Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,233,2250TA26.7% 280.1 / 57.9 195intergenic (+125/+248)yohP/dusCsmall membrane protein YohP/tRNA dihydrouridine(16) synthase DusC
Reads supporting (aligned to +/- strand):  ref base T (70/70);  new base A (51/0);  total (123/72)
Fisher's exact test for biased strand distribution p-value = 5.54e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 197 total aligned reads displayed.

GATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGG  >  NZ_CP025268/2233088‑2233364
                                                                                                                                           |                                                                                                                                             
gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCCCTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATcg                                                                                                                                             >  2:8428279/1‑140 (MQ=255)
     tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATcgccgcc                                                                                                                                        <  2:824242/140‑1 (MQ=255)
     tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATcgccgcc                                                                                                                                        <  2:8916485/140‑1 (MQ=255)
      atTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATcgccgccg                                                                                                                                       <  1:615985/140‑1 (MQ=255)
        tttAAAATTAATTAATGTCATCAGGTCCGACAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCgccgccgcc                                                                                                                                     <  2:10228800/140‑1 (MQ=255)
        tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCgccgccgcc                                                                                                                                     <  1:5656859/140‑1 (MQ=255)
        tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCgccgccccc                                                                                                                                     >  2:8373585/1‑140 (MQ=255)
        tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCCCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCgccgccgcc                                                                                                                                     <  2:1760280/140‑1 (MQ=255)
          tAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGcccc                                                                                                                                   <  1:8753775/140‑1 (MQ=255)
            aaaTTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGTGGGGGGGG‑GCCCTCgcccccgcccccg                                                                                                                                 >  1:9333727/1‑139 (MQ=38)
             aattaattAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTg                                                                                                                                <  1:2797353/140‑1 (MQ=255)
             aattaattAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTg                                                                                                                                <  2:2277390/140‑1 (MQ=255)
                           atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCCGGGGGGGGCCCGACCCCCCCCCCCCCCCCCACCCCCggcgg                                                                                                                    >  1:5300661/1‑137 (MQ=255)
                           atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGAGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGctc‑t                                                                                                                 >  1:7899558/1‑140 (MQ=255)
                                gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGCGG‑CCCAAAGCCGCCGCCCCCAGCACCCCCCGGCTC‑AGGCGa                                                                                                            >  2:4434983/1‑140 (MQ=25)
                                gTCCGAAAATAACGAGAATATTTCAGTCTCTCAGCCTGTTGCGCTCCTGTCATGGGCCTTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCATCGCCGCCGCCCCCAGCACCCCCGGGCTC‑GGGCgc                                                                                                            >  2:10121092/1‑139 (MQ=25)
                                 tCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTA‑TGGCGaa                                                                                                           >  2:10203495/1‑140 (MQ=255)
                                   cGAAAATAACGAGACTATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCTC‑TGGCGAACa                                                                                                         >  2:11093095/1‑140 (MQ=255)
                                   cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCTGGGGCGG‑CCCATAGCCGCCGCCCCCAGCACCCCCCGGCGC‑TGGCGAAcc                                                                                                         >  2:2650771/1‑139 (MQ=25)
                                   cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑AGGCGAACa                                                                                                         >  2:6704944/1‑140 (MQ=255)
                                   cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACa                                                                                                         >  2:5943222/1‑140 (MQ=255)
                                   cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACa                                                                                                         >  2:5944222/1‑140 (MQ=255)
                                     aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGACGGGGGGG‑CCCATCGCCGCCGCCCCCAGCCCCCCCCGGCGC‑TGGccgccaaa                                                                                                       >  1:634605/1‑133 (MQ=255)
                                          aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGG‑GCAATAGCCCCCGCCCCCAGCACCCCCGGGCTA‑AGGCGAACaaaaaagc                                                                                                  >  2:8123088/1‑136 (MQ=25)
                                          aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATagc                                                                                                  >  2:7803286/1‑140 (MQ=255)
                                               gactatTTCAGTCTCTCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGCGG‑CCAATCGCCCCCGCCCCCAGCCCCCCCCGGCAC‑TGGCGAACAAAATCGCCGCTg                                                                                             >  2:6258960/4‑140 (MQ=21)
                                                   atTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGcgcg                                                                                         <  2:559761/140‑1 (MQ=255)
                                                   atTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGcgcg                                                                                         <  1:10684746/140‑1 (MQ=255)
                                                     ttCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAACGCCGCCGCCCCCTGCACCCCCCGGCTC‑TGGCGCACCAAAACGCCGCAGCGCGGt                                                                                       >  2:8964760/1‑140 (MQ=18)
                                                      tCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTg                                                                                      <  2:8899338/140‑1 (MQ=255)
                                                        aGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGcc                                                                                    <  1:9249726/140‑1 (MQ=255)
                                                        aGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGcc                                                                                    <  1:9250177/140‑1 (MQ=255)
                                                         gTCTCTCCTCCTGTGTCGCTCCGGTCATGTGCATTGCTTCATATCATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGGGccc                                                                                   <  2:479900/140‑1 (MQ=18)
                                                         gTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCTTATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGccc                                                                                   <  1:5493636/140‑1 (MQ=255)
                                                          tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCCGGCGC‑TGGCGAACAAAATAGCCCCTGCCCGGTGccca                                                                                  >  2:10654269/1‑139 (MQ=18)
                                                          tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCACGGGGCGG‑CCCAAAGCCCCCCCCCCCACCACCCCCCCGCGC‑ATGCCAACAAAAAAACCCCAGCGCGGTGccca                                                                                  >  2:4334754/1‑139 (MQ=16)
                                                            tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGG‑GCAAACGCCGCCGCCCCCTGCACCCCCGCGCGC‑TTGCGAACAAAATCGCCGCGGCGCGGTGCCCACg                                                                                >  2:7130509/1‑140 (MQ=18)
                                                            tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCATAGCCGCCGCCCCCAGCACCCCCCGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCg                                                                                >  2:6421409/1‑140 (MQ=255)
                                                            tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCACGGGGCGG‑CCAAAAGCCCCCCCCCCCCGCACCCCCCGGCAA‑TGGCGAACAAAAACGCCCCAGCGCGGTGcccacc                                                                                >  2:296679/1‑137 (MQ=18)
                                                            tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAAGGGGCGG‑CCAAAAGCCGCCCCCCCCAACACCCCCCGGCTA‑ATGCGAAAAAAAACACCCCAGCACGGTTCCCACg                                                                                >  2:3699297/1‑140 (MQ=16)
                                                              tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAAAGCCCCCCCCCCCCGCACCCCCCCGCAA‑ATGCCAAAAAAAAAACCCCAGCGCGGTGCCCACGGc                                                                              >  1:1814005/1‑140 (MQ=16)
                                                              tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATAGCCGCCGCCCCCAGCACCCCCCGGCTC‑TGGCGAACAAAATCGCCCCTGCGCGGTGCCCACGGc                                                                              >  2:9441649/1‑140 (MQ=18)
                                                              tcATCCTCTTGCGCCCCTGTCATGTGCATTGCGTCAGAGAAGCACTGGCGCCAGGAGCGC‑GCCCGGGGCGG‑CCAATCGCCGCCGGCCCCAGCCCCCCCCCGCTC‑GGGCGAACAAAAGCGCCGCTGCGCGGTGCCCGCggg                                                                              >  2:789209/1‑139 (MQ=17)
                                                               cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGGGG‑GCAAAACCCCCCGCCCCCACCACCCCCCCGCAC‑AGGCGAACAAAAAAGCCCCAGCCCGGTGCCCACGGcg                                                                             >  2:4158043/1‑139 (MQ=16)
                                                               cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt                                                                             <  1:4385335/140‑1 (MQ=255)
                                                               cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCATGGGGCGG‑CCCAACGCCCCCCCCCCCAGCACCCCCCCGCGC‑ATGCGAACAAAAAAACCCCAGCGCCGTGcccaacgct                                                                             >  2:4158171/1‑134 (MQ=16)
                                                                 tCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGCGCGC‑GCTGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa                                                                           <  1:7961267/140‑1 (MQ=255)
                                                                 tCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa                                                                           <  1:1953430/140‑1 (MQ=255)
                                                                      ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGG‑CCCATAGCCGCCCCCCCCCGCACCCCCCGGCTC‑AGGCGAACAAAAAAGCCCCGGCGCGGTGCCCACGGCGTaaacca                                                                      >  2:2143302/1‑135 (MQ=18)
                                                                      ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCt                                                                     >  2:10641688/1‑140 (MQ=255)
                                                                      ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCAATCACCACCCGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCGCTCGGCTTTT‑CCCt                                                                     >  2:8606772/1‑140 (MQ=18)
                                                                        gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGGGG‑CCCAAACCCCCCCCCCCCCGCACCCCCCCGCGC‑AGGGGAAAAAAAAAACCCCAGAGCGGGGGCCCCGGCTTAT‑ACCCTa                                                                   >  1:11412340/1‑140 (MQ=255)
                                                                        gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGG‑GCAAACGCCGCCGCCCCCAGCCCCCCCGGGCGC‑TGGCGAACAAAATCGCCGCGGCCCGGTGCCCCCGGCAGAT‑cccaga                                                                   >  2:1845843/1‑137 (MQ=18)
                                                                        gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATACCCGCCGCCCCCCGCACCCCCCGGCTC‑AGGCGAACAAAAACGCCGCAGCGCGGTGCCCGCCGCATAT‑accaaa                                                                   >  1:9809352/1‑137 (MQ=17)
                                                                         cgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTAc                                                                  <  1:4907113/140‑1 (MQ=255)
                                                                          gcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCGC‑TGGCGAACAAAATCGCCGCGGCGCGGTGCCCTCGGCGTAT‑CCCTGACg                                                                 >  2:1922458/1‑140 (MQ=18)
                                                                           cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCGGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACACAATCGCCGCGGCGCGGTGCCCTCGGCGTAT‑CCCTTACgg                                                                >  2:7499885/1‑140 (MQ=255)
                                                                              cTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGCGG‑CCCAACGCCGCCCCCCCCCGCACCCCCCGGCGC‑AGGCGAACAAAAACACCGCGGCGCGGGGCCCACGGCGTAT‑ACCAAAAGGCTa                                                             >  2:1341783/1‑140 (MQ=12)
                                                                                gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCGC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTAcc                                                           >  2:11614813/1‑140 (MQ=255)
                                                                                gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATAGCCGCCGCCCCCAGCACCCCCCGGCGA‑GGGCGCACAAAAACGCCGCGGCGCGGGGCCCGCGGCGTTT‑CCCATACGGcgaac                                                           >  2:10814906/1‑136 (MQ=17)
                                                                                   aTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCCCCGCCCCCCGCACCCCCGGGCTC‑AGGCGAACAAAATCGCCCCTGCGCGGTGCCCACGGCGTAT‑CCCATACGGCGACCggg                                                        >  2:971891/1‑140 (MQ=17)
                                                                                      tgCATTGCTTCATATCATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCGTAT‑CACTAACGGCTACCGAGTCg                                                     >  2:7682087/1‑140 (MQ=14)
                                                                                      tgCATTGCTTCATATACTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCGCGGCTTAT‑CCCTTACGGCTACCGGGTCg                                                     >  2:7625390/1‑140 (MQ=255)
                                                                                      tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCTC‑AGGCGAACCAAATCGCCGCTGCGCGGTGCCCACGGCGTTT‑CCCTTACGGCGACCGGGGCg                                                     >  2:11526937/1‑140 (MQ=14)
                                                                                      tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCCCCCCCAGCACCCCCCGGCTC‑ATGCGAACAAAATCGCCGCTGCGCGGTGCCCACCGCTTAT‑ACCTTACGGCTACCCGGTCg                                                     >  2:11305922/1‑140 (MQ=14)
                                                                                        cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGGGG‑GCCAACGCCGCCGCCCCCAGCACACCCCGGCGCATGGGGAA‑AAAATAACCGCAGCGCGGTGGCCGCCGCTTTA‑ACCATACGGCGAACCGGTCggg                                                   >  2:5345749/1‑140 (MQ=255)
                                                                                        cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGACGG‑CCCAACGCCGCCGCCCCCAGCACCCCCCGGCTC‑AGGCGAACAAAAACGCCGCAGCGCGGTGCCCACCGCTTAT‑ACCCTACCGCAACCGCGTCggg                                                   >  2:10817851/1‑140 (MQ=14)
                                                                                          ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGGCGCCCCCTGCACCCCCGGGCGC‑TGGCGAACAAAATCGCCGCTGGGCGGTGGCCTCGGCTGAT‑CCCTTACGGCTACCGGGTCGGgcg                                                 >  2:10950737/1‑140 (MQ=14)
                                                                                          ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGgcg                                                 <  1:639762/140‑1 (MQ=255)
                                                                                           tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAACCCGCCCCCCCCAGCCCCCCCCGGCAC‑ATGCGAAAAAAAAAGCCCCAGCGCCGTGCCCACCGCGTAA‑CCCATAACGCAACCCGGTCGGgcgc                                                >  2:5562345/1‑140 (MQ=9)
                                                                                           tGCCTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCCCCGCCCCCCGCACCCCCGGGCTA‑TTGCGAACAAAAGACCCCCGTGGCGGTGCCCGCGGCGTAA‑ACCTTACGGCAACCCGGTCGGgcgc                                                >  2:5562358/1‑140 (MQ=9)
                                                                                            gCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAACTCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGcgcg                                               <  2:8043521/140‑1 (MQ=255)
                                                                                              ttCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAg                                             >  2:6896798/1‑140 (MQ=40)
                                                                                                 atatAATCACTGGCGCCAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTa                                          <  1:4333327/140‑1 (MQ=38)
                                                                                                    taATCACGGGCGCACGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGACCAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                       <  1:157321/140‑1 (MQ=255)
                                                                                                     aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                      <  2:611363/140‑1 (MQ=34)
                                                                                                     aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                      <  2:3843397/140‑1 (MQ=34)
                                                                                                       tCACTGGCGCAAGGAGCGCGGCGGGGGGGGG‑CCAA‑CGCCGCCCCCCCCCGCCCCCCCCGGCGC‑TGGCGAAAAAAAACGCCGCGGCGCCGGGGCCACGGCGTAT‑CCCATAACGCGACCCGGTAGGGCGCCCGGGAACaaac                                    >  2:7976637/1‑137 (MQ=255)
                                                                                                       tCACTGGCGCAAGGAGCGC‑GCCGGGGGCGG‑CCCATCGCCGCCGCCCCCCGCACCCCCCGGGGC‑TGGGGAACAAAATAGCCGCTGGGCGGTGCCCTCGGCGTAT‑CCCGTAACGCGACCCGGGCGGGCGCGAGGGAAccacc                                    >  2:573407/1‑136 (MQ=2)
                                                                                                       tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAAAGCCCCCCCCCCCAACACCCCCCCGCAC‑TGGCGAAAAAAAAAGCCGCTGCGCGGTGGCCCCCGCGTAA‑ACCAAAACGCAACCCCGTCGGGCGCGAGGGAACaaac                                    >  2:4632805/1‑137 (MQ=2)
                                                                                                       tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCAC‑TGGCGAACAAAAACGCCGCTGCGCGGTGCCCTCGGCATAT‑CCCTTACGGCTAACCGGTAGGGCGCGAGGGAACAtac                                    >  2:10696215/1‑138 (MQ=11)
                                                                                                       tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATAGCCCCCGCCCCCAGCACCCCCCGGCTC‑TGGCGAACAAAAACGCCGCTGCGCGGTGGCCTCGGCGTAT‑ACCATAAGGCAACCCGGTAGGGCGCGAGGTAACCTcc                                    >  2:6359517/1‑140 (MQ=11)
                                                                                                       tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAAACCCCCCCCCCCACCACCCCCCGGCGA‑ATGCGAACAAAAAACCCCCGGCGCGGGGGCCCCGGCGTATACCCTAACGCAAACCGGG‑CGGGCGCGAGGTAACaaac                                    >  2:4589530/1‑137 (MQ=2)
                                                                                                           tGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCATCGCCGCCGCCCCCGGCACCCCCGGGCTC‑AGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCGTACCGCAACCGGGTAGGGGGCGCGGGAACATCCCAGt                                >  2:6781168/1‑140 (MQ=11)
                                                                                                            ggCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAAAGCCGCCGCCCCCCGCACCCCCCGGCTC‑TGGGGAAAAAAAAAACCGCTGCGCGGTGCCCACGGCGTAT‑AACGAAACGCAACCCGGTCGGGCGCGCGGTAACATACCAGTa                               >  2:1650920/1‑140 (MQ=2)
                                                                                                             gcgcAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCGTAT‑CCCGTACGGCTACCGGGTCGGGCGCGCGGTAACAGACCTGTaa                              >  2:8751391/1‑140 (MQ=11)
                                                                                                                 aaGGAGCGC‑GCAGGGGGCGG‑CCACTCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                          <  1:6258960/140‑1 (MQ=17)
                                                                                                                    gAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc                       <  2:8267600/140‑1 (MQ=32)
                                                                                                                    gAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTCAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc                       <  1:4748229/140‑1 (MQ=17)
                                                                                                                       cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                    <  1:7216800/140‑1 (MQ=32)
                                                                                                                       cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                    <  2:5636464/140‑1 (MQ=32)
                                                                                                                       cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                    <  1:9511960/140‑1 (MQ=32)
                                                                                                                             aGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc               <  1:10646332/140‑1 (MQ=32)
                                                                                                                                 ggcgt‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTAGCGGGTCGGGCGCGAGGTAACATCCCTGTATAACGCGCCCTCAGCCcaca           <  1:748512/140‑1 (MQ=12)
                                                                                                                                   cgg‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATc         <  1:3484455/140‑1 (MQ=32)
                                                                                                                                    gg‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATcc        <  2:1496097/140‑1 (MQ=32)
                                                                                                                                     g‑cCAATCGCCGCCGCCACCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGACATCGGCTTAT‑ACCTTACGGCTACAGGGTAGGGCGCGATGTAACATCCATGTAAAACGCGCCCTCAGCCCACCTCCa       >  2:1005420/1‑140 (MQ=11)
                                                                                                                                          aTCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTACCATCCCTGTAAAACGCGCCCTCAGCCCACAGCCAtgtg   >  1:2289632/1‑140 (MQ=17)
                                                                                                                                          aTCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg   >  1:10451785/1‑140 (MQ=32)
                                                                                                                                           tCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAATCGCGCCCTCAGCCCACATCCATGTgg  >  1:1496661/1‑140 (MQ=17)
                                                                                                                                           |                                                                                                                                             
GATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTC‑TGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGG  >  NZ_CP025268/2233088‑2233364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑