Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,233,2390TA35.7% 216.3 / 87.1 190intergenic (+139/+234)yohP/dusCsmall membrane protein YohP/tRNA dihydrouridine(16) synthase DusC
Reads supporting (aligned to +/- strand):  ref base T (41/67);  new base A (60/0);  total (123/67)
Fisher's exact test for biased strand distribution p-value = 1.58e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 192 total aligned reads displayed.

AATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTT  >  NZ_CP025268/2233101‑2233378
                                                                                                                                            |                                                                                                                                           
aattaattAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTg                                                                                                                                            <  2:2277390/140‑1 (MQ=255)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCCGGGGGGGGCCCGACCCCCCCCCCCCCCCCCACCCCCggcgg                                                                                                                                >  1:5300661/1‑137 (MQ=255)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCCGGGGGGG‑CCCGACGCCGCCGCCCCCCCCCCCCCCGGGctct                                                                                                                              >  1:9476038/1‑140 (MQ=37)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGAGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGctct                                                                                                                              >  1:7899558/1‑140 (MQ=255)
              atcaGGTCCGAAAATAACGAGAAGATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCGCCGCCCCCAGCACCCCCCGGcgca                                                                                                                              >  1:7613477/1‑137 (MQ=37)
                    tCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTATGGCGaa                                                                                                                        >  2:10203495/1‑140 (MQ=255)
                      cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCTGGGGCGG‑CCCATAGCCGCCGCCCCCAGCACCCCCCGGCGCTGGCGAAcc                                                                                                                      >  2:2650771/1‑139 (MQ=25)
                      cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAAAGGCGCCGCCCCCTGCACCCCCGGGCACATGCGAACa                                                                                                                      >  2:5943793/1‑140 (MQ=25)
                        aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGGGGGGGCGG‑GCCAAAGCCGCCCCCCCCCCCACCCCCCCGCGCAGGCGAACaaa                                                                                                                    >  1:3843397/1‑140 (MQ=255)
                        aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGCGG‑GCCATCGCCGCCGCCCCCCGCCCCCCCCGGCGCAGGCGCACcaa                                                                                                                    >  2:3484455/1‑140 (MQ=255)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGG‑CCAAAC‑CCGCCCCCCCCCGCCCCCCCCCGCGCAGGCGCACaaaaaagc                                                                                                               >  1:6365080/1‑136 (MQ=25)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGGGG‑CCAAAACCCCCCGCCCCCCGCACCCCCCCGCGCAGGCGAACaaaaaagc                                                                                                               >  2:1534063/1‑136 (MQ=25)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGG‑GCAATAGCCCCCGCCCCCAGCACCCCCGGGCTAAGGCGAACaaaaaagc                                                                                                               >  2:8123088/1‑136 (MQ=25)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAACGCCCCCGCCCCCAGCCCCCCCCCGCGCTGGCGAACaaaaaagc                                                                                                               >  2:1303696/1‑136 (MQ=25)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgc                                                                                                               <  2:541106/140‑1 (MQ=255)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgc                                                                                                               >  2:10684746/1‑140 (MQ=255)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATagc                                                                                                               >  2:7803286/1‑140 (MQ=255)
                                  gactatTTCAGTCTCTCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGCGG‑CCAATCGCCCCCGCCCCCAGCCCCCCCCGGCACTGGCGAACAAAATCGCCGCTg                                                                                                          >  2:6258960/4‑140 (MQ=21)
                                      atTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGcgcg                                                                                                      <  1:10684746/140‑1 (MQ=255)
                                      atTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTAATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGcgcg                                                                                                      <  1:1534063/140‑1 (MQ=255)
                                       tatCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAATGAGCGC‑GCAGGGGGCCG‑CCAAAACCCGCCCCCCCCAGCACCCCCCGGCTCTGGGGCACAAAATACCCGCTGCGCgg                                                                                                     >  2:8923550/3‑140 (MQ=255)
                                           aGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGcc                                                                                                 <  1:9249726/140‑1 (MQ=255)
                                           aGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGcc                                                                                                 <  1:9250177/140‑1 (MQ=255)
                                            gTCTCTCCTCCTGTGTCGCTCCGGTCATGTGCATTGCTTCATATCATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGGGccc                                                                                                <  2:479900/140‑1 (MQ=18)
                                            gTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCTTATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGccc                                                                                                <  1:5493636/140‑1 (MQ=255)
                                            gTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTACATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGccc                                                                                                <  1:2999030/140‑1 (MQ=255)
                                               tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATCATCACTGGCGCAAGGAGCGC‑GCACGGGGCGG‑CCAAAACCCCCCCCCCCCAGCACCCCCGGGCGCTTGCGAACACAATCGCCCCTGCGCGGTGTCcgcg                                                                                             >  2:7988782/1‑140 (MQ=18)
                                                 tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCACGGGGCGG‑CCAAACGCCGCCGCCCCCAGCACCCCCGGGCACAGGCGAACAAAAACGCCGCTGCGCGGTGCCCACGGc                                                                                           >  2:10285238/1‑140 (MQ=18)
                                                 tcATCCTCTTGCGCCCCTGTCATGTGCATTGCGTCAGAGAAGCACTGGCGCCAGGAGCGC‑GCCCGGGGCGG‑CCAATCGCCGCCGGCCCCAGCCCCCCCCCGCTCGGGCGAACAAAAGCGCCGCTGCGCGGTGCCCGCggg                                                                                           >  2:789209/1‑139 (MQ=17)
                                                  cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt                                                                                          <  1:4385335/140‑1 (MQ=255)
                                                  cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCATGGGGGGG‑CCAAAACCCGCCCCCCCCAACACCCCCCGGCACTGGCGAAAAAAATAACCCCTGCGCGGTGCCCACGGcg                                                                                          >  2:4158161/1‑139 (MQ=18)
                                                  cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACCCCCCCGCCCCCAGCACCCCCCGGCTAATGCCGACAAAAACCCCGCAGCGCCGGGGCCTCCGCt                                                                                          >  1:6926390/1‑140 (MQ=18)
                                                       tGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑GCAATCGCCGCCGCCCCCTGCACCCCCCGGCACTGGCGAACAAAAAAGCCGCAGCCCGGTGCCCAAGGCTTATcc                                                                                     >  2:10016212/1‑140 (MQ=18)
                                                       tGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTATcc                                                                                     >  2:11487623/1‑140 (MQ=255)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGG‑CCCATAGCCGCCCCCCCCCGCACCCCCCGGCTCAGGCGAACAAAAAAGCCCCGGCGCGGTGCCCACGGCGTaaacca                                                                                   >  2:2143302/1‑135 (MQ=18)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCCCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCCCTGCGCGGTGCCCACCGCTTATacca                                                                                   >  2:8245118/1‑139 (MQ=18)
                                                           gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGGGG‑CCCAAACCCCCCCCCCCCCGCACCCCCCCGCGCAGGGGAAAAAAAAAACCCCAGAGCGGGGGCCCCGGCTTATACCCTa                                                                                 >  1:11412340/1‑140 (MQ=255)
                                                           gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCATAGCCGCCGCCCCCAGCACCCCCCGGCACAGGCGCACAAAAACGCCGCAGCGCGGTGCCCACGGCTTaaaccata                                                                                 >  2:9283944/1‑133 (MQ=18)
                                                           gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa                                                                                 <  1:9777986/140‑1 (MQ=255)
                                                            cgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTAc                                                                                <  1:4907113/140‑1 (MQ=255)
                                                             gcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCGCTGGCGAACAAAATCGCCGCGGCGCGGTGCCCTCGGCGTATCCCTGACg                                                                               >  2:1922458/1‑140 (MQ=18)
                                                             gcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCCCCCCCCCCAGCCCCCCCCGGCACAGGCGAACAAAAACACCCCGGCGCGGTGGCCACGGCGTATcccaaaag                                                                               >  2:4560917/1‑135 (MQ=18)
                                                              cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCGGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACACAATCGCCGCGGCGCGGTGCCCTCGGCGTATCCCTTACgg                                                                              >  2:7499885/1‑140 (MQ=255)
                                                               tCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGGGG‑GCAAACCCCCCCCCCCCCAGAAACCCCCGGCGCAGGCGAAAAAAAAAGCCCCAGGCCGGGGCCCACGCCTTATCCCATaatgc                                                                             >  1:7917391/1‑136 (MQ=255)
                                                                   gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATAGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCGTAAACCATACGGCTaac                                                                         >  2:5948804/1‑138 (MQ=17)
                                                                   gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATAGCCGCCGCCCCCAGCACCCCCCGGCGAGGGCGCACAAAAACGCCGCGGCGCGGGGCCCGCGGCGTTTCCCATACGGcgaac                                                                         >  2:10814906/1‑136 (MQ=17)
                                                                      aTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCCCCGCCCCCCGCACCCCCGGGCTCAGGCGAACAAAATCGCCCCTGCGCGGTGCCCACGGCGTATCCCATACGGCGACCggg                                                                      >  2:971891/1‑140 (MQ=17)
                                                                        gtgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTc                                                                    <  2:10102090/140‑1 (MQ=255)
                                                                         tgCATTGCTTCATATCATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCGTATCACTAACGGCTACCGAGTCg                                                                   >  2:7682087/1‑140 (MQ=14)
                                                                         tgCATTGCTTCATATACTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCGCGGCTTATCCCTTACGGCTACCGGGTCg                                                                   >  2:7625390/1‑140 (MQ=255)
                                                                         tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAAGCCGCCCCCCCCAGCACCCCCCGGCGCTGGCGCACCAAAAAGCCGCGGCGCGGTGCCCGCGGCTTAAACCATAAGGCTACCcgggag                                                                   >  2:5846238/1‑137 (MQ=9)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                                 <  2:8499494/140‑1 (MQ=255)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGCCCG‑CCAAAAGCCCCCGCCCCCAGCACCCCCGGGCACAGGCGAACAAAATAGACGCAGAGCGGTGCCCACGGCATATAACATAAGGCTAACCGGTCggg                                                                 >  2:178860/1‑140 (MQ=9)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGACGG‑CCCAACGCCGCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAACGCCGCAGCGCGGTGCCCACCGCTTATACCCTACCGCAACCGCGTCggg                                                                 >  2:10817851/1‑140 (MQ=14)
                                                                             ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGGCGCCCCCTGCACCCCCGGGCGCTGGCGAACAAAATCGCCGCTGGGCGGTGGCCTCGGCTGATCCCTTACGGCTACCGGGTCGGgcg                                                               >  2:10950737/1‑140 (MQ=14)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAAACCCCCCCCCCCCCGCACCCCCCGGCAAAGGCGCACAAAAACGCCCCAGCGCCGGGCCCAAGGCATATCCCATAACGCGACCGGGGCGGgcgc                                                              >  2:5657304/1‑140 (MQ=9)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc                                                              <  1:1652915/140‑1 (MQ=255)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc                                                              <  1:7241387/140‑1 (MQ=255)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCCCTGCGCGGTGCCCTCGGCTTATCCCTTTCGGCTACCGGGTCGGgcgc                                                              >  2:8708185/1‑140 (MQ=255)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCGCGGCATAACCCATACCGCGACCGGGTCGGgcgc                                                              >  2:10646332/1‑140 (MQ=14)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATAGCCGCCGCCCCCAGCACCCCCGGGCGCTGGCGAACAAAAAAGCCGCTGCGCGGTTCCCACGGCTTATCCCTTACGGCTACCGGGTCGGgcgc                                                              >  2:6365283/1‑140 (MQ=14)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAACGCCCCCGCCCCCAGCACCCCCCGGCTAAGGCGAAAAAAAACGCCCCAGCGCGGTGCCCACGGCTTATACCATAAGGCAACCCGGTCGGgcgc                                                              >  2:4616143/1‑140 (MQ=14)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAAAACCCGCCCCCCCCAGCCCCCCCCGGCACATGCGAAAAAAAAAGCCCCAGCGCCGTGCCCACCGCGTAACCCATAACGCAACCCGGTCGGgcgc                                                              >  2:5562345/1‑140 (MQ=9)
                                                                                   cATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGG‑CCAAAC‑CCCCCCCCCCCAGCCCCCCCCGGGGCAGGCGACAAAAAAACCCCCAGCGCGGGGCCCACGGCGGATCACGTACCGCGACCCGGGCGGGGGCGCggg                                                         >  1:8576982/1‑139 (MQ=255)
                                                                                     tataATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                                       <  2:5630465/140‑1 (MQ=37)
                                                                                     tataATCACTGGCGCAAGGAGCGA‑GCAGGGGGCCG‑CCAATCGCCGCCGCCCCCTGCACCCCCGCGCTCTGGCGAACAAAATCGCCCCAGCGCGGTGCCCACGGCTTATACCTTAAGGCTACCCCGTAGGGCGCGAGGGaa                                                       >  2:6472152/1‑140 (MQ=11)
                                                                                       taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                                     <  2:8872641/140‑1 (MQ=35)
                                                                                       taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa                                                     <  2:7926054/140‑1 (MQ=35)
                                                                                        aaccACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                                    <  1:2073444/137‑1 (MQ=14)
                                                                                        aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                                    <  1:1869605/140‑1 (MQ=34)
                                                                                          tCACTGGCGCAAGGAGCGC‑GGAGGGGGCGG‑CCCAAAGCCGCCCCCCCCAGCCCCCCCCGGCGCTGGCGAACAAAAAAGCCCCTGCGCGGGGCCCACCGCATATACCATAACGCAACCCGGTCGGGCGCGCGGGAACaaac                                                  >  2:421898/1‑137 (MQ=255)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCCGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCTTATCCCATACGGCTACCCGGTCGGGCGCGAGGTAACAAcc                                                  >  2:11530570/1‑140 (MQ=11)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAACGCCGCCCCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAACGCCGCTGCGCGGTGCCCTCGGGATATACCATACGGCTACCCGGTCGGGCGCGAGGGAACaaac                                                  >  2:3812913/1‑137 (MQ=11)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCCAAAGCCCCCCCCCCCAACACCCCCCCGCACTGGCGAAAAAAAAAGCCGCTGCGCGGTGGCCCCCGCGTAAACCAAAACGCAACCCCGTCGGGCGCGAGGGAACaaac                                                  >  2:4632805/1‑137 (MQ=2)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCAGGCGAACAAAAAAGCCGCTGCGCGGTGCCCACGGCTTATCCCGTAAGGCTACCCGGTCGGGCGCGAGGTAACATcc                                                  >  2:11201076/1‑140 (MQ=11)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCGGGCACTGGCGAACAAAAACGCCGCTGCGCGGTGCCCTCGGCATATCCCTTACGGCTAACCGGTAGGGCGCGAGGGAACAtac                                                  >  2:10696215/1‑138 (MQ=11)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATAGCCCCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAAACGCCGCTGCGCGGTGGCCTCGGCGTATACCATAAGGCAACCCGGTAGGGCGCGAGGTAACCTcc                                                  >  2:6359517/1‑140 (MQ=11)
                                                                                                    aaGGAGCGC‑GCAGGGGGCGG‑CCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                                        <  1:6258960/140‑1 (MQ=17)
                                                                                                      ggAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcgcg                                      <  2:5594884/140‑1 (MQ=32)
                                                                                                       gAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTCATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc                                     <  1:4748229/140‑1 (MQ=17)
                                                                                                         gcgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGccc                                   <  2:6755509/140‑1 (MQ=32)
                                                                                                          cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  1:4334754/140‑1 (MQ=32)
                                                                                                          cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  1:1303696/140‑1 (MQ=32)
                                                                                                          cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  2:1400504/140‑1 (MQ=32)
                                                                                                          cgc‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  2:11021654/140‑1 (MQ=32)
                                                                                                            c‑gcAGGGGGCGG‑CCAATCGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCCGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCCGGTCGGGCGCGAGGTAACAACCCAGTAAAACGCGCCCTCa                                >  2:6899438/1‑140 (MQ=11)
                                                                                                               cAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc                              <  1:2650771/140‑1 (MQ=32)
                                                                                                                aGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc                             <  1:10646332/140‑1 (MQ=32)
                                                                                                                    ggcgt‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTAGCGGGTCGGGCGCGAGGTAACATCCCTGTATAACGCGCCCTCAGCCcaca                         <  1:748512/140‑1 (MQ=12)
                                                                                                                    ggcgg‑cCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca                         <  2:3902261/140‑1 (MQ=32)
                                                                                                                      cgg‑cCAATCGCCGCCGCCCCCTGCACCCCCCGGCTCTGGCGAACAAAATCGCCCCTGCGCGGTGCCCTCGGCGTATCCCTTACGGCTACCCGGTCGGGCGCGAGGTAACAACCCAGTAAAACGCgcccacagcccacaac                       >  2:4371928/1‑138 (MQ=11)
                                                                                                                             ttCGCCGCCGCCCCCTGCACCACCGGGCTCTGGCGAACAACATCGCCGCTGCGCGGTGCCCGCGGCTTATCCCTTACGGCTCCCGGGTAGGGCGCGAGGTAAACTCCCTGTAAAACGCGCCCTCAGCCCACCTCCAtgtg                 >  2:6792786/2‑140 (MQ=11)
                                                                                                                             aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  1:10451785/1‑140 (MQ=32)
                                                                                                                             aTCGCCGCCGCCCCCTGCACCCCCGGGCACTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGCCTACCGGGTCGGGCGCGAGGTAACAACCCTGTAAATCGCGCCCTCAGCCCACATCCAtgag                 >  2:1847864/1‑138 (MQ=11)
                                                                                                                                   gccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTCCCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGc           >  2:9458973/1‑140 (MQ=17)
                                                                                                                                    ccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACAGCCAGGTGGGCTGcc          >  2:6702733/1‑140 (MQ=17)
                                                                                                                                        ccccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTTCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCgg      <  2:7138745/140‑1 (MQ=17)
                                                                                                                                         cccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGCGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGc     <  2:5161904/140‑1 (MQ=17)
                                                                                                                                         cccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGc     <  1:5846238/140‑1 (MQ=32)
                                                                                                                                            tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTAACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCtt  >  2:83132/1‑140 (MQ=17)
                                                                                                                                            |                                                                                                                                           
AATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTT  >  NZ_CP025268/2233101‑2233378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑