BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,292,982	0	A	G	45.5%	107.6 / inf	325	noncoding (55/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (53/115); new base G (73/67); total (137/188)
Fisher's exact test for biased strand distribution p-value = 3.03e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.48e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 329 total aligned reads displayed.

CCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCT  >  NZ_CP025268/1292843‑1293118

cccGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGa                                                                                                                                          >  2:9830330/1‑140 (MQ=255)

cccGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCGTCTCCCTTCGGGTCGTTGCCTGAGGCAACGCTCTCTCGCTGa                                                                                                                                          >  1:8655518/1‑140 (MQ=14)

cccGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATGCCGGGGCTTTTGAAAGTGATGGGGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCGTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGa                                                                                                                                          >  2:9560302/1‑140 (MQ=14)

    cttGGGCAGATTATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                                                                                                                      <  2:11216696/138‑1 (MQ=255)

    cttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                                                                                                                      <  1:3126076/138‑1 (MQ=255)

        ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAGTCAGCGCTGAGCCCTTCTCCCATCGGGTCGTTGCATCCGGCAACGATCTCTCGCTTACGCACGaa                                                                                                                                  >  2:7433627/1‑139 (MQ=14)

        ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAg                                                                                                                                  <  1:10297882/140‑1 (MQ=255)

         gCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGc                                                                                                                                 <  1:6634663/140‑1 (MQ=255)

          cAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGAGTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGcc                                                                                                                                <  1:92416/140‑1 (MQ=255)

           agatttttttATTGCGGATTAGTTTGAGTATTCCGGGGCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                               <  2:841966/134‑1 (MQ=14)

           aGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                               <  2:8198631/140‑1 (MQ=255)

             aaTATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCACCGATCTCTCGCTGTCGCTCGAAACGaa                                                                                                                             >  2:10460628/1‑140 (MQ=14)

                  ttGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCttt                                                                                                                        >  1:6858098/1‑139 (MQ=255)

                   tGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCGGACGCTCGAGAAGAACCATag                                                                                                                       >  1:4717008/1‑139 (MQ=14)

                    taTTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAACGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTagt                                                                                                                      <  2:3383237/139‑3 (MQ=255)

                     aTTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTc                                                                                                                     <  2:10048794/140‑1 (MQ=255)

                       tGCGGATTCGTTTGAGTATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                   <  2:3296778/140‑1 (MQ=255)

                       tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGNAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCTCGCAGACGCTCGATCCGAACCTTAGTCGa                                                                                                                   >  1:10770142/1‑140 (MQ=14)

                       tGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCTCCCTTCGGGTCGTTGGCTGGCGCAACGAAATCTCGCAGTCGCACGAATAGAACCTTaggcga                                                                                                                   >  1:14653/1‑135 (MQ=11)

                       agCGGATTCGTTTGAGAATTCCGGTCCTTTTGAAAGTCAAGGTGGTGGTGGAAGGATTACTCAGCGCTGCGCGCTTAGCCCTTCTGGTCGTTTCCTTCCACAACGCACTCAACCTGACGCACGACACGAACCGTAGTCGa                                                                                                                   >  2:290/2‑140 (MQ=9)

                        gCGGATTCGTTTGAGAATTCGGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                  <  2:4413569/140‑1 (MQ=255)

                        gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                  <  2:4810638/140‑1 (MQ=255)

                         cGGATTCGTTTGAGAATTCCNGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTNACTCGCTNTCGCTCGAGCCGAAACTTAGTCGAAg                                                                                                                 >  1:6106730/1‑140 (MQ=14)

                         cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCACCGTTCTCTCGCTTTCGCTCGAATCGAACCGTAGTCGAAg                                                                                                                 >  2:4270370/1‑140 (MQ=14)

                         cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGAGCCCTTCGCCCTTCGGGTCGTTGCCTGCTGCAACCCTCTCTCGCTGACGCACGTGGCGAACCTTTGTCGAAg                                                                                                                 >  2:2101565/1‑140 (MQ=14)

                           gATTCGTTTGAGCATTCGGGGGCTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCt                                                                                                               <  2:5341255/140‑1 (MQ=14)

                           gATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGGCGAACCTTAGTCGAAGCt                                                                                                               >  2:6872489/1‑140 (MQ=255)

                           gATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCt                                                                                                               <  1:10829036/140‑1 (MQ=255)

                           gATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCt                                                                                                               >  2:3774960/1‑140 (MQ=255)

                              tCGTTTGAGTATTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtct                                                                                                            <  1:10685066/140‑1 (MQ=255)

                                   tGAGTATTCCTGTGATTATGTAAGAGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATcc                                                                                                       <  1:5851922/140‑1 (MQ=11)

                                     agaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCACGAGACGAACCATAGTCGAAGCTTCTCATCCtt                                                                                                     >  1:2834774/1‑140 (MQ=255)

                                      gacttCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                    <  2:9379144/137‑1 (MQ=255)

                                                gcatatGAAACAGATGGTGGTGCGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                          <  2:7555014/135‑1 (MQ=11)

                                                gattttGTAAGTGAGGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                          <  1:7036420/138‑1 (MQ=255)

                                                gattttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                          <  2:4130548/138‑1 (MQ=17)

                                                gCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                          <  2:4150171/140‑1 (MQ=18)

                                                gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                          <  2:10668499/140‑1 (MQ=18)

                                                gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                          <  2:10318955/140‑1 (MQ=18)

                                                 cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGc                                                                                         >  2:7724304/1‑140 (MQ=17)

                                                  ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                        <  1:2228771/140‑1 (MQ=17)

                                                  ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                        <  1:2440740/140‑1 (MQ=17)

                                                  ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                        <  1:5209429/140‑1 (MQ=17)

                                                  ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                        <  1:3429277/140‑1 (MQ=17)

                                                    ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                      <  1:4168462/140‑1 (MQ=17)

                                                           tGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCAGACGCTAGAGTCGAACCTTGGTCGATGCTTCTCCTCAGTACCCGCATGGGCAGAATATTTa                                                                               >  2:7953844/1‑140 (MQ=11)

                                                            gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAtttga                                                                              <  1:4075916/140‑3 (MQ=11)

                                                                        ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGt                                                                  >  2:121726/1‑140 (MQ=11)

                                                                        ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCGTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGt                                                                  >  2:10712567/1‑140 (MQ=11)

                                                                           aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCATTCGCTCGAGTCGAACCTTTGTCGAAGCTTCTAATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGtttg                                                               >  2:80855/1‑138 (MQ=11)

                                                                           aGGATTACTAAGATCTTCGAGCTTCGCCCTTCTTGTAGTTTCATGACGCAACGCACTCTCGCTTGCCCAAGACTCGAACCTATTAAGAAGATACTCATCCTACCCAGAATGGTCAGAATATTTAATTGCGGATGCGATgg                                                               >  2:1599214/1‑140 (MQ=255)

                                                                             gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                             <  1:3848529/140‑1 (MQ=255)

                                                                             gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                             <  1:1751789/140‑1 (MQ=255)

                                                                             gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                        >  2:1922855/1‑113 (MQ=12)

                                                                                  cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTc                                                        <  1:3237139/140‑1 (MQ=14)

                                                                                  cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCAGAATTTTTAATTGCGGCTTCGTTGGGAAGGTc                                                        >  2:8182003/1‑140 (MQ=11)

                                                                                     aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAAAGCTCACACGCTGGCGCTCGAGTCGAACCTTGGTAGAAGCTTCTAAACCTTCCCCGCAGGGGCAGAAGATTTAATTGCGGGTTAGTTGGGAAGTTCAgg                                                     >  1:11020237/1‑140 (MQ=14)

                                                                                       cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACATTCCCCGCAAGGGCAGAATATTTAATTTCGGATTCGTTGGGACGTTGCGGGa                                                   >  2:5615448/1‑140 (MQ=11)

                                                                                       cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTACTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGCTTCGATGGGCCGGTCAgggc                                                   >  2:8773278/1‑139 (MQ=11)

                                                                                       cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGACGCTCGAGGCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCCCAAGGGCAGAATATTTTATTGCGGATTAGTTGGGTAGTTCAGGGa                                                   >  1:11406445/1‑140 (MQ=14)

                                                                                       cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCGGGCGCGCGAGTCGAACCGTGGTCGAAGCTTCTCATCCGTCCCCGCCGGGGGAGAATATTTAATTGCGGATTCGGTGGGGAGTTGAGGGa                                                   >  1:10060461/1‑140 (MQ=11)

                                                                                        gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGAc                                                  <  2:6360171/140‑1 (MQ=255)

                                                                                        gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTAGTTGGGTAGTTAAGGGAc                                                  >  2:6692278/1‑140 (MQ=14)

                                                                                            cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                              >  2:10625069/1‑140 (MQ=255)

                                                                                            cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGATTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                              >  2:2690858/1‑140 (MQ=14)

                                                                                            cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAGATTTACTTGCGGAGTGGGTGGGACGGTCAGGGAcggtt                                              >  2:1474919/1‑136 (MQ=11)

                                                                                            cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                              >  2:5164162/1‑140 (MQ=255)

                                                                                            cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGGCGAAGCTTCTCATCCATCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                              >  2:7233098/1‑140 (MQ=14)

                                                                                            cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCTGGCGCTCGCGTGGAACCTTGGTCGAAGCTTCTCATCCTTGCCCGCATGGGGAGAATATTTAATTGCGGTTTCGTTGGGGAGTTCAtggcggttt                                              >  1:3886102/1‑134 (MQ=11)

                                                                                               gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                           <  2:6106730/140‑1 (MQ=255)

                                                                                               gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                           <  1:838493/140‑1 (MQ=255)

                                                                                               gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                           <  2:11507795/140‑1 (MQ=255)

                                                                                               gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                           <  1:121726/140‑1 (MQ=14)

                                                                                                 ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAg                                         <  1:4848119/140‑1 (MQ=14)

                                                                                                 ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAg                                         >  2:644799/1‑140 (MQ=255)

                                                                                                    gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                      <  2:10164785‑M1/140‑1 (MQ=255)

                                                                                                    gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCACCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTAAGGGGCTGTTGAAtgtgg                                      >  2:4010492/1‑139 (MQ=14)

                                                                                                     cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAT                                     <  1:8898775‑M1/140‑1 (MQ=255)

                                                                                                     cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAT                                     <  2:2576181‑M1/140‑1 (MQ=255)

                                                                                                      ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                                    <  1:5665672‑M1/140‑1 (MQ=255)

                                                                                                      ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                                    <  1:10003441‑M1/140‑1 (MQ=255)

                                                                                                      ccTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGATTATTTAATTGCGGATTCGTTGGGTATTTCAGGGACTTTTGAAAGTGATG                                    <  1:9840491‑M1/140‑1 (MQ=255)

                                                                                                        ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGGACCGTGGTCGAAGCTTCTCATCCATCCCCCCATGGGCCGAATATTTAATTTCGGATTAGTTGGGTAGTTCAGGGGCGTTTGTAAGTGAtggt                                  >  1:10502129/1‑140 (MQ=11)

                                                                                                        gccGGGTCGGTGCCTGCGTCAACGCTCTCTCTCTGGAGCGAGAGTAGATCATAAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAtggt                                  <  2:10586580/138‑1 (MQ=11)

                                                                                                                gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAACTTGGTCGAAGCTTCTCAACCTTACCCGCAAGGGCAGAATATTTAATTGCGGATTCGGTGGGAAGTTAAGGGACAGTTGAAAGTTTTTGTGGTggggg                          >  1:9383216/1‑140 (MQ=11)

                                                                                                                 gggccGGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTAGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                         <  1:4258250‑M1/138‑1 (MQ=255)

                                                                                                                  tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAA                        <  2:11020237‑M1/140‑1 (MQ=255)

                                                                                                                         ggCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcg                 <  1:7953844‑M1/140‑3 (MQ=255)

                                                                                                                          gctacgcACTCTCGCTTGCGCTCGTGTCGAACATTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga                <  1:6577722‑M1/137‑4 (MQ=255)

                                                                                                                          gCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGTTTcga                <  2:2241901‑M1/140‑4 (MQ=255)

                                                                                                                           cAACGCTCTCTCGCTGCCGCTCGAGACGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGATTGTAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa               <  1:5568764‑M1/140‑5 (MQ=255)

                                                                                                                                ctctctCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccgtc          >  2:8823801‑M1/1‑131 (MQ=255)

                                                                                                                                 tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg         <  1:8982176‑M1/140‑11 (MQ=255)

                                                                                                                                   tctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAAGTGCGGATTCGTTGGGAAGTTCAGGGACTTGTGAAAGTGAGGGTGGTGGGGGAAGGATTcgaaccttcgaa       >  1:7386787‑M1/1‑128 (MQ=255)

                                                                                                                                    ctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaag      <  1:4419598‑M1/140‑14 (MQ=255)

                                                                                                                                     tcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagt     >  2:3564223‑M1/1‑126 (MQ=255)

                                                                                                                                        cTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAATTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcga  >  2:706386‑M1/1‑123 (MQ=255)

                                                                                                                                        cTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTG                                 <  2:5027239‑M1/109‑1 (MQ=255)

                                                                                                                                        cTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTG                                 >  1:5027239‑M1/1‑109 (MQ=255)

                                                                                                                                        cTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcga  >  2:10957942‑M1/1‑123 (MQ=255)

CCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCT  >  NZ_CP025268/1292843‑1293118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`