4155035 0 A G bias_e_value=3295230 bias_p_value=0.710299 consensus_score=785.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.343262 major_base=G major_cov=96/136 major_frequency=9.957e-01 minor_base=A minor_cov=0/1 new_cov=96/136 polymorphism_frequency=9.957e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=0/1 total_cov=96/137 RA 1795 . NC_000913 4158733 0 A C bias_e_value=5.04103e-17 bias_p_value=1.08661e-23 consensus_reject=FREQUENCY_CUTOFF consensus_score=571.4 fisher_strand_p_value=1.87555e-25 frequency=2.055e-01 ks_quality_p_value=1 major_base=A major_cov=140/34 major_frequency=7.945e-01 minor_base=C minor_cov=0/45 new_cov=0/45 polymorphism_frequency=2.055e-01 polymorphism_score=21.2 prediction=polymorphism ref_cov=140/34 total_cov=140/79 RA 1796 . NC_000913 4158827 0 G T consensus_score=984.2 frequency=1 major_base=T major_cov=124/137 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/137 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/137 RA 1797 . NC_000913 4161702 0 C G bias_e_value=4639220 bias_p_value=1 consensus_score=826.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=113/120 major_frequency=9.957e-01 minor_base=C minor_cov=0/1 new_cov=113/120 polymorphism_frequency=9.957e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=113/121 RA 1798 . NC_000913 4162448 0 A G bias_e_value=2694400 bias_p_value=0.580787 consensus_score=729.6 fisher_strand_p_value=0.483412 frequency=1 ks_quality_p_value=0.493981 major_base=G major_cov=109/101 major_frequency=9.953e-01 minor_base=A minor_cov=0/1 new_cov=109/101 polymorphism_frequency=9.953e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=0/1 total_cov=109/102 RA 1799 . NC_000913 4170208 0 T C bias_e_value=4484240 bias_p_value=0.966594 consensus_score=888.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.752913 major_base=C major_cov=133/124 major_frequency=9.961e-01 minor_base=T minor_cov=1/0 new_cov=133/124 polymorphism_frequency=9.961e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=134/124 RA 1800 . NC_000913 4171680 0 A G consensus_score=727.7 frequency=1 major_base=G major_cov=117/89 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=117/89 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=117/89 RA 1801 . NC_000913 4175947 1 . G bias_e_value=4636720 bias_p_value=0.99946 consensus_score=727.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.967326 major_base=G major_cov=102/107 major_frequency=9.952e-01 minor_base=. minor_cov=0/1 new_cov=102/107 polymorphism_frequency=9.952e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=0/1 total_cov=102/108 RA 1802 . NC_000913 4182169 0 A G bias_e_value=3934140 bias_p_value=0.848018 consensus_score=967.7 fisher_strand_p_value=0.504604 frequency=1 ks_quality_p_value=0.995018 major_base=G major_cov=156/126 major_frequency=9.930e-01 minor_base=A minor_cov=2/0 new_cov=156/126 polymorphism_frequency=9.930e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=2/0 total_cov=158/126 RA 1803 . NC_000913 4182994 0 G A bias_e_value=2504840 bias_p_value=0.539927 consensus_score=885.9 fisher_strand_p_value=0.211407 frequency=1 ks_quality_p_value=1 major_base=A major_cov=131/110 major_frequency=9.918e-01 minor_base=C minor_cov=0/2 new_cov=131/110 polymorphism_frequency=9.918e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=131/113 RA 1804 . NC_000913 4194577 0 C G consensus_score=535.6 frequency=1 major_base=G major_cov=60/96 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/96 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/96 RA 1805 . NC_000913 4194578 0 G C bias_e_value=3489110 bias_p_value=0.752089 consensus_score=532.2 fisher_strand_p_value=0.384615 frequency=1 ks_quality_p_value=0.999917 major_base=C major_cov=59/96 major_frequency=9.936e-01 minor_base=G minor_cov=1/0 new_cov=59/96 polymorphism_frequency=9.936e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=60/96 RA 1806 . NC_000913 4200901 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=987.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=141/140 major_frequency=9.965e-01 minor_base=A minor_cov=0/1 new_cov=141/140 polymorphism_frequency=9.965e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=141/141 RA 1807 . NC_000913 4221172 0 T G bias_e_value=4.22868e-13 bias_p_value=9.11506e-20 consensus_reject=FREQUENCY_CUTOFF consensus_score=551.8 fisher_strand_p_value=1.8706e-21 frequency=2.018e-01 ks_quality_p_value=1 major_base=T major_cov=45/129 major_frequency=7.982e-01 minor_base=G minor_cov=44/0 new_cov=44/0 polymorphism_frequency=2.018e-01 polymorphism_score=33.8 prediction=polymorphism ref_cov=45/129 total_cov=89/129 RA 1808 . NC_000913 4228096 0 A G consensus_score=820.5 frequency=1 major_base=G major_cov=123/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=123/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/109 RA 1809 . NC_000913 4234288 0 A G bias_e_value=3849700 bias_p_value=0.829816 consensus_score=744.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.476625 major_base=G major_cov=104/114 major_frequency=9.954e-01 minor_base=A minor_cov=0/1 new_cov=104/114 polymorphism_frequency=9.954e-01 polymorphism_score=-4.8 prediction=consensus ref_cov=0/1 total_cov=104/115 RA 1810 . NC_000913 4244613 0 A G consensus_score=876.2 frequency=1 major_base=G major_cov=135/114 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=135/114 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=135/114 RA 1811 . NC_000913 4247622 0 A G consensus_score=800.3 frequency=1 major_base=G major_cov=119/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=119/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=119/113 RA 1812 . NC_000913 4253010 0 G A consensus_score=916.7 frequency=1 major_base=A major_cov=140/93 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=140/93 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=140/93 RA 1813 . NC_000913 4253868 0 A G consensus_score=862.3 frequency=1 major_base=G major_cov=114/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/133 RA 1814 . NC_000913 4255791 0 A G consensus_score=713.4 frequency=1 major_base=G major_cov=108/100 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=108/100 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=108/100 RA 1815 . NC_000913 4263561 0 T C consensus_score=802.7 frequency=1 major_base=C major_cov=105/126 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=105/126 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/126 RA 1816 . NC_000913 4288835 0 T C consensus_score=753.4 frequency=1 major_base=C major_cov=116/102 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/102 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/102 RA 1817 . NC_000913 4291199 0 T A consensus_score=982.0 frequency=1 major_base=A major_cov=123/134 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=123/134 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=123/134 RA 1818 . NC_000913 4293107 0 A G consensus_score=916.7 frequency=1 major_base=G major_cov=146/120 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=146/120 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=146/120 RA 1819 . NC_000913 4293639 0 C T bias_e_value=256.999 bias_p_value=5.5397e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=776.6 fisher_strand_p_value=2.77502e-05 frequency=2.705e-01 ks_quality_p_value=0.149021 major_base=C major_cov=189/167 major_frequency=7.295e-01 minor_base=T minor_cov=42/90 new_cov=42/90 polymorphism_frequency=2.705e-01 polymorphism_score=inf prediction=polymorphism ref_cov=189/167 total_cov=231/257 RA 1820 . NC_000913 4293959 1 . C consensus_score=166.0 frequency=1 major_base=C major_cov=32/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/51 RA 1821 . NC_000913 4293959 2 . G consensus_score=165.8 frequency=1 major_base=G major_cov=32/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/51 RA 1822 . NC_000913 4296466 0 A G consensus_score=893.3 frequency=1 major_base=G major_cov=141/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=141/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=141/113 RA 1823 . NC_000913 4310789 0 T C consensus_score=413.6 frequency=1 major_base=C major_cov=96/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=96/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=96/23 RA 1824 . NC_000913 4311495 1 . C bias_e_value=3785400 bias_p_value=0.815955 consensus_score=819.4 fisher_strand_p_value=0.46383 frequency=1 ks_quality_p_value=0.988285 major_base=C major_cov=126/108 major_frequency=9.957e-01 minor_base=. minor_cov=0/1 new_cov=126/108 polymorphism_frequency=9.957e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=0/1 total_cov=126/109 RA 1825 . NC_000913 4312334 0 A G bias_e_value=3668420 bias_p_value=0.790741 consensus_score=808.3 fisher_strand_p_value=0.466102 frequency=1 ks_quality_p_value=0.917058 major_base=G major_cov=126/109 major_frequency=9.958e-01 minor_base=A minor_cov=0/1 new_cov=126/109 polymorphism_frequency=9.958e-01 polymorphism_score=-5.0 prediction=consensus ref_cov=0/1 total_cov=126/110 RA 1826 . NC_000913 4315095 0 C T bias_e_value=4608970 bias_p_value=0.993479 consensus_score=991.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.887991 major_base=T major_cov=122/136 major_frequency=9.961e-01 minor_base=C minor_cov=0/1 new_cov=122/136 polymorphism_frequency=9.961e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=0/1 total_cov=122/137 RA 1827 . NC_000913 4316203 0 T A consensus_score=1082.5 frequency=1 major_base=A major_cov=138/142 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=138/142 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=138/142 RA 1828 . NC_000913 4325494 0 C G bias_e_value=4639220 bias_p_value=1 consensus_score=805.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=117/113 major_frequency=9.957e-01 minor_base=C minor_cov=1/0 new_cov=117/113 polymorphism_frequency=9.957e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=118/113 RA 1829 . NC_000913 4334019 0 A G bias_e_value=4421010 bias_p_value=0.952964 consensus_score=884.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.709405 major_base=G major_cov=144/111 major_frequency=9.922e-01 minor_base=A minor_cov=1/1 new_cov=144/111 polymorphism_frequency=9.922e-01 polymorphism_score=-2.9 prediction=consensus ref_cov=1/1 total_cov=145/112 RA 1830 . NC_000913 4337885 0 A G consensus_score=904.9 frequency=1 major_base=G major_cov=125/132 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/132 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/132 RA 1831 . NC_000913 4354595 0 A G consensus_score=686.1 frequency=1 major_base=G major_cov=104/94 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/94 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/94 RA 1832 . NC_000913 4362298 0 T C bias_e_value=3921790 bias_p_value=0.845354 consensus_score=978.0 fisher_strand_p_value=0.498246 frequency=1 ks_quality_p_value=1 major_base=C major_cov=143/141 major_frequency=9.965e-01 minor_base=G minor_cov=0/1 new_cov=143/141 polymorphism_frequency=9.965e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=143/142 RA 1833 . NC_000913 4372763 0 T C consensus_score=845.3 frequency=1 major_base=C major_cov=102/141 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=102/141 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=102/141 RA 1834 . NC_000913 4384043 0 A G consensus_score=787.0 frequency=1 major_base=G major_cov=104/123 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=104/123 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=104/123 RA 1835 . NC_000913 4389966 0 A G consensus_score=753.8 frequency=1 major_base=G major_cov=134/85 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=134/85 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=134/85 RA 1836 . NC_000913 4392647 0 G . bias_e_value=2875070 bias_p_value=0.619731 consensus_score=830.3 fisher_strand_p_value=0.568194 frequency=1 ks_quality_p_value=0.470118 major_base=. major_cov=94/96 major_frequency=9.360e-01 minor_base=G minor_cov=8/5 new_cov=94/96 polymorphism_frequency=9.360e-01 polymorphism_score=42.3 prediction=consensus ref_cov=8/5 total_cov=102/101 RA 1837 . NC_000913 4395798 0 A G consensus_score=832.1 frequency=1 major_base=G major_cov=118/122 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=118/122 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=118/122 RA 1838 . NC_000913 4402992 0 A G consensus_score=937.4 frequency=1 major_base=G major_cov=130/133 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=130/133 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=130/133 RA 1839 . NC_000913 4413673 0 C T consensus_score=992.0 frequency=1 major_base=T major_cov=136/116 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=136/116 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=136/116 RA 1840 . NC_000913 4413828 0 A G consensus_score=1008.5 frequency=1 major_base=G major_cov=146/137 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=146/137 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=146/137 RA 1841 . NC_000913 4433048 0 A G consensus_score=887.1 frequency=1 major_base=G major_cov=125/124 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/124 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/124 RA 1842 . NC_000913 4435681 1 . A bias_e_value=4639210 bias_p_value=0.999998 consensus_score=752.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997997 major_base=A major_cov=98/91 major_frequency=9.947e-01 minor_base=. minor_cov=1/0 new_cov=98/91 polymorphism_frequency=9.947e-01 polymorphism_score=-3.5 prediction=consensus ref_cov=1/0 total_cov=99/91 RA 1843 . NC_000913 4444741 0 A G bias_e_value=4639220 bias_p_value=1 consensus_score=984.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=139/146 major_frequency=9.965e-01 minor_base=C minor_cov=0/1 new_cov=139/146 polymorphism_frequency=9.965e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=139/147 RA 1844 . NC_000913 4448541 1 . C consensus_score=617.8 frequency=1 major_base=C major_cov=135/73 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=135/73 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=135/73 RA 1845 . NC_000913 4448542 1 . C consensus_score=624.8 frequency=1 major_base=C major_cov=135/75 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=135/75 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=135/75 RA 1846 . NC_000913 4449737 1 . G bias_e_value=3729520 bias_p_value=0.803911 consensus_score=916.6 fisher_strand_p_value=0.463602 frequency=1 ks_quality_p_value=0.956162 major_base=G major_cov=120/140 major_frequency=9.962e-01 minor_base=. minor_cov=1/0 new_cov=120/140 polymorphism_frequency=9.962e-01 polymorphism_score=-4.0 prediction=consensus ref_cov=1/0 total_cov=121/140 RA 1847 . NC_000913 4467145 0 A G consensus_score=763.7 frequency=1 major_base=G major_cov=112/106 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/106 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/106 RA 1848 . NC_000913 4472408 0 A G consensus_score=1063.6 frequency=1 major_base=G major_cov=149/153 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=149/153 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=149/153 RA 1849 . NC_000913 4474823 1 . A consensus_score=631.3 frequency=1 major_base=A major_cov=109/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/52 RA 1850 . NC_000913 4476406 0 A G bias_e_value=3410110 bias_p_value=0.735061 consensus_score=795.9 fisher_strand_p_value=0.441558 frequency=1 ks_quality_p_value=0.831559 major_base=G major_cov=101/129 major_frequency=9.957e-01 minor_base=A minor_cov=1/0 new_cov=101/129 polymorphism_frequency=9.957e-01 polymorphism_score=-4.6 prediction=consensus ref_cov=1/0 total_cov=102/129 RA 1851 . NC_000913 4477041 0 G . consensus_score=900.5 frequency=1 major_base=. major_cov=61/129 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/129 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/129 RA 1852 . NC_000913 4477068 1 . C consensus_score=650.9 frequency=1 major_base=C major_cov=48/138 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/138 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/138 RA 1853 . NC_000913 4477279 0 T . consensus_score=633.5 frequency=1 major_base=. major_cov=82/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=82/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=82/52 RA 1854 . NC_000913 4477321 0 A . consensus_score=632.7 frequency=1 major_base=. major_cov=78/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=78/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=78/56 RA 1855 . NC_000913 4478497 0 A . bias_e_value=1888300 bias_p_value=0.40703 consensus_score=854.0 fisher_strand_p_value=0.143267 frequency=1 ks_quality_p_value=0.948216 major_base=. major_cov=105/77 major_frequency=9.785e-01 minor_base=A minor_cov=4/0 new_cov=105/77 polymorphism_frequency=9.785e-01 polymorphism_score=10.5 prediction=consensus ref_cov=4/0 total_cov=109/77 RA 1856 . NC_000913 4478511 0 T . bias_e_value=4639220 bias_p_value=1 consensus_score=851.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=97/85 major_frequency=9.945e-01 minor_base=G minor_cov=1/0 new_cov=97/85 polymorphism_frequency=9.945e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/0 total_cov=98/85 RA 1857 . NC_000913 4478527 0 G . consensus_score=973.9 frequency=1 major_base=. major_cov=114/92 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=114/92 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=114/92 RA 1858 . NC_000913 4485284 0 T C bias_e_value=3855310 bias_p_value=0.831026 consensus_score=877.7 fisher_strand_p_value=0.478261 frequency=1 ks_quality_p_value=1 major_base=C major_cov=132/120 major_frequency=9.960e-01 minor_base=T minor_cov=0/1 new_cov=132/120 polymorphism_frequency=9.960e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=132/121 RA 1859 . NC_000913 4490864 0 T C consensus_score=657.1 frequency=1 major_base=C major_cov=83/104 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=83/104 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=83/104 RA 1860 . NC_000913 4502680 0 C T bias_e_value=4639220 bias_p_value=1 consensus_score=591.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999923 major_base=T major_cov=93/68 major_frequency=9.938e-01 minor_base=C minor_cov=1/0 new_cov=93/68 polymorphism_frequency=9.938e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=95/68 RA 1861 . NC_000913 4508696 0 A G consensus_score=833.6 frequency=1 major_base=G major_cov=132/109 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=132/109 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=132/109 RA 1862 . NC_000913 4532411 0 A G consensus_score=821.8 frequency=1 major_base=G major_cov=124/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=124/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=124/112 RA 1863 . NC_000913 4542425 0 A G bias_e_value=4062430 bias_p_value=0.87567 consensus_score=741.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.544789 major_base=G major_cov=101/109 major_frequency=9.953e-01 minor_base=A minor_cov=0/1 new_cov=101/109 polymorphism_frequency=9.953e-01 polymorphism_score=-4.7 prediction=consensus ref_cov=0/1 total_cov=101/110 RA 1864 . NC_000913 4542640 0 G . bias_e_value=3920090 bias_p_value=0.844988 consensus_score=981.8 fisher_strand_p_value=0.497901 frequency=1 ks_quality_p_value=0.999637 major_base=. major_cov=106/103 major_frequency=9.905e-01 minor_base=G minor_cov=2/0 new_cov=106/103 polymorphism_frequency=9.905e-01 polymorphism_score=-0.4 prediction=consensus ref_cov=2/0 total_cov=108/103 RA 1865 . NC_000913 4544170 0 T C bias_e_value=3720680 bias_p_value=0.802006 consensus_score=899.7 fisher_strand_p_value=0.440945 frequency=1 ks_quality_p_value=1 major_base=C major_cov=142/111 major_frequency=9.961e-01 minor_base=A minor_cov=0/1 new_cov=142/111 polymorphism_frequency=9.961e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=142/112 RA 1866 . NC_000913 4545947 0 G A consensus_score=1013.2 frequency=1 major_base=A major_cov=112/146 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=112/146 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=112/146 RA 1867 . NC_000913 4555245 0 T C consensus_score=881.7 frequency=1 major_base=C major_cov=136/113 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=136/113 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=136/113 RA 1868 . NC_000913 4561348 0 A G consensus_score=601.4 frequency=1 major_base=G major_cov=80/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=80/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=80/101 RA 1869 . NC_000913 4561662 0 A G consensus_score=811.7 frequency=1 major_base=G major_cov=135/100 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=135/100 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=135/100 RA 1870 . NC_000913 4566073 0 T G bias_e_value=3.41111e-05 bias_p_value=7.35276e-12 consensus_reject=FREQUENCY_CUTOFF consensus_score=474.6 fisher_strand_p_value=2.44779e-13 frequency=2.488e-01 ks_quality_p_value=1 major_base=T major_cov=84/79 major_frequency=7.512e-01 minor_base=G minor_cov=54/0 new_cov=54/0 polymorphism_frequency=2.488e-01 polymorphism_score=12.5 prediction=polymorphism ref_cov=84/79 total_cov=138/79 RA 1871 . NC_000913 4572272 0 G A consensus_score=1150.3 frequency=1 major_base=A major_cov=139/154 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=139/154 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=139/154 RA 1872 . NC_000913 4573189 0 G . consensus_score=984.3 frequency=1 major_base=. major_cov=107/101 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=107/101 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=107/101 RA 1873 . NC_000913 4583050 0 G A consensus_score=1113.8 frequency=1 major_base=A major_cov=140/148 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=140/148 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=140/148 RA 1874 . NC_000913 4589187 0 A G consensus_score=568.3 frequency=1 major_base=G major_cov=116/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=116/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=116/49 RA 1875 . NC_000913 4593254 0 C G consensus_score=733.3 frequency=1 major_base=G major_cov=106/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=106/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=106/105 RA 1876 . NC_000913 4593255 0 G C consensus_score=725.6 frequency=1 major_base=C major_cov=106/105 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=106/105 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=106/105 RA 1877 . NC_000913 4593335 1 . G consensus_score=658.5 frequency=1 major_base=G major_cov=75/112 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=75/112 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=75/112 RA 1878 . NC_000913 4595908 0 T C consensus_score=890.7 frequency=1 major_base=C major_cov=122/132 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=122/132 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=122/132 RA 1879 . NC_000913 4600078 0 C T consensus_score=1141.5 frequency=1 major_base=T major_cov=152/137 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=152/137 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=152/137 RA 1880 . NC_000913 4601332 0 A G bias_e_value=4562740 bias_p_value=0.983514 consensus_score=850.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.824003 major_base=G major_cov=132/115 major_frequency=9.960e-01 minor_base=A minor_cov=1/0 new_cov=132/115 polymorphism_frequency=9.960e-01 polymorphism_score=-4.9 prediction=consensus ref_cov=1/0 total_cov=133/115 RA 1881 . NC_000913 4603655 1 . G bias_e_value=4254000 bias_p_value=0.916964 consensus_score=558.5 fisher_strand_p_value=0.746804 frequency=1 ks_quality_p_value=0.831837 major_base=G major_cov=107/59 major_frequency=9.432e-01 minor_base=. minor_cov=6/4 new_cov=107/59 polymorphism_frequency=9.432e-01 polymorphism_score=25.4 prediction=consensus ref_cov=6/4 total_cov=113/63 RA 1882 . NC_000913 4606898 0 T C bias_e_value=4121160 bias_p_value=0.888329 consensus_score=453.6 fisher_strand_p_value=0.778017 frequency=1 ks_quality_p_value=0.727907 major_base=C major_cov=56/74 major_frequency=9.028e-01 minor_base=. minor_cov=7/7 new_cov=56/74 polymorphism_frequency=9.028e-01 polymorphism_score=40.4 prediction=consensus ref_cov=0/0 total_cov=63/81 RA 1883 . NC_000913 4608595 0 C G consensus_score=868.7 frequency=1 major_base=G major_cov=101/151 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=101/151 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=101/151 RA 1884 . NC_000913 4608596 0 G C consensus_score=886.8 frequency=1 major_base=C major_cov=101/151 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=101/151 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=101/151 RA 1885 . NC_000913 4614238 0 G T consensus_score=1054.1 frequency=1 major_base=T major_cov=148/119 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=148/119 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=148/119 RA 1886 . NC_000913 4618604 0 T C consensus_score=786.2 frequency=1 major_base=C major_cov=93/130 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=93/130 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=93/130 RA 1887 . NC_000913 4626495 0 A G consensus_score=1087.6 frequency=1 major_base=G major_cov=125/182 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=125/182 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=125/182 RA 1888 . NC_000913 4632259 0 T C consensus_score=951.9 frequency=1 major_base=C major_cov=140/132 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=140/132 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=140/132 RA 1889 . NC_000913 4636923 0 T C consensus_score=702.7 frequency=1 major_base=C major_cov=109/90 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=109/90 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=109/90 MC 1890 . NC_000913 66533 70072 0 0 left_inside_cov=0 left_outside_cov=226 right_inside_cov=0 right_outside_cov=249 MC 1891 . NC_000913 363572 365526 0 0 left_inside_cov=137 left_outside_cov=147 right_inside_cov=0 right_outside_cov=265 MC 1892 . NC_000913 1976527 1977302 767 0 left_inside_cov=0 left_outside_cov=178 right_inside_cov=0 right_outside_cov=177 MC 1893 . NC_000913 2031573 2032092 0 0 left_inside_cov=140 left_outside_cov=146 right_inside_cov=140 right_outside_cov=147 MC 1894 . NC_000913 2286969 2288103 1134 0 left_inside_cov=145 left_outside_cov=148 right_inside_cov=145 right_outside_cov=147 MC 1895 . NC_000913 2518987 2519122 38 52 left_inside_cov=145 left_outside_cov=147 right_inside_cov=142 right_outside_cov=146 MC 1896 . NC_000913 2727634 2728925 952 334 left_inside_cov=139 left_outside_cov=148 right_inside_cov=144 right_outside_cov=149 MC 1897 . NC_000913 3421322 3422248 548 368 left_inside_cov=144 left_outside_cov=148 right_inside_cov=143 right_outside_cov=146 MC 1898 . NC_000913 3943583 3943809 123 38 left_inside_cov=141 left_outside_cov=146 right_inside_cov=144 right_outside_cov=147 MC 1899 . NC_000913 4091572 4095032 0 0 left_inside_cov=0 left_outside_cov=244 right_inside_cov=0 right_outside_cov=262 MC 1900 . NC_000913 4474849 4474868 0 0 left_inside_cov=0 left_outside_cov=202 right_inside_cov=0 right_outside_cov=209 JC 1901 . NC_000913 1 1 NC_000913 4639221 -1 0 alignment_overlap=0 circular_chromosome=1 coverage_minus=128 coverage_plus=90 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=91 key=NC_000913__1__1__NC_000913__4639221__-1__0____93__93__0__0 max_left=92 max_left_minus=92 max_left_plus=92 max_min_left=46 max_min_left_minus=46 max_min_left_plus=44 max_min_right=44 max_min_right_minus=44 max_min_right_plus=44 max_pos_hash_score=184 max_right=92 max_right_minus=92 max_right_plus=92 neg_log10_pos_hash_p_value=0.7 new_junction_coverage=0.88 new_junction_read_count=218 polymorphism_frequency=1.000e+00 pos_hash_score=117 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=91 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=218 JC 1902 . NC_000913 66532 -1 NC_000913 70073 1 -27 alignment_overlap=-27 coverage_minus=66 coverage_plus=92 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=64 key=NC_000913__66532__-1__NC_000913__70073__1__-27__CCCGAGACCCGCACGCGTCGACCTGCA__93__93__0__0 max_left=65 max_left_minus=65 max_left_plus=64 max_min_left=32 max_min_left_minus=32 max_min_left_plus=32 max_min_right=33 max_min_right_minus=33 max_min_right_plus=31 max_pos_hash_score=130 max_right=65 max_right_minus=63 max_right_plus=65 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.93 new_junction_read_count=162 polymorphism_frequency=1.000e+00 pos_hash_score=88 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=91 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=158 unique_read_sequence=CCCGAGACCCGCACGCGTCGACCTGCA JC 1903 . NC_000913 269765 1 NC_000913 370983 -1 0 alignment_overlap=0 coverage_minus=127 coverage_plus=116 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=91 key=NC_000913__269765__1__NC_000913__370983__-1__0____93__93__1__0 max_left=91 max_left_minus=91 max_left_plus=91 max_min_left=46 max_min_left_minus=46 max_min_left_plus=46 max_min_right=46 max_min_right_minus=46 max_min_right_plus=45 max_pos_hash_score=184 max_right=92 max_right_minus=91 max_right_plus=92 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=1.01 new_junction_read_count=251 polymorphism_frequency=9.843e-01 pos_hash_score=122 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=4 side_2_redundant=0 total_non_overlap_reads=243 JC 1904 . NC_000913 279335 -1 NC_000913 370982 1 0 alignment_overlap=0 coverage_minus=164 coverage_plus=115 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=91 key=NC_000913__279335__-1__NC_000913__370982__1__0____93__93__1__0 max_left=91 max_left_minus=91 max_left_plus=91 max_min_left=46 max_min_left_minus=46 max_min_left_plus=44 max_min_right=46 max_min_right_minus=46 max_min_right_plus=46 max_pos_hash_score=184 max_right=92 max_right_minus=92 max_right_plus=90 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.16 new_junction_read_count=289 polymorphism_frequency=9.830e-01 pos_hash_score=139 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=5 side_2_redundant=0 total_non_overlap_reads=279 JC 1905 . NC_000913 365527 1 NC_000913 4589230 1 0 alignment_overlap=3 coverage_minus=103 coverage_plus=134 flanking_left=93 flanking_right=93 frequency=7.182e-01 junction_possible_overlap_registers=88 key=NC_000913__365527__1__NC_000913__4589227__1__3____93__93__0__0 max_left=89 max_left_minus=89 max_left_plus=89 max_min_left=44 max_min_left_minus=44 max_min_left_plus=44 max_min_right=45 max_min_right_minus=44 max_min_right_plus=45 max_pos_hash_score=178 max_right=89 max_right_minus=89 max_right_plus=89 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.98 new_junction_read_count=237 polymorphism_frequency=7.182e-01 pos_hash_score=125 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=3 side_1_possible_overlap_registers=91 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.77 side_2_overlap=0 side_2_possible_overlap_registers=88 side_2_read_count=186 side_2_redundant=0 total_non_overlap_reads=237 JC 1906 . NC_000913 957330 -1 NC_000913 957344 -1 0 alignment_overlap=2 coverage_minus=2 coverage_plus=1 flanking_left=93 flanking_right=93 frequency=1.068e-02 junction_possible_overlap_registers=89 key=NC_000913__957330__-1__NC_000913__957346__-1__2____93__93__0__0 max_left=19 max_left_minus=19 max_left_plus=19 max_min_left=19 max_min_left_minus=19 max_min_left_plus=19 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=180 max_right=86 max_right_minus=86 max_right_plus=72 neg_log10_pos_hash_p_value=32.7 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=1.068e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.12 side_1_overlap=2 side_1_possible_overlap_registers=91 side_1_read_count=278 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.17 side_2_overlap=0 side_2_possible_overlap_registers=89 side_2_read_count=284 side_2_redundant=0 total_non_overlap_reads=3 JC 1907 . NC_000913 1207013 1 NC_000913 1208842 1 0 alignment_overlap=16 coverage_minus=60 coverage_plus=82 flanking_left=93 flanking_right=93 frequency=6.869e-01 junction_possible_overlap_registers=75 key=NC_000913__1207013__1__NC_000913__1208826__1__16____93__93__0__0 max_left=76 max_left_minus=75 max_left_plus=76 max_min_left=36 max_min_left_minus=34 max_min_left_plus=36 max_min_right=38 max_min_right_minus=38 max_min_right_plus=38 max_pos_hash_score=152 max_right=76 max_right_minus=74 max_right_plus=76 neg_log10_pos_hash_p_value=1.0 new_junction_coverage=0.69 new_junction_read_count=142 polymorphism_frequency=6.869e-01 pos_hash_score=92 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.24 side_1_overlap=16 side_1_possible_overlap_registers=91 side_1_read_count=60 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.39 side_2_overlap=0 side_2_possible_overlap_registers=75 side_2_read_count=80 side_2_redundant=0 total_non_overlap_reads=142 JC 1908 . NC_000913 1207028 -1 NC_000913 1208825 -1 0 alignment_overlap=16 coverage_minus=70 coverage_plus=72 flanking_left=93 flanking_right=93 frequency=6.869e-01 junction_possible_overlap_registers=75 key=NC_000913__1207028__-1__NC_000913__1208841__-1__16____93__93__0__0 max_left=76 max_left_minus=76 max_left_plus=76 max_min_left=37 max_min_left_minus=37 max_min_left_plus=36 max_min_right=37 max_min_right_minus=35 max_min_right_plus=37 max_pos_hash_score=152 max_right=76 max_right_minus=76 max_right_plus=76 neg_log10_pos_hash_p_value=2.1 new_junction_coverage=0.69 new_junction_read_count=142 polymorphism_frequency=6.869e-01 pos_hash_score=81 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.24 side_1_overlap=16 side_1_possible_overlap_registers=91 side_1_read_count=60 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.39 side_2_overlap=0 side_2_possible_overlap_registers=75 side_2_read_count=80 side_2_redundant=0 total_non_overlap_reads=142 JC 1909 . NC_000913 1976526 -1 NC_000913 1977303 1 0 alignment_overlap=8 coverage_minus=69 coverage_plus=88 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=83 key=NC_000913__1976526__-1__NC_000913__1977295__1__8____93__93__0__0 max_left=84 max_left_minus=84 max_left_plus=84 max_min_left=42 max_min_left_minus=42 max_min_left_plus=42 max_min_right=42 max_min_right_minus=42 max_min_right_plus=40 max_pos_hash_score=168 max_right=83 max_right_minus=83 max_right_plus=83 neg_log10_pos_hash_p_value=2.0 new_junction_coverage=0.69 new_junction_read_count=157 polymorphism_frequency=1.000e+00 pos_hash_score=91 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=91 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=83 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=157 JC 1910 . NC_000913 3156256 -1 NC_000913 3156260 1 0 alignment_overlap=3 coverage_minus=96 coverage_plus=101 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=88 key=NC_000913__3156256__-1__NC_000913__3156257__1__3____93__93__0__0 max_left=89 max_left_minus=87 max_left_plus=89 max_min_left=44 max_min_left_minus=44 max_min_left_plus=44 max_min_right=43 max_min_right_minus=43 max_min_right_plus=43 max_pos_hash_score=178 max_right=89 max_right_minus=89 max_right_plus=89 neg_log10_pos_hash_p_value=1.1 new_junction_coverage=0.82 new_junction_read_count=197 polymorphism_frequency=9.950e-01 pos_hash_score=107 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=3 side_1_possible_overlap_registers=91 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=88 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=197 JC 1911 . NC_000913 3192559 1 NC_000913 3192916 -1 -19 alignment_overlap=-19 coverage_minus=65 coverage_plus=72 flanking_left=93 flanking_right=93 frequency=4.681e-01 junction_possible_overlap_registers=72 key=NC_000913__3192559__1__NC_000913__3192916__-1__-19__ATGTGTTAATGAAACCTTC__93__93__0__0 max_left=73 max_left_minus=66 max_left_plus=73 max_min_left=36 max_min_left_minus=36 max_min_left_plus=36 max_min_right=37 max_min_right_minus=36 max_min_right_plus=37 max_pos_hash_score=146 max_right=73 max_right_minus=71 max_right_plus=73 neg_log10_pos_hash_p_value=1.7 new_junction_coverage=0.80 new_junction_read_count=157 polymorphism_frequency=4.681e-01 pos_hash_score=81 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.86 side_1_overlap=0 side_1_possible_overlap_registers=91 side_1_read_count=214 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.95 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=237 side_2_redundant=0 total_non_overlap_reads=137 unique_read_sequence=ATGTGTTAATGAAACCTTC JC 1912 . NC_000913 3349258 1 NC_000913 3349263 -1 0 alignment_overlap=0 coverage_minus=126 coverage_plus=146 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=91 key=NC_000913__3349258__1__NC_000913__3349263__-1__0____93__93__0__1 max_left=92 max_left_minus=92 max_left_plus=92 max_min_left=46 max_min_left_minus=46 max_min_left_plus=46 max_min_right=46 max_min_right_minus=46 max_min_right_plus=45 max_pos_hash_score=184 max_right=92 max_right_minus=92 max_right_plus=92 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.09 new_junction_read_count=272 polymorphism_frequency=9.379e-01 pos_hash_score=136 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.07 side_1_overlap=0 side_1_possible_overlap_registers=91 side_1_read_count=18 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=272 JC 1913 . NC_000913 3754317 -1 NC_000913 3754318 1 -3 alignment_overlap=-3 coverage_minus=128 coverage_plus=134 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=88 key=NC_000913__3754317__-1__NC_000913__3754318__1__-3__GCG__93__93__0__0 max_left=89 max_left_minus=88 max_left_plus=89 max_min_left=44 max_min_left_minus=44 max_min_left_plus=44 max_min_right=45 max_min_right_minus=44 max_min_right_plus=45 max_pos_hash_score=178 max_right=89 max_right_minus=89 max_right_plus=87 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.11 new_junction_read_count=267 polymorphism_frequency=1.000e+00 pos_hash_score=128 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=91 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=262 unique_read_sequence=GCG JC 1914 . NC_000913 3938584 -1 NC_000913 3938585 1 -3 alignment_overlap=-3 coverage_minus=132 coverage_plus=150 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=88 key=NC_000913__3938584__-1__NC_000913__3938585__1__-3__TGC__93__93__0__0 max_left=89 max_left_minus=89 max_left_plus=89 max_min_left=44 max_min_left_minus=44 max_min_left_plus=44 max_min_right=45 max_min_right_minus=45 max_min_right_plus=45 max_pos_hash_score=172 max_right=89 max_right_minus=89 max_right_plus=89 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.17 new_junction_read_count=282 polymorphism_frequency=1.000e+00 pos_hash_score=136 prediction=consensus side_1_annotate_key=gene side_1_continuation=3 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=88 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=282 unique_read_sequence=TGC JC 1915 . NC_000913 3968317 -1 NC_000913 3968318 1 -3 alignment_overlap=-3 coverage_minus=136 coverage_plus=135 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=88 key=NC_000913__3968317__-1__NC_000913__3968318__1__-3__CGT__93__93__0__0 max_left=89 max_left_minus=88 max_left_plus=89 max_min_left=44 max_min_left_minus=44 max_min_left_plus=43 max_min_right=45 max_min_right_minus=45 max_min_right_plus=45 max_pos_hash_score=178 max_right=89 max_right_minus=89 max_right_plus=89 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.13 new_junction_read_count=271 polymorphism_frequency=1.000e+00 pos_hash_score=131 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=91 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=271 unique_read_sequence=CGT JC 1916 . NC_000913 4008398 -1 NC_000913 4008399 1 -4 alignment_overlap=-4 coverage_minus=28 coverage_plus=15 flanking_left=93 flanking_right=93 frequency=4.268e-01 junction_possible_overlap_registers=87 key=NC_000913__4008398__-1__NC_000913__4008399__1__-4__AAGA__93__93__0__0 max_left=86 max_left_minus=86 max_left_plus=84 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=23 max_min_right_minus=23 max_min_right_plus=23 max_pos_hash_score=172 max_right=23 max_right_minus=23 max_right_plus=23 neg_log10_pos_hash_p_value=17.5 new_junction_coverage=0.23 new_junction_read_count=54 polymorphism_frequency=4.268e-01 pos_hash_score=26 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=2 side_1_coverage=0.31 side_1_overlap=0 side_1_possible_overlap_registers=89 side_1_read_count=75 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.30 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=75 side_2_redundant=0 total_non_overlap_reads=43 unique_read_sequence=AAGA JC 1917 . NC_000913 4091571 -1 NC_000913 4095033 1 -29 alignment_overlap=-29 coverage_minus=88 coverage_plus=80 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=62 key=NC_000913__4091571__-1__NC_000913__4095033__1__-29__GCATGCGGATCCTCTAGAGTCGACATATG__93__93__0__0 max_left=63 max_left_minus=62 max_left_plus=63 max_min_left=31 max_min_left_minus=31 max_min_left_plus=31 max_min_right=32 max_min_right_minus=32 max_min_right_plus=32 max_pos_hash_score=126 max_right=63 max_right_minus=63 max_right_plus=62 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.99 new_junction_read_count=168 polymorphism_frequency=1.000e+00 pos_hash_score=86 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=91 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=168 unique_read_sequence=GCATGCGGATCCTCTAGAGTCGACATATG JC 1918 . NC_000913 4474848 -1 NC_000913 4474869 1 -30 alignment_overlap=-30 coverage_minus=82 coverage_plus=61 flanking_left=93 flanking_right=93 frequency=1 junction_possible_overlap_registers=61 key=NC_000913__4474848__-1__NC_000913__4474869__1__-30__GTATTTCCCGGCATCTTTATAGCGATAGCA__93__93__0__0 max_left=61 max_left_minus=60 max_left_plus=61 max_min_left=30 max_min_left_minus=30 max_min_left_plus=25 max_min_right=31 max_min_right_minus=30 max_min_right_plus=31 max_pos_hash_score=124 max_right=62 max_right_minus=62 max_right_plus=62 neg_log10_pos_hash_p_value=0.8 new_junction_coverage=0.88 new_junction_read_count=147 polymorphism_frequency=1.000e+00 pos_hash_score=77 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=91 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=91 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=143 unique_read_sequence=GTATTTCCCGGCATCTTTATAGCGATAGCA JC 1919 . NC_000913 4540250 1 NC_000913 4540564 1 0 alignment_overlap=9 coverage_minus=12 coverage_plus=7 flanking_left=93 flanking_right=93 frequency=1.497e-01 junction_possible_overlap_registers=82 key=NC_000913__4540250__1__NC_000913__4540555__1__9____93__93__0__0 max_left=77 max_left_minus=73 max_left_plus=77 max_min_left=40 max_min_left_minus=40 max_min_left_plus=37 max_min_right=41 max_min_right_minus=41 max_min_right_plus=16 max_pos_hash_score=166 max_right=80 max_right_minus=80 max_right_plus=73 neg_log10_pos_hash_p_value=21.1 new_junction_coverage=0.08 new_junction_read_count=19 polymorphism_frequency=1.497e-01 pos_hash_score=17 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.29 side_1_overlap=9 side_1_possible_overlap_registers=91 side_1_read_count=73 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.67 side_2_overlap=0 side_2_possible_overlap_registers=82 side_2_read_count=150 side_2_redundant=0 total_non_overlap_reads=19 JC 1920 . NC_000913 4540258 -1 NC_000913 4540554 -1 0 alignment_overlap=9 coverage_minus=4 coverage_plus=7 flanking_left=93 flanking_right=93 frequency=9.183e-02 junction_possible_overlap_registers=82 key=NC_000913__4540258__-1__NC_000913__4540563__-1__9____93__93__0__0 max_left=77 max_left_minus=77 max_left_plus=74 max_min_left=36 max_min_left_minus=36 max_min_left_plus=28 max_min_right=38 max_min_right_minus=7 max_min_right_plus=38 max_pos_hash_score=166 max_right=70 max_right_minus=68 max_right_plus=70 neg_log10_pos_hash_p_value=24.7 new_junction_coverage=0.05 new_junction_read_count=11 polymorphism_frequency=9.183e-02 pos_hash_score=11 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.30 side_1_overlap=9 side_1_possible_overlap_registers=91 side_1_read_count=75 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.67 side_2_overlap=0 side_2_possible_overlap_registers=82 side_2_read_count=150 side_2_redundant=0 total_non_overlap_reads=11 UN 1921 . NC_000913 15478 16643 UN 1922 . NC_000913 19885 20474 UN 1923 . NC_000913 66533 70072 UN 1924 . NC_000913 223629 223651 UN 1925 . NC_000913 223833 224681 UN 1926 . NC_000913 224981 225497 UN 1927 . NC_000913 225824 225931 UN 1928 . NC_000913 226113 226210 UN 1929 . NC_000913 226392 226514 UN 1930 . NC_000913 226695 226877 UN 1931 . NC_000913 227077 228599 UN 1932 . NC_000913 228775 228918 UN 1933 . NC_000913 269852 270429 UN 1934 . NC_000913 270431 270433 UN 1935 . NC_000913 270697 270721 UN 1936 . NC_000913 273270 274284 UN 1937 . NC_000913 278477 279074 UN 1938 . NC_000913 279245 279246 UN 1939 . NC_000913 289749 289768 UN 1940 . NC_000913 289946 290538 UN 1941 . NC_000913 314539 315621 UN 1942 . NC_000913 363612 365526 UN 1943 . NC_000913 380567 381727 UN 1944 . NC_000913 391019 392108 UN 1945 . NC_000913 525185 525855 UN 1946 . NC_000913 566082 566082 UN 1947 . NC_000913 566084 567171 UN 1948 . NC_000913 573898 574924 UN 1949 . NC_000913 580430 580495 UN 1950 . 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NC_000913 2727678 2728882 UN 2006 . NC_000913 2729189 2729312 UN 2007 . NC_000913 2757999 2758020 UN 2008 . NC_000913 2882410 2882419 UN 2009 . NC_000913 2901834 2901845 UN 2010 . NC_000913 2993220 2993220 UN 2011 . NC_000913 2994470 2995630 UN 2012 . NC_000913 3128242 3129272 UN 2013 . NC_000913 3156257 3156259 UN 2014 . NC_000913 3184201 3185355 UN 2015 . NC_000913 3192669 3192669 UN 2016 . NC_000913 3363275 3364301 UN 2017 . NC_000913 3421385 3422198 UN 2018 . NC_000913 3422375 3426103 UN 2019 . NC_000913 3426283 3426542 UN 2020 . NC_000913 3467884 3468281 UN 2021 . NC_000913 3468461 3468584 UN 2022 . NC_000913 3581146 3581742 UN 2023 . NC_000913 3616993 3618631 UN 2024 . NC_000913 3618806 3619844 UN 2025 . NC_000913 3620143 3620201 UN 2026 . NC_000913 3622450 3622510 UN 2027 . NC_000913 3622515 3622515 UN 2028 . NC_000913 3623010 3623019 UN 2029 . NC_000913 3649750 3650777 UN 2030 . NC_000913 3663923 3663943 UN 2031 . NC_000913 3664124 3664420 UN 2032 . 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