mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 7,926 | Δ1 bp | pseudogene (35/1432 nt) | yaaJ ← | sodium:alanine symporter family protein |
| RA | 10,648 | G→A | A237V (GCC→GTC) | msyB ← | acidic protein MsyB |
| RA | 14,302 | T→C | V45A (GTG→GCG) | dnaJ → | molecular chaperone DnaJ |
| RA | 28,270 | T→C | intergenic (+62/‑105) | rihC → / → dapB | ribonucleoside hydrolase RihC/4‑hydroxy‑tetrahydrodipicolinate reductase |
| RA | 30,617 | C→T | P322P (CCC→CCT) | carA → | glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit |
| RA | 35,374 | C→G | intergenic (‑2/+4) | caiE ← / ← caiD | carnitine operon protein CaiE/crotonobetainyl‑CoA hydratase |
| RA | 37,904 | T→C | N405D (AAC→GAC) | caiB ← | L‑carnitine CoA‑transferase |
| RA | 47,777 | A→G | *177* (TAA→TAG) N3S (AAC→AGC) |
kefF → kefC → |
glutathione‑regulated potassium‑efflux system oxidoreductase KefF glutathione‑regulated potassium‑efflux system protein KefC |
| RA | 49,766 | T→C | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,832 | C→T | S3S (AGC→AGT) | folA → | type 3 dihydrofolate reductase |
| RA | 66,448 | C→T | G35E (GGG→GAG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase |
| RA | 71,946 | A→G | *255* (TAA→TAG) | yabI → | DedA family protein |
| RA | 72,060 | T→C | *233* (TAA→TAG) | thiQ ← | thiamine ABC transporter ATP‑binding protein ThiQ |
| RA | 75,278 | G→A | R12C (CGC→TGC) | thiB ← | thiamine ABC transporter substrate binding subunit |
| RA | 95,839 | A→G | *453* (TAA→TAG) I3V (ATT→GTT) |
murF → mraY → |
UDP‑N‑acetylmuramoyl‑tripeptide‑‑D‑alanyl‑D‑ alanine ligase phospho‑N‑acetylmuramoyl‑pentapeptide‑ transferase |
| RA | 104,183 | G→A | G124E (GGG→GAG) | ftsA → | cell division protein FtsA |
| RA | 111,264 | A→G | *130* (TAA→TAG) | mutT → | 8‑oxo‑dGTP diphosphatase MutT |
| RA | 112,069 | G→A | A121V (GCG→GTG) | zapD ← | cell division protein ZapD |
| RA | 115,492 | C→T | V22M (GTG→ATG) | hofC ← | protein transport protein HofC |
| RA | 117,629 | G→A | P283L (CCA→CTA) | nadC ← | carboxylating nicotinate‑nucleotide diphosphorylase |
| RA | 122,687 | A→G | *255* (TAA→TAG) | pdhR → | pyruvate dehydrogenase complex transcriptional repressor PdhR |
| RA | 125,058 | C→T | R737R (CGC→CGT) | aceE → | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| RA | 138,217 | T→C | F435S (TTT→TCT) | cueO → | multicopper oxidase CueO |
| RA | 150,778 | C→T | A3T (GCT→ACT) | yadC ← | fimbrial tip‑adhesin YadC |
| RA | 151,867 | T→C | I66V (ATA→GTA) | yadL ← | fimbrial‑like protein YadL |
| RA | 155,766 | C→T | K89K (AAG→AAA) | yadV ← | fimbrial chaperone |
| RA | 159,854 | G→A | F20F (TTC→TTT) | gluQRS ← | tRNA glutamyl‑Q(34) synthetase GluQRS |
| RA | 160,613 | T→C | *235* (TAA→TAG) | sfsA ← | DNA/RNA nuclease SfsA |
| RA | 162,758 | A→G | T275A (ACT→GCT) | hrpB → | ATP‑dependent helicase HrpB |
| RA | 167,574 | T→C | I87T (ATC→ACC) | fhuA → | ferrichrome porin FhuA |
| RA | 169,476 | G→A | C721Y (TGC→TAC) | fhuA → | ferrichrome porin FhuA |
| RA | 177,493 | T→C | *267* (TAA→TAG) | btuF ← | vitamin B12 ABC transporter substrate‑binding protein BtuF |
| RA | 183,046 | T→C | G251G (GGT→GGC) | cdaR → | DNA‑binding transcriptional regulator CdaR |
| RA | 183,437 | +A | coding (1144/1212 nt) | cdaR → | DNA‑binding transcriptional regulator CdaR |
| RA | 183,450 | A→G | K386R (AAG→AGG) | cdaR → | DNA‑binding transcriptional regulator CdaR |
| RA | 184,087 | T→C | *271* (TAA→TAG) | yaeI ← | phosphodiesterase YaeI |
| RA | 197,404 | C→T | S343S (AGC→AGT) | rseP → | sigma E protease regulator RseP |
| RA | 200,044 | T→C | S763P (TCA→CCA) | bamA → | outer membrane protein assembly factor BamA |
| RA | 219,194 | C→T | P77P (CCG→CCA) | tsaA ← | tRNA (N6‑threonylcarbamoyladenosine(37)‑N6)‑methyltransferase TrmO |
| RA | 220,069 | T→C | L230L (CTA→CTG) | metQ ← | methionine ABC transporter substrate‑binding lipoprotein MetQ |
| RA | 239,208 | A→G | pseudogene (279/279 nt) | CXP41_RS01150 → | ISAs1 family transposase |
| RA | 247,291 | A→G | *250* (TAA→TAG) | yafL → | C40 family peptidase |
| RA | 247,295 | +G | intergenic (+4/‑171) | yafL → / → rayT | C40 family peptidase/REP‑associated tyrosine transposase RayT |
| RA | 252,913 | G→A | A126T (GCA→ACA) | yafP → | GNAT family N‑acetyltransferase |
| RA | 255,488 | G→A | R20C (CGT→TGT) | pepD ← | cytosol nonspecific dipeptidase |
| RA | 261,616 | A→G | H354R (CAT→CGT) | proA → | glutamate‑5‑semialdehyde dehydrogenase |
| RA | 306,029 | C→T | V786M (GTG→ATG) | ecpC ← | fimbrial usher EcpC |
| RA | 308,410 | T→C | *223* (TAA→TAG) | ecpB ← | fimbrial chaperone EcpB |
| RA | 311,241 | T→C | G26G (GGT→GGC) | CXP41_RS01610 → | protein YkgL |
| RA | 314,296 | A→G | intergenic (+12/‑47) | CXP41_RS01640 → / → CXP41_RS01645 | inverse autotransporter beta domain‑containing protein/IS3‑like element IS3 family transposase |
| RA | 315,505 | A→G | *388* (TAA→TAG) | CXP41_RS01645 → | IS3‑like element IS3 family transposase |
| RA | 320,615 | (G)6→7 | intergenic (+482/‑44) | rclR → / → ykgE | reactive chlorine‑specific transcriptional regulator RclR/heterodisulfide reductase‑related iron‑sulfur binding cluster |
| RA | 322,406 | T→C | S340P (TCA→CCA) | ykgF → | LutB/LldF family L‑lactate oxidation iron‑sulfur protein |
| RA | 335,021 | T→C | intergenic (+85/‑39) | yahD → / → yahE | ankyrin repeat domain‑containing protein/DUF2877 domain‑containing protein |
| RA | 339,140 | A→G | *99* (TAA→TAG) | CXP41_RS01780 → | protein YahH |
| RA | 343,725 | C→T | H167Y (CAC→TAC) | CXP41_RS01800 → | protein YahL |
| RA | 344,042 | A→G | *272* (TAA→TAG) | CXP41_RS01800 → | protein YahL |
| RA | 344,700 | A→G | *82* (TAA→TAG) | CXP41_RS01805 → | protein YahM |
| RA | 345,338 | C→T | L17L (TTG→TTA) | yahN ← | LysE family transporter |
| RA | 348,898 | C→T | intergenic (+275/‑165) | prpB → / → prpC | methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 353,643 | A→G | *629* (TAA→TAG) | prpE → | propionate‑‑CoA ligase |
| RA | 356,642 | T→C | intergenic (+137/+200) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional regulator CynR |
| RA | 356,657 | T→C | intergenic (+152/+185) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional regulator CynR |
| RA | 356,677 | 2 bp→CC | intergenic (+172/+164) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional regulator CynR |
| RA | 356,842 | T→C | *300* (TAA→TAG) | cynR ← | transcriptional regulator CynR |
| RA | 370,593 | T→C | pseudogene (304/867 nt) | mhpC → | 2‑hydroxy‑6‑oxonona‑2,4‑dienedioate hydrolase |
| RA | 372,017 | G→A | A16T (GCC→ACC) | mhpF → | acetaldehyde dehydrogenase |
| RA | 374,118 | G→A | intergenic (+186/‑392) | dmpG → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter |
| RA | 374,126 | A→G | intergenic (+194/‑384) | dmpG → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter |
| RA | 374,298 | G→A | intergenic (+366/‑212) | dmpG → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter |
| RA | 374,358 | T→C | intergenic (+426/‑152) | dmpG → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter |
| RA | 378,657 | T→C | *92* (TAA→TAG) | frmR ← | formaldehyde‑responsive transcriptional repressor FrmR |
| RA | 381,630 | A→G | *410* (TAA→TAG) | CXP41_RS01975 → | IS3‑like element IS2 family transposase |
| RA | 382,310 | T→C | Q226R (CAG→CGG) | yaiP ← | glycosyltransferase family 2 protein |
| RA | 383,110 | T→C | pseudogene (558/672 nt) | CXP41_RS01990 ← | PIG‑L family deacetylase |
| RA | 384,788 | G→A | G169D (GGT→GAT) | tauA → | taurine ABC transporter substrate‑binding protein |
| RA | 390,790 | T→C | pseudogene (1489/1527 nt) *388* (TAA→TAG) |
CXP41_RS02030 → CXP41_RS02035 ← |
outer membrane autotransporter barrel domain‑containing protein IS3‑like element IS3 family transposase |
| RA | 390,887 | G→A | A356V (GCG→GTG) | CXP41_RS02035 ← | IS3‑like element IS3 family transposase |
| RA | 400,598 | +G | pseudogene (162/260 nt) | iraP → | anti‑adapter protein IraP |
| RA | 410,347 | T→C | *395* (TAA→TAG) | araJ ← | MFS transporter AraJ |
| RA | 436,157 | A→G | *173* (TAA→TAG) | pgpA → | phosphatidylglycerophosphatase A |
| RA | 442,101 | T→C | *197* (TAA→TAG) | yajL ← | protein deglycase YajL |
| RA | 442,654 | T→C | N13S (AAT→AGT) *304* (TAA→TAG) |
yajL ← panE ← |
protein deglycase YajL 2‑dehydropantoate 2‑reductase |
| RA | 443,691 | T→C | intergenic (‑126/‑42) | panE ← / → yajQ | 2‑dehydropantoate 2‑reductase/nucleotide binding protein YajQ |
| RA | 449,814 | T→C | T283A (ACT→GCT) | cyoA ← | cytochrome o ubiquinol oxidase subunit II |
| RA | 460,292 | A→G | *785* (TAA→TAG) | lon → | endopeptidase La |
| RA | 467,560 | G→A | G43E (GGG→GAG) | decR → | DNA‑binding transcriptional regulator DecR |
| RA | 468,479 | G→A | E187K (GAG→AAG) | mdlA → | SmdA family multidrug ABC transporter permease/ATP‑binding protein |
| RA | 469,693 | A→G | *591* (TAA→TAG) N3S (AAT→AGT) |
mdlA → mdlB → |
SmdA family multidrug ABC transporter permease/ATP‑binding protein SmdB family multidrug efflux ABC transporter permease/ATP‑binding protein |
| RA | 474,717 | C→T | P97S (CCA→TCA) | ybaY → | YbaY family lipoprotein |
| RA | 476,075 | A→G | *118* (TAA→TAG) | ybaA → | DUF1428 domain‑containing protein |
| RA | 476,485 | C→T | A395T (GCT→ACT) | pdeB ← | cyclic‑guanylate‑specific phosphodiesterase PdeB |
| RA | 477,583 | T→C | T29A (ACC→GCC) | pdeB ← | cyclic‑guanylate‑specific phosphodiesterase PdeB |
| RA | 479,384 | T→C | *125* (TAA→TAG) | tomB ← | Hha toxicity modulator TomB |
| RA | 485,691 | C→T | P36S (CCA→TCA) | mscK → | mechanosensitive channel MscK |
| RA | 489,335 | T→C | *176* (TAA→TAG) | priC ← | primosomal replication protein N'' |
| RA | 490,826 | C→T | A122V (GCT→GTT) | apt → | adenine phosphoribosyltransferase |
| RA | 498,064 | T→C | R320R (CGT→CGC) *320* (TAA→TAG) |
hemH → aes ← |
ferrochelatase acetyl esterase |
| RA | 514,858 | T→C | intergenic (‑35/‑111) | qmcA ← / → fetA | SPFH/Band 7/PHB domain protein/iron ABC transporter ATP‑binding protein FetA |
| RA | 517,771 | A→C | I143M (ATT→ATG) | ybbO ← | NADP(+)‑dependent aldehyde reductase |
| RA | 521,513 | C→T | A683V (GCG→GTG) | ybbP → | ABC transporter permease |
| RA | 523,208 | T→C | L300L (TTG→CTG) | rhsD → | rhs element protein RhsD |
| RA | 539,565 | T→C | intergenic (+7/‑50) | allB → / → ybbY | allantoinase AllB/uracil/xanthine transporter |
| RA | 541,580 | G→A | A215T (GCG→ACG) | glxK → | glycerate 3‑kinase |
| RA | 543,804 | T→C | H180R (CAT→CGT) | allC ← | allantoate deiminase |
| RA | 550,382 | A→G | *298* (TAA→TAG) | ybcF → | carbamate kinase |
| RA | 567,054 | A→G | *388* (TAA→TAG) | CXP41_RS02940 → | IS3‑like element IS3 family transposase |
| RA | 570,494 | A→G | *184* (TAA→TAG) | ybcL → | Raf kinase inhibitor‑like protein YbcL |
| RA | 571,504 | T→C | C29C (TGT→TGC) | CXP41_RS02970 → | hypothetical protein |
| RA | 577,618 | A→G | intergenic (+59/+32) | rzoD → / ← bor | prophage lysis lipoprotein RzoD/serum resistance lipoprotein Bor |
| RA | 579,290 | G→A | intergenic (+154/+11) | CXP41_RS03055 → / ← ylcI | protein YbcW/YlcI/YnfO family protein |
| RA | 581,197 | +G | intergenic (+50/+4) | CXP41_RS24355 → / ← CXP41_RS03085 | tail fiber assembly protein/class I SAM‑dependent methyltransferase |
| RA | 581,201 | T→C | pseudogene (667/667 nt) | CXP41_RS03085 ← | class I SAM‑dependent methyltransferase |
| RA | 585,329 | C→T | S210N (AGC→AAC) | envY ← | DNA‑binding transcriptional regulator EnvY |
| RA | 607,037 | A→G | *51* (TAA→TAG) | hokE → | type I toxin‑antitoxin system toxin HokE |
| RA | 630,861 | C→T | S640F (TCC→TTC) | cstA → | pyruvate/proton symporter CstA |
| RA | 633,795 | 2 bp→GC | [ybdL]–[ybdM] | [ybdL], [ybdM] | |
| RA | 648,421 | G→A | S67F (TCC→TTC) | citF ← | citrate lyase subunit alpha |
| RA | 648,697 | G→A | G281G (GGC→GGT) | citE ← | citrate (pro‑3S)‑lyase subunit beta |
| RA | 661,202 | A→C | D42E (GAT→GAG) | lipB ← | lipoyl(octanoyl) transferase LipB |
| RA | 663,151 | T→C | *363* (TAA→TAG) | rlpA ← | endolytic peptidoglycan transglycosylase RlpA |
| RA | 671,996 | A→C | F613V (TTT→GTT) | leuS ← | leucine‑‑tRNA ligase |
| RA | 674,619 | T→C | pseudogene (977/977 nt) | ybeQ ← | SEL1‑like repeat protein |
| RA | 674,649 | +T | pseudogene (947/977 nt) | ybeQ ← | SEL1‑like repeat protein |
| RA | 676,937 | A→G | T159A (ACC→GCC) | djlB → | J domain‑containing protein |
| RA | 678,922 | A→G | R123G (AGG→GGG) | ybeU → | DUF1266 domain‑containing protein |
| RA | 695,324 | A→G | *392* (TAA→TAG) | ubiF → | 3‑demethoxyubiquinol 3‑hydroxylase |
| RA | 710,772 | T→C | T59A (ACG→GCG) | ybfE ← | LexA regulated protein |
| RA | 715,436 | T→C | pseudogene (210/651 nt) | CXP41_RS03795 ← | DUF2625 domain‑containing protein |
| RA | 722,577 | (T)9→8 | pseudogene (887/2686 nt) | kdpD ← | two‑component system sensor histidine kinase KdpD |
| RA | 737,902 | A→G | intergenic (+3/‑148) | ybfD → / → ybgA | ISAs1 family transposase/YbgA family protein |
| RA | 745,772 | T→C | H263H (CAT→CAC) *349* (TAA→TAG) |
nei → abrB ← |
endonuclease VIII AbrB family transcriptional regulator |
| RA | 745,775 | A→G | *264* (TAA→TAG) A348A (GCT→GCC) |
nei → abrB ← |
endonuclease VIII AbrB family transcriptional regulator |
| RA | 761,788 | A→G | *406* (TAA→TAG) | odhB → | 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase |
| RA | 774,169 | A→G | A123A (GCA→GCG) | ybgC → | tol‑pal system‑associated acyl‑CoA thioesterase |
| RA | 801,562 | C→A | L54I (CTT→ATT) | ybhJ → | hydratase |
| RA | 820,054 | A→G | *226* (TAA→TAG) | bioD → | dethiobiotin synthase |
| RA | 826,854 | A→G | *151* (TAA→TAG) | moaE → | molybdopterin synthase catalytic subunit MoaE |
| RA | 828,613 | A→G | *238* (TAA→TAG) | ybhM → | Bax inhibitor‑1/YccA family protein |
| RA | 832,209 | A→G | V336A (GTG→GCG) | ybhR ← | ABC transporter permease |
| RA | 833,226 | T→C | *378* (TAA→TAG) | ybhS ← | ABC transporter permease |
| RA | 837,079 | T→C | M1M (ATG→GTG) † *224* (TAA→TAG) |
hlyD ← cecR ← |
secretion protein HlyD DNA‑binding transcriptional regulator CecR |
| RA | 857,496 | C→T | P20S (CCC→TCC) | CXP41_RS24120 → | hypothetical protein |
| RA | 859,976 | T→C | *43* (TAA→TAG) | mntS ← | manganase accumulation protein MntS |
| RA | 861,872 | A→G | *373* (TAA→TAG) | ybiR → | anion transporter |
| RA | 862,903 | G→A | intergenic (‑52/‑167) | ldtB ← / → ybiT | L,D‑transpeptidase/ABC‑F family ATPase |
| RA | 867,745 | G→A | H657Y (CAT→TAT) | ybiW ← | glycyl radical protein |
| RA | 879,908 | A→G | *304* (TAA→TAG) | gsiD → | glutathione ABC transporter permease GsiD |
| RA | 882,434 | A→G | *783* (TAA→TAG) | pdeI → | EAL domain‑containing protein |
| RA | 886,964 | A→G | *372* (TAA→TAG) S208S (AGT→AGC) |
yliI → gstB ← |
aldose sugar dehydrogenase YliI glutathione S‑transferase GstB |
| RA | 895,066 | A→G | *179* (TAA→TAG) | rcdA → | DNA‑binding transcriptional regulator RcdA |
| RA | 899,976 | A→G | *301* (TAA→TAG) | rimK → | 30S ribosomal protein S6‑‑L‑glutamate ligase |
| RA | 912,850 | A→G | *277* (TAA→TAG) R337R (CGT→CGC) |
amiD → ybjS ← |
N‑acetylmuramoyl‑L‑alanine amidase AmiD NAD(P)‑dependent oxidoreductase |
| RA | 918,239 | G→A | intergenic (‑83/+50) | poxB ← / ← hcr | ubiquinone‑dependent pyruvate dehydrogenase/NADH oxidoreductase |
| RA | 920,456 | A→G | L156L (TTG→CTG) | hcp ← | hydroxylamine reductase |
| RA | 922,837 | C→T | K106K (AAG→AAA) | aqpZ ← | aquaporin Z |
| RA | 929,473 | T→C | *75* (TAA→TAG) | cspD ← | cold shock‑like protein CspD |
| RA | 934,312 | G→A | R76R (CGC→CGT) | aat ← | leucyl/phenylalanyl‑tRNA‑‑protein transferase |
| RA | 939,446 | (A)7→8 | intergenic (‑289/‑255) | trxB ← / → lrp | thioredoxin‑disulfide reductase/leucine‑responsive transcriptional regulator Lrp |
| RA | 945,089 | A→G | *204* (TAA→TAG) | lolA → | outer membrane lipoprotein chaperone LolA |
| RA | 973,690 | A→G | *755* (TAA→TAG) | ycaI → | ComEC family protein |
| RA | 974,224 | G→A | Q166Q (CAG→CAA) | msbA → | lipid A ABC transporter ATP‑binding protein/permease MsbA |
| RA | 976,458 | A→G | *329* (TAA→TAG) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 990,729 | A→G | *183* (TAA→TAG) | mepK → | YcbK family protein |
| RA | 993,777 | G→A | R104R (CGC→CGT) | ompF ← | porin OmpF |
| RA | 1,013,520 | +G | pseudogene (463/542 nt) | zapC → | cell division protein ZapC |
| RA | 1,013,596 | T→C | pseudogene (539/542 nt) *370* (TAA→TAG) |
zapC → ycbX ← |
cell division protein ZapC 6‑N‑hydroxylaminopurine resistance protein YcbX |
| RA | 1,075,358 | A→G | *58* (TAA→TAG) | ymdF → | general stress protein |
| RA | 1,075,379 | +G | intergenic (+21/+234) | ymdF → / ← rutG | general stress protein/pyrimidine utilization transport protein G |
| RA | 1,075,387 | +T | intergenic (+29/+226) | ymdF → / ← rutG | general stress protein/pyrimidine utilization transport protein G |
| RA | 1,079,162 | A→G | L34L (TTG→CTG) | rutC ← | 3‑aminoacrylate deaminase |
| RA | 1,080,834 | T→C | T75A (ACG→GCG) | rutA ← | pyrimidine utilization protein A |
| RA | 1,089,162 | G→A | pseudogene (705/830 nt) | CXP41_RS05660 → | FTR1 family protein |
| RA | 1,089,998 | A→T | R218R (CGA→CGT) | efeO → | iron uptake system protein EfeO |
| RA | 1,096,672 | C→T | E96E (GAG→GAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase PgaB |
| RA | 1,101,377 | T→C | *388* (TAA→TAG) | CXP41_RS05705 ← | IS3‑like element IS3 family transposase |
| RA | 1,109,323 | C→T | E107E (GAG→GAA) | csgE ← | curli production assembly/transport protein CsgE |
| RA | 1,126,409 | T→C | *38* (TAA→TAG) | CXP41_RS05875 ← | YceO family protein |
| RA | 1,128,613 | A→G | intergenic (‑24/+50) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydroorotase |
| RA | 1,132,113 | G→A | R106C (CGC→TGC) | mdtH ← | multidrug efflux MFS transporter MdtH |
| RA | 1,146,507 | +T | pseudogene (1028/1643 nt) | flgK → | flagellar hook‑associated protein FlgK |
| RA | 1,153,112 | T→C | *195* (TAA→TAG) | yceF ← | 7‑methyl‑GTP pyrophosphatase |
| RA | 1,155,792 | A→G | *357* (TAA→TAG) | plsX → | phosphate acyltransferase PlsX |
| RA | 1,156,813 | A→G | *318* (TAA→TAG) | fabH → | beta‑ketoacyl‑ACP synthase III |
| RA | 1,160,148 | G→A | G370D (GGT→GAT) | fabF → | beta‑ketoacyl‑ACP synthase II |
| RA | 1,161,210 | A→G | *270* (TAA→TAG) | pabC → | aminodeoxychorismate lyase |
| RA | 1,175,450 | +G | pseudogene (483/632 nt) | comR ← | TetR family copper‑responsive transcriptional repressor ComR |
| RA | 1,184,770 | T→C | G117G (GGT→GGC) | lolE → | lipoprotein‑releasing ABC transporter permease subunit LolE |
| RA | 1,206,865 | (T)6→5 | pseudogene (1043/1129 nt) | intE ← | site‑specific integrase |
| RA | 1,207,982 | A→G | V51A (GTC→GCC) | xisE ← | excisionase |
| RA | 1,210,325 | A→G | *67* (TAA→TAG) | ymfT → | YdaS family helix‑turn‑helix protein |
| RA | 1,211,261 | A→G | K54E (AAG→GAG) | CXP41_RS06340 → | DUF4222 domain‑containing protein |
| RA | 1,212,832 | A→G | *61* (TAA→TAG) pseudogene (1/408 nt) |
CXP41_RS06350 → CXP41_RS06355 → |
protein YmfR phage portal protein |
| RA | 1,215,618 | T→C | pseudogene (386/405 nt) | tfaP → | tail fiber assembly protein |
| RA | 1,215,634 | +C | pseudogene (402/405 nt) | tfaP → | tail fiber assembly protein |
| RA | 1,218,752 | T→C | intergenic (+75/+28) | CXP41_RS06400 → / ← iraM | isocitrate/isopropylmalate family dehydrogenase/anti‑adapter protein IraM |
| RA | 1,219,333 | G→A | intergenic (‑230/+27) | iraM ← / ← CXP41_RS24360 | anti‑adapter protein IraM/protein YmgK |
| RA | 1,219,803 | T→C | *135* (TAA→TAG) | ycgX ← | DUF1398 domain‑containing protein |
| RA | 1,224,095 | +GA | coding (248/249 nt) | CXP41_RS06440 → | protein YmgC |
| RA | 1,235,822 | G→A | A216T (GCT→ACT) | ycgM → | fumarylacetoacetate hydrolase family protein |
| RA | 1,236,662 | T→C | A277A (GCA→GCG) | hlyE ← | hemolysin HlyE |
| RA | 1,252,698 | A→G | *147* (TAA→TAG) | CXP41_RS06625 → | protein YcgY |
| RA | 1,257,728 | (C)6→5 | pseudogene (210/1072 nt) | dhaK ← | dihydroxyacetone kinase subunit DhaK |
| RA | 1,259,137 | A→G | T325A (ACT→GCT) | dhaR → | dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | 1,267,627 | G→A | I83I (ATC→ATT) | dauA ← | C4‑dicarboxylic acid transporter DauA |
| RA | 1,272,069 | A→G | *419* (TAA→TAG) | hemA → | glutamyl‑tRNA reductase |
| RA | 1,277,472 | A→G | I132T (ATC→ACC) | chaA ← | sodium‑potassium/proton antiporter ChaA |
| RA | 1,281,832 | C→T | E5E (GAG→GAA) | narL ← | two‑component system response regulator NarL |
| RA | 1,292,813 | C→T | noncoding (46/132 nt) | CXP41_RS06830 ← | RtT sRNA |
| RA | 1,292,822 | 2 bp→GG | noncoding (36‑37/132 nt) | CXP41_RS06830 ← | RtT sRNA |
| RA | 1,292,876 | C→T | intergenic (‑18/+29) | CXP41_RS06830 ← / ← CXP41_RS06835 | RtT sRNA/RtT sRNA |
| RA | 1,293,001 | A→G | noncoding (36/132 nt) | CXP41_RS06835 ← | RtT sRNA |
| RA | 1,293,160 | G→A | noncoding (55/132 nt) | CXP41_RS06840 ← | RtT sRNA |
| RA | 1,293,179 | A→G | noncoding (36/132 nt) | CXP41_RS06840 ← | RtT sRNA |
| RA | 1,313,834 | T→C | *418* (TAA→TAG) | kch ← | voltage‑gated potassium channel protein |
| RA | 1,356,015 | (G)8→7 | intergenic (‑158/+211) | fabI ← / ← ycjD | enoyl‑ACP reductase FabI/DUF559 domain‑containing protein |
| RA | 1,359,324 | T→C | N5S (AAC→AGC) *322* (TAA→TAG) |
sapC ← sapB ← |
peptide ABC transporter permease SapC putrescine ABC transporter permease SapB |
| RA | 1,371,754 | T→C | *326* (TAA→TAG) | pspF ← | phage shock protein operon transcriptional activator |
| RA | 1,374,862 | (T)8→9 | intergenic (+40/‑172) | pspE → / → ycjM | thiosulfate sulfurtransferase PspE/glucosylglycerate phosphorylase |
| RA | 1,385,625 | A→G | *220* (TAA→TAG) | pgmB → | beta‑phosphoglucomutase |
| RA | 1,386,607 | A→G | pseudogene (969/1082 nt) | CXP41_RS07340 → | ABC transporter ATP‑binding protein |
| RA | 1,391,913 | A→G | T126A (ACA→GCA) | tyrR → | transcriptional regulator TyrR |
| RA | 1,394,060 | T→C | pseudogene (313/966 nt) | ycjG → | L‑Ala‑D/L‑Glu epimerase |
| RA | 1,394,317 | T→C | pseudogene (570/966 nt) | ycjG → | L‑Ala‑D/L‑Glu epimerase |
| RA | 1,394,713 | A→G | pseudogene (966/966 nt) L235P (CTT→CCT) |
ycjG → mpaA ← |
L‑Ala‑D/L‑Glu epimerase murein tripeptide amidase MpaA |
| RA | 1,397,708 | A→G | *300* (TAA→TAG) | pgrR → | DNA‑binding transcriptional regulator PgrR |
| RA | 1,404,804 | (C)8→7 | pseudogene (252/517 nt) | ogt ← | methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| RA | 1,416,819 | T→C | *412* (TAA→TAG) | intR ← | site‑specific integrase |
| RA | 1,423,205 | A→G | intergenic (‑157/‑285) | kilR ← / → sieB | killing protein KilR/superinfection exclusion B family protein |
| RA | 1,423,978 | A→G | *163* (TAA→TAG) S51S (AGT→AGC) |
sieB → ydaF ← |
superinfection exclusion B family protein YdaF family protein |
| RA | 1,424,163 | A→G | intergenic (‑33/+421) | ydaF ← / ← racR | YdaF family protein/DNA‑binding transcriptional repressor RacR |
| RA | 1,430,799 | A→G | *120* (TAA→TAG) | CXP41_RS07610 → | protein YdaY |
| RA | 1,431,107 | A→G | *67* (TAA→TAG) | CXP41_RS07615 → | hypothetical protein |
| RA | 1,432,694 | T→C | R284R (CGA→CGG) | CXP41_RS07635 ← | IS5‑like element ISKpn26 family transposase |
| RA | 1,432,712 | T→C | P278P (CCA→CCG) | CXP41_RS07635 ← | IS5‑like element ISKpn26 family transposase |
| RA | 1,432,730 | C→A | R272R (CGG→CGT) | CXP41_RS07635 ← | IS5‑like element ISKpn26 family transposase |
| RA | 1,432,781 | T→C | P255P (CCA→CCG) | CXP41_RS07635 ← | IS5‑like element ISKpn26 family transposase |
| RA | 1,432,786 | G→T | H254N (CAT→AAT) | CXP41_RS07635 ← | IS5‑like element ISKpn26 family transposase |
| RA | 1,432,790 | T→C | K252K (AAA→AAG) | CXP41_RS07635 ← | IS5‑like element ISKpn26 family transposase |
| RA | 1,432,800 | C→T | R249K (AGA→AAA) | CXP41_RS07635 ← | IS5‑like element ISKpn26 family transposase |
| RA | 1,432,871 | C→T | G225G (GGG→GGA) | CXP41_RS07635 ← | IS5‑like element ISKpn26 family transposase |
| RA | 1,432,916 | C→A | L210L (CTG→CTT) | CXP41_RS07635 ← | IS5‑like element ISKpn26 family transposase |
| RA | 1,436,701 | C→T | A945V (GCG→GTG) | stfR → | prophage tail fiber N‑terminal domain‑containing protein |
| RA | 1,437,092 | A→G | A1075A (GCA→GCG) | stfR → | prophage tail fiber N‑terminal domain‑containing protein |
| RA | 1,455,211 | T→C | T320A (ACA→GCA) | tynA ← | primary‑amine oxidase |
| RA | 1,459,111 | A→C | G122G (GGA→GGC) | paaA → | 1,2‑phenylacetyl‑CoA epoxidase subunit A |
| RA | 1,463,436 | G→A | A118A (GCG→GCA) | paaG → | 2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase PaaG |
| RA | 1,463,871 | A→G | *263* (TAA→TAG) | paaG → | 2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase PaaG |
| RA | 1,469,308 | A→G | *317* (TAA→TAG) N7D (AAC→GAC) |
paaX → paaY → |
phenylacetic acid degradation operon negative regulatory protein PaaX phenylacetic acid degradation protein PaaY |
| RA | 1,471,815 | C→T | pseudogene (1605/2526 nt) | CXP41_RS07805 → | autotransporter domain‑containing protein |
| RA | 1,472,740 | T→C | *410* (TAA→TAG) | CXP41_RS07810 ← | IS3‑like element IS2 family transposase |
| RA | 1,496,208 | G→A | R163K (AGG→AAG) | cybB → | cytochrome b561 |
| RA | 1,498,038 | G→A | E250E (GAG→GAA) | trg → | methyl‑accepting chemotaxis protein Trg |
| RA | 1,502,127 | G→A | E151E (GAG→GAA) | opgD → | glucan biosynthesis protein OpgD |
| RA | 1,507,944 | A→G | *223* (TAA→TAG) | ydcL → | DUF3313 domain‑containing protein |
| RA | 1,518,287 | C→T | P218S (CCC→TCC) | ydcT → | ABC transporter ATP‑binding protein |
| RA | 1,534,757 | A→G | pseudogene (2037/2037 nt) | CXP41_RS08125 → | RHS repeat protein |
| RA | 1,537,864 | T→C | intergenic (+93/‑7) | CXP41_RS08140 → / → pptA | ISAs1‑like element ISEc5 family transposase/tautomerase PptA |
| RA | 1,549,203 | T→C | pseudogene (1331/1331 nt) | CXP41_RS08190 ← | leucine‑rich repeat domain‑containing protein |
| RA | 1,553,179 | T→C | D320D (GAT→GAC) | fdnG → | formate dehydrogenase‑N subunit alpha |
| RA | 1,554,506 | G→A | D763N (GAT→AAT) | fdnG → | formate dehydrogenase‑N subunit alpha |
| RA | 1,561,931 | T→C | *309* (TAA→TAG) | ddpF ← | ABC transporter ATP‑binding protein |
| RA | 1,564,499 | A→G | G77G (GGT→GGC) | ddpC ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,570,577 | T→C | *461* (TAA→TAG) | dosC ← | diguanylate cyclase DosC |
| RA | 1,572,104 | C→T | intergenic (‑66/+219) | CXP41_RS24370 ← / ← digH | protein YddY/glycoside hydrolase family 10 protein |
| RA | 1,576,151 | T→G | I238I (ATA→ATC) | gadB ← | glutamate decarboxylase |
| RA | 1,576,721 | A→G | D48D (GAT→GAC) | gadB ← | glutamate decarboxylase |
| RA | 1,576,736 | A→G | F43F (TTT→TTC) | gadB ← | glutamate decarboxylase |
| RA | 1,591,100 | T→C | D69G (GAC→GGC) | ydeP ← | acid resistance putative oxidoreductase YdeP |
| RA | 1,598,952 | (C)9→8 | pseudogene (3955/5423 nt) | CXP41_RS08400 ← | ECSE_1600 family autotransporter |
| RA | 1,603,437 | T→C | *531* (TAA→TAG) | lsrK ← | autoinducer‑2 kinase |
| RA | 1,619,609 | T→C | intergenic (‑86/‑15) | sad ← / → yneJ | succinate‑semialdehyde dehydrogenase/LysR family transcriptional regulator |
| RA | 1,620,861 | T→C | A93A (GCT→GCC) | yneK → | putative protein YneK |
| RA | 1,623,038 | A→G | *397* (TAA→TAG) | ydeA → | L‑arabinose MFS transporter |
| RA | 1,624,777 | A→G | *128* (TAA→TAG) | marA → | MDR efflux pump AcrAB transcriptional activator MarA |
| RA | 1,625,027 | A→G | *73* (TAA→TAG) | marB → | multiple antibiotic resistance protein MarB |
| RA | 1,626,362 | A→G | N71D (AAC→GAC) | ydeE → | efflux MFS transporter YdeE |
| RA | 1,629,176 | (T)7→8 | pseudogene (141/392 nt) | ydeI ← | YdeI family stress tolerance OB fold protein |
| RA | 1,631,644 | T→C | I186V (ATT→GTT) | dcp ← | peptidyl‑dipeptidase Dcp |
| RA | 1,632,444 | C→T | L37L (CTG→TTG) | ydfG → | bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/3‑hydroxypropionate dehydrogenase YdfG |
| RA | 1,635,805 | G→A | intergenic (‑73/+16) | ydfI ← / ← ydfJ | mannitol dehydrogenase family protein/MHS family MFS transporter |
| RA | 1,643,849 | T→C | *166* (TAA→TAG) | rzpQ ← | DUF2514 domain‑containing protein |
| RA | 1,653,860 | A→G | *73* (TAA→TAG) | CXP41_RS08750 → | protein YdfC |
| RA | 1,656,356 | A→G | pseudogene (696/696 nt) | CXP41_RS08775 → | IS3‑like element IS2 family transposase |
| RA | 1,659,876 | C→T | A29T (GCG→ACG) | rspA ← | starvation‑sensing protein RspA |
| RA | 1,660,166 | T→C | K109R (AAG→AGG) | ynfA ← | YnfA family protein |
| RA | 1,660,178 | +C | coding (314/351 nt) | ynfA ← | YnfA family protein |
| RA | 1,661,562 | A→G | *187* (TAA→TAG) | speG → | spermidine N1‑acetyltransferase |
| RA | 1,668,914 | C→T | T163I (ACA→ATA) | ynfH → | dimethyl sulfoxide reductase anchor subunit |
| RA | 1,669,938 | A→G | *205* (TAA→TAG) | dmsD → | Tat proofreading chaperone DmsD |
| RA | 1,675,399 | A→G | R295G (AGA→GGA) | ynfM → | MFS transporter |
| RA | 1,678,164 | (T)8→7 | pseudogene (157/367 nt) | mdtJ ← | multidrug/spermidine efflux SMR transporter subunit MdtJ |
| RA | 1,690,360 | (C)5→6 | pseudogene (1047/1403 nt) | fumC ← | class II fumarate hydratase |
| RA | 1,696,010 | A→G | Q447Q (CAA→CAG) | ydgA → | YdgA family protein |
| RA | 1,701,269 | +A | intergenic (‑380/+10) | uidA ← / ← uidR | beta‑glucuronidase/DNA‑binding transcriptional regulator UidR |
| RA | 1,705,019 | (T)6→5 | pseudogene (848/1594 nt) | malX → | PTS maltose transporter subunit IICB |
| RA | 1,713,981 | C→T | P8S (CCC→TCC) | rsxD → | electron transport complex subunit RsxD |
| RA | 1,717,337 | (C)7→6 | intergenic (+361/‑251) | nth → / → dtpA | endonuclease III/dipeptide/tripeptide permease DtpA |
| RA | 1,723,877 | A→G | L182P (CTG→CCG) | anmK ← | anhydro‑N‑acetylmuramic acid kinase |
| RA | 1,731,441 | A→G | *200* (TAA→TAG) | nemR → | DNA‑binding transcriptional regulator NemR |
| RA | 1,738,522 | A→G | *1539* (TAA→TAG) | lhr → | ATP‑dependent helicase |
| RA | 1,740,303 | C→T | A36V (GCC→GTC) | sodB → | superoxide dismutase [Fe] |
| RA | 1,747,394 | A→G | intergenic (+14/+26) | cfa → / ← ribE | cyclopropane fatty acyl phospholipid synthase/riboflavin synthase |
| RA | 1,749,559 | T→C | G428G (GGT→GGC) | mdtK → | multidrug efflux MATE transporter MdtK |
| RA | 1,761,825 | A→G | T437A (ACT→GCT) | pykF → | pyruvate kinase PykF |
| RA | 1,762,540 | T→C | pseudogene (1000/1000 nt) | ldtE ← | L,D‑transpeptidase LdtE |
| JC | 1,762,571 | +CTGGT | pseudogene (969/1000 nt) | ldtE ← | L,D‑transpeptidase LdtE |
| RA | 1,764,495 | (C)6→5 | pseudogene (844/1222 nt) | sufS ← | cysteine desulfurase SufS |
| RA | 1,766,333 | A→G | C92R (TGT→CGT) | sufD ← | Fe‑S cluster assembly protein SufD |
| RA | 1,768,801 | +G | pseudogene (23/1487 nt) | sufB ← | Fe‑S cluster assembly protein SufB |
| RA | 1,768,832 | T→C | *123* (TAA→TAG) | sufA ← | Fe‑S cluster assembly scaffold SufA |
| JC | 1,774,293 | (G)10→7 | coding (406‑408/1116 nt) | ydiK → | AI‑2E family transporter YdiK |
| RA | 1,786,781 | G→C | G190G (GGG→GGC) | ydiS → | FAD‑dependent oxidoreductase |
| RA | 1,793,095 | A→G | *278* (TAA→TAG) | ppsR → | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR |
| RA | 1,794,621 | A→G | *64* (TAA→TAG) | hemP → | hemin uptake protein HemP |
| RA | 1,797,084 | T→C | *155* (TAA→TAG) | nlpC ← | NlpC/P60 family protein |
| RA | 1,798,989 | T→C | *327* (TAA→TAG) | btuC ← | vitamin B12 ABC transporter permease BtuC |
| RA | 1,804,700 | C→T | K39K (AAG→AAA) | rpmI ← | 50S ribosomal protein L35 |
| RA | 1,808,384 | A→G | pseudogene (474/1900 nt) | espL1 → | type III secretion system effector EspL1 |
| RA | 1,824,386 | G→A | G79G (GGC→GGT) | chbA ← | PTS N,N'‑diacetylchitobiose transporter subunit IIA |
| RA | 1,826,683 | (A)7→8 | intergenic (‑247/+51) | chbB ← / ← osmE | PTS N,N'‑diacetylchitobiose transporter subunit IIB/osmotically‑inducible lipoprotein OsmE |
| RA | 1,831,362 | C→T | E126E (GAG→GAA) | astE ← | succinylglutamate desuccinylase |
| RA | 1,838,927 | A→G | *237* (TAA→TAG) | ydjX → | TVP38/TMEM64 family protein |
| RA | 1,846,713 | A→G | *136* (TAA→TAG) I80T (ATT→ACT) |
nudG → ynjH ← |
CTP pyrophosphohydrolase YnjH family protein |
| RA | 1,855,625 | +C | intergenic (+116/‑50) | sppA → / → ansA | signal peptide peptidase SppA/asparaginase |
| RA | 1,867,449 | G→A | intergenic (‑205/‑137) | msrB ← / → gapA | peptide‑methionine (R)‑S‑oxide reductase MsrB/glyceraldehyde‑3‑phosphate dehydrogenase |
| RA | 1,867,819 | C→T | R78R (CGC→CGT) | gapA → | glyceraldehyde‑3‑phosphate dehydrogenase |
| RA | 1,873,836 | (T)5→6 | pseudogene (67/1283 nt) | yeaH → | YeaH/YhbH family protein |
| RA | 1,878,892 | T→C | *35* (TAA→TAG) | CXP41_RS09925 ← | small membrane protein YoaI |
| RA | 1,879,612 | A→G | *149* (TAA→TAG) pseudogene (778/821 nt) |
yeaL → nimR ← |
DUF441 domain‑containing protein DNA‑binding transcriptional regulator NimR |
| RA | 1,879,869 | (C)5→6 | pseudogene (521/821 nt) | nimR ← | DNA‑binding transcriptional regulator NimR |
| RA | 1,886,276 | A→G | V116A (GTG→GCG) | dmlR ← | DNA‑binding transcriptional regulator DmlR |
| RA | 1,891,623 | A→G | *322* (TAA→TAG) | yeaX → | carnitine monooxygenase subunit YeaX |
| RA | 1,897,215 | G→A | S278S (AGC→AGT) | yoaA ← | ATP‑dependent DNA helicase |
| RA | 1,910,574 | G→A | G25D (GGT→GAT) | mntP → | manganese efflux pump MntP |
| RA | 1,910,618 | A→G | S40G (AGC→GGC) | mntP → | manganese efflux pump MntP |
| RA | 1,915,287 | C→T | P67S (CCC→TCC) | yebQ → | MFS transporter |
| RA | 1,925,019 | (T)8→7 | intergenic (+63/‑18) | yebT → / → rsmF | lipid‑binding membrane homeostasis protein YebT/16S rRNA (cytosine(1407)‑C(5))‑methyltransferase RsmF |
| RA | 1,930,910 | A→G | *219* (TAA→TAG) | yobB → | carbon‑nitrogen hydrolase family protein YobB |
| RA | 1,931,596 | A→G | *221* (TAA→TAG) D686D (GAT→GAC) |
exoX → ptrB ← |
exodeoxyribonuclease X oligopeptidase B |
| RA | 1,936,791 | (G)6→5 | pseudogene (1097/1180 nt) | purT → | formate‑dependent phosphoribosylglycinamide formyltransferase |
| RA | 1,944,488 | C→T | S174N (AGC→AAC) | lpxM ← | lauroyl‑Kdo(2)‑lipid IV(A) myristoyltransferase |
| RA | 1,947,808 | A→G | E111G (GAG→GGG) | znuC → | zinc ABC transporter ATP‑binding protein ZnuC |
| RA | 1,952,382 | A→G | S195S (AGT→AGC) | yebC ← | YebC/PmpR family DNA‑binding transcriptional regulator |
| RA | 1,955,375 | (C)6→5 | intergenic (‑38/‑273) | aspS ← / → yecD | aspartate‑‑tRNA ligase/hydrolase |
| RA | 1,957,477 | A→G | *132* (TAA→TAG) | yecN → | MAPEG family protein |
| RA | 1,969,513 | A→G | L118L (CTT→CTC) | flhA ← | flagellar biosynthesis protein FlhA |
| RA | 1,984,228 | T→C | *475* (TAA→TAG) | otsA ← | alpha,alpha‑trehalose‑phosphate synthase |
| RA | 2,002,534 | T→C | *329* (TAA→TAG) | dcyD ← | D‑cysteine desulfhydrase |
| RA | 2,016,041 | T→C | pseudogene (351/1129 nt) | CXP41_RS10705 ← | DUF5503 domain‑containing protein |
| RA | 2,016,740 | T→C | *105* (TAA→TAG) | fliE ← | flagellar hook‑basal body complex protein FliE |
| RA | 2,020,135 | A→G | L76L (CTA→CTG) | fliH → | flagellar assembly protein FliH |
| RA | 2,025,541 | A→G | *138* (TAA→TAG) | fliN → | flagellar motor switch protein FliN |
| RA | 2,026,646 | A→G | *246* (TAA→TAG) | fliP → | flagellar type III secretion system pore protein FliP |
| RA | 2,026,925 | A→G | *90* (TAA→TAG) | fliQ → | flagellar biosynthesis protein FliQ |
| RA | 2,033,768 | (C)5→6 | pseudogene (190/920 nt) | yedA → | drug/metabolite exporter YedA |
| RA | 2,038,575 | A→G | pseudogene (486/1193 nt) | ompC → | porin OmpC |
| RA | 2,053,375 | T→C | S1467P (TCG→CCG) | yeeJ → | inverse autotransporter adhesin YeeJ |
| RA | 2,064,003 | T→C | *317* (TAA→TAG) | cbl ← | HTH‑type transcriptional regulator Cbl |
| RA | 2,072,991 | T→C | *410* (TAA→TAG) | CXP41_RS11040 ← | IS3‑like element IS2 family transposase |
| RA | 2,077,264 | C→T | R563W (CGG→TGG) | agn43 → | autotransporter adhesin Ag43 |
| RA | 2,088,812 | A→G | G251G (GGT→GGC) | tsuA ← | thiosulfate utilization transporter TsuA/YeeE |
| RA | 2,089,870 | G→A | P411L (CCG→CTG) | plaP ← | putrescine/proton symporter PlaP |
| RA | 2,094,085 | A→G | *17* (TAA→TAG) | hisL → | his operon leader peptide |
| RA | 2,098,123 | A→T | D206V (GAT→GTT) | hisB → | bifunctional histidinol‑phosphatase/imidazoleglycerol‑phosphate dehydratase HisB |
| RA | 2,103,276 | A→G | V126A (GTG→GCG) | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,105,896 | A→G | intergenic (‑108/+38) | wbbL ← / ← CXP41_RS11235 | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL/IS5‑like element IS5 family transposase |
| RA | 2,108,533 | T→C | I6V (ATC→GTC) *197* (TAA→TAG) |
wbbK ← wbbJ ← |
glycosyltransferase family 1 protein DapH/DapD/GlmU‑related protein |
| RA | 2,118,541 | T→C | *465* (TAA→TAG) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | 2,119,946 | T→C | *407* (TAA→TAG) | wcaL ← | colanic acid biosynthesis glycosyltransferase WcaL |
| RA | 2,122,203 | A→G | C81R (TGT→CGT) | wcaK ← | colanic acid biosynthesis pyruvyl transferase WcaK |
| RA | 2,134,892 | T→C | N9S (AAC→AGC) *406* (TAA→TAG) |
wcaD ← wcaC ← |
colanic acid polymerase WcaD colanic acid biosynthesis glycosyltransferase WcaC |
| RA | 2,135,706 | C→T | G135D (GGC→GAC) | wcaC ← | colanic acid biosynthesis glycosyltransferase WcaC |
| RA | 2,143,798 | T→C | *618* (TAA→TAG) | asmA ← | outer membrane assembly protein AsmA |
| RA | 2,154,002 | T→G | G341G (GGA→GGC) | yegI ← | protein kinase YegI |
| RA | 2,167,134 | A→G | N74D (AAT→GAT) | baeS → | two‑component system sensor histidine kinase BaeS |
| RA | 2,169,037 | A→G | *241* (TAA→TAG) | baeR → | two‑component system response regulator BaeR |
| RA | 2,173,732 | T→C | pseudogene (477/477 nt) | CXP41_RS11545 ← | DeoR/GlpR family DNA‑binding transcription regulator |
| RA | 2,175,437 | A→G | *388* (TAA→TAG) | CXP41_RS11550 → | IS3‑like element IS3 family transposase |
| RA | 2,183,367 | C→T | S170S (AGC→AGT) | yegT → | nucleoside permease |
| RA | 2,186,072 | T→C | L314L (TTA→CTA) *249* (TAA→TAG) |
yegV → yegW ← |
carbohydrate kinase family protein GntR family transcriptional regulator |
| RA | 2,186,098 | A→G | *322* (TAA→TAG) L241L (TTA→CTA) |
yegV → yegW ← |
carbohydrate kinase family protein GntR family transcriptional regulator |
| RA | 2,193,631 | T→C | A439A (GCA→GCG) | yehB ← | fimbrial biogenesis outer membrane usher protein |
| RA | 2,204,490 | (A)7→8 | pseudogene (175/3632 nt) | CXP41_RS11705 → | DUF4132 domain‑containing protein |
| RA | 2,214,980 | A→G | pseudogene (1845/2001 nt) | yehQ → | C69 family dipeptidase |
| RA | 2,218,374 | (C)5→6 | pseudogene (306/1685 nt) | btsS ← | two‑component regulatory system sensor histidine kinase BtsS |
| RA | 2,222,242 | T→C | A117A (GCA→GCG) | yehY ← | glycine betaine ABC transporter permease YehY |
| RA | 2,224,824 | A→G | C401R (TGT→CGT) | bglX ← | beta‑glucosidase BglX |
| RA | 2,229,079 | T→C | *196* (TAA→TAG) | yohC ← | Yip1 family protein |
| RA | 2,230,544 | T→C | *254* (TAA→TAG) | yohF ← | SDR family oxidoreductase |
| RA | 2,237,632 | A→G | *240* (TAA→TAG) | sanA → | outer membrane permeability protein SanA |
| RA | 2,244,790 | (C)6→5 | pseudogene (915/1042 nt) | galS ← | HTH‑type transcriptional regulator GalS |
| RA | 2,267,514 | C→T | V6V (GTG→GTA) | fruB ← | fused PTS fructose transporter subunit IIA/HPr protein |
| RA | 2,270,049 | C→T | R188R (CGC→CGT) | yeiP → | elongation factor P‑like protein YeiP |
| RA | 2,278,202 | G→A | K601K (AAG→AAA) | yejA → | extracellular solute‑binding protein |
| RA | 2,278,214 | A→G | *605* (TAA→TAG) | yejA → | extracellular solute‑binding protein |
| RA | 2,280,334 | A→G | *342* (TAA→TAG) | yejE → | ABC transporter permease |
| RA | 2,292,596 | (C)6→7 | pseudogene (361/2531 nt) | yejO ← | autotransporter YejO |
| RA | 2,293,062 | A→G | intergenic (‑106/+38) | yejO ← / ← CXP41_RS12140 | autotransporter YejO/IS5‑like element IS5 family transposase |
| RA | 2,296,008 | C→T | G146G (GGG→GGA) | ccmH ← | cytochrome c‑type biogenesis thiol:disulfide oxidoreductase CcmH |
| RA | 2,320,195 | A→G | *891* (TAA→TAG) | rcsD → | phosphotransferase RcsD |
| RA | 2,321,062 | T→C | *950* (TAA→TAG) | rcsC ← | two‑component system sensor histidine kinase RcsC |
| RA | 2,322,054 | A→G | C620R (TGT→CGT) | rcsC ← | two‑component system sensor histidine kinase RcsC |
| RA | 2,338,371 | T→C | *208* (TAA→TAG) | yfaT ← | DUF1175 domain‑containing protein |
| RA | 2,354,197 | G→A | L284L (CTG→TTG) | glpQ ← | glycerophosphodiester phosphodiesterase |
| RA | 2,362,198 | A→G | V228A (GTG→GCG) | yfaU ← | 2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| RA | 2,374,054 | C→T | R661* (CGA→TGA) T2M (ACG→ATG) |
arnA → arnD → |
bifunctional UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronic acid oxidase ArnA 4‑deoxy‑4‑formamido‑L‑arabinose‑ phosphoundecaprenol deformylase |
| RA | 2,383,383 | T→C | *432* (TAA→TAG) | menF ← | isochorismate synthase MenF |
| RA | 2,385,598 | C→T | intergenic (‑20/‑45) | elaA ← / → rbn | GNAT family N‑acetyltransferase/ribonuclease BN |
| RA | 2,415,086 | G→C | T101S (ACC→AGC) | yfbS ← | SLC13 family permease |
| RA | 2,418,734 | C→T | intergenic (+27/‑48) | ackA → / → pta | acetate kinase/phosphate acetyltransferase |
| RA | 2,420,798 | 2 bp→CT | coding (2017‑2018/2145 nt) | pta → | phosphate acetyltransferase |
| RA | 2,442,583 | C→T | A200V (GCG→GTG) | flk → | flagella biosynthesis regulator Flk |
| RA | 2,453,263 | T→C | *274* (TAA→TAG) | yfcO ← | fimbrial adhesin YfcO |
| RA | 2,457,300 | T→C | pseudogene (1737/2646 nt) | yfcU ← | fimbrial usher protein YfcU |
| RA | 2,466,923 | (C)8→9 | intergenic (+242/‑123) | fadL → / → CXP41_RS12955 | long‑chain fatty acid transporter FadL/protein YfdF |
| RA | 2,472,140 | C→T | A84A (GCC→GCT) | yfdG → | bactoprenol glucosyl transferase |
| RA | 2,475,139 | A→G | pseudogene (291/291 nt) L138P (CTT→CCT) |
CXP41_RS13005 → yfdK ← |
tail fiber assembly protein tail fiber assembly protein |
| RA | 2,482,126 | G→A | V82V (GTG→GTA) | dsdX → | D‑serine transporter DsdX |
| RA | 2,488,932 | (C)7→6 | pseudogene (525/3595 nt) | evgS → | acid‑sensing system histidine kinase EvgS |
| RA | 2,498,985 | C→T | H85Y (CAT→TAT) | ypdI → | colanic acid biosynthesis lipoprotein YpdI |
| RA | 2,499,008 | A→G | *92* (TAA→TAG) | ypdI → | colanic acid biosynthesis lipoprotein YpdI |
| RA | 2,499,085 | T→C | *81* (TAA→TAG) | yfdY ← | YfdY family protein |
| RA | 2,514,921 | A→G | *419* (TAA→TAG) | yfeO → | ion channel protein |
| RA | 2,515,503 | T→C | *413* (TAA→TAG) | mntH ← | Nramp family divalent metal transporter |
| RA | 2,525,628 | T→C | *295* (TAA→TAG) | xapR ← | DNA‑binding transcriptional regulator XapR |
| RA | 2,525,887 | C→T | G209D (GGT→GAT) | xapR ← | DNA‑binding transcriptional regulator XapR |
| JC | 2,529,951 | +GTATGAATT | intergenic (+25/+5) | CXP41_RS13300 → / ← yfeR | outer membrane protein OmpK/LysR family transcriptional regulator |
| RA | 2,529,956 | T→C | *309* (TAA→TAG) | yfeR ← | LysR family transcriptional regulator |
| RA | 2,538,057 | C→T | intergenic (+10/‑35) | ptsH → / → ptsI | phosphocarrier protein Hpr/phosphoenolpyruvate‑protein phosphotransferase PtsI |
| RA | 2,556,120 | A→G | I15I (ATT→ATC) | ypeA ← | GNAT family acetyltransferase |
| RA | 2,578,161 | A→G | D57D (GAT→GAC) | eutT ← | ethanolamine utilization cob(I)yrinic acid a,c‑diamide adenosyltransferase EutT |
| RA | 2,593,561 | T→C | I647I (ATT→ATC) | acrD → | multidrug efflux RND transporter permease AcrD |
| RA | 2,595,629 | A→G | *119* (TAA→TAG) | yffB → | ArsC family reductase |
| RA | 2,599,253 | C→T | Q211Q (CAG→CAA) | tmcA ← | tRNA cytosine(34) acetyltransferase TmcA |
| RA | 2,604,636 | (C)6→5 | pseudogene (133/472 nt) | bcp → | thioredoxin‑dependent thiol peroxidase |
| JC | 2,618,640 | +TCC | coding (680/846 nt) | focB → | formate transporter FocB |
| RA | 2,622,099 | T→C | *234* (TAA→TAG) | hda ← | DnaA inactivator Hda |
| RA | 2,625,331 | G→A | E37E (GAG→GAA) | purM → | phosphoribosylformylglycinamidine cyclo‑ligase |
| RA | 2,633,505 | A→G | *64* (TAA→TAG) | yfgG → | YfgG family protein |
| RA | 2,641,319 | T→C | H21R (CAT→CGT) | der ← | ribosome biogenesis GTPase Der |
| RA | 2,649,037 | T→C | *771* (TAA→TAG) | pbpC ← | peptidoglycan glycosyltransferase PbpC |
| RA | 2,654,514 | T→C | M600V (ATG→GTG) | yfhM ← | alpha2‑macroglobulin |
| RA | 2,659,791 | C→T | A198T (GCT→ACT) | pepB ← | aminopeptidase PepB |
| RA | 2,677,792 | A→G | *141* (TAA→TAG) | yphA → | DoxX family protein |
| RA | 2,688,995 | A→G | G179G (GGT→GGC) | glyA ← | serine hydroxymethyltransferase |
| RA | 2,689,585 | C→T | intergenic (‑54/‑274) | glyA ← / → hmpA | serine hydroxymethyltransferase/NO‑inducible flavohemoprotein |
| RA | 2,689,934 | A→G | T26A (ACC→GCC) | hmpA → | NO‑inducible flavohemoprotein |
| RA | 2,701,939 | T→C | *212* (TAA→TAG) | yfhb ← | phosphatidylglycerophosphatase C |
| RA | 2,710,506 | T→C | S215G (AGC→GGC) | lepA ← | translation elongation factor 4 |
| RA | 2,717,592 | C→T | R225W (CGG→TGG) | srmB → | ATP‑dependent RNA helicase SrmB |
| RA | 2,727,089 | A→G | A113A (GCA→GCG) | pssA → | CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase |
| RA | 2,728,472 | T→C | H107H (CAT→CAC) *433* (TAA→TAG) |
yfiM → kgtP ← |
YfiM family lipoprotein alpha‑ketoglutarate permease |
| RA | 2,741,519 | A→G | *114* (TAA→TAG) | raiA → | ribosome‑associated translation inhibitor RaiA |
| RA | 2,746,986 | A→G | N194D (AAT→GAT) | dgcN → | diguanylate cyclase DgcN |
| RA | 2,769,852 | +C | intergenic (‑52/‑89) | yfjM ← / → rnlA | DUF1524 domain‑containing protein/type II toxin‑antitoxin system toxin mRNA endoribonuclease RnlA |
| RA | 2,771,469 | (C)8→7 | intergenic (+91/‑265) | rnlB → / → yfjP | type II toxin‑antitoxin system antitoxin RnlB/GTPase family protein |
| RA | 2,773,510 | A→G | *274* (TAA→TAG) | yfjQ → | DUF932 domain‑containing protein |
| RA | 2,773,671 | (C)5→6 | intergenic (+161/‑55) | yfjQ → / → yfjR | DUF932 domain‑containing protein/WYL domain‑containing protein |
| RA | 2,774,427 | A→G | *234* (TAA→TAG) | yfjR → | WYL domain‑containing protein |
| RA | 2,785,155 | C→T | pseudogene (1594/4580 nt) | ypjA ← | adhesin‑like autotransporter YpjA/EhaD |
| RA | 2,786,415 | +C | pseudogene (334/4580 nt) | ypjA ← | adhesin‑like autotransporter YpjA/EhaD |
| RA | 2,788,551 | T→C | pseudogene (483/1374 nt) | CXP41_RS24250 ← | DUF5507 domain‑containing protein |
| RA | 2,790,751 | A→G | pseudogene (333/2252 nt) | CXP41_RS24390 → | alpha‑amylase family glycosyl hydrolase |
| RA | 2,790,767 | +C | pseudogene (349/2252 nt) | CXP41_RS24390 → | alpha‑amylase family glycosyl hydrolase |
| RA | 2,791,455 | A→G | pseudogene (1037/2252 nt) | CXP41_RS24390 → | alpha‑amylase family glycosyl hydrolase |
| RA | 2,792,259 | A→G | pseudogene (1841/2252 nt) | CXP41_RS24390 → | alpha‑amylase family glycosyl hydrolase |
| RA | 2,798,036 | A→G | *427* (TAA→TAG) | gabT → | 4‑aminobutyrate‑‑2‑oxoglutarate transaminase |
| RA | 2,800,167 | T→C | V158A (GTG→GCG) | csiR → | DNA‑binding transcriptional regulator CsiR |
| RA | 2,800,358 | T→C | *150* (TAA→TAG) | kbp ← | potassium binding protein Kbp |
| RA | 2,800,937 | C→T | C38Y (TGT→TAT) | yqaE ← | YqaE/Pmp3 family membrane protein |
| RA | 2,804,496 | A→G | *110* (TAA→TAG) | ygaM → | DUF883 domain‑containing protein |
| RA | 2,818,239 | T→C | *172* (TAA→TAG) | luxS ← | S‑ribosylhomocysteine lyase |
| RA | 2,828,512 | T→C | N362S (AAC→AGC) | mltB ← | lytic murein transglycosylase B |
| RA | 2,828,516 | +G | coding (1081/1152 nt) | mltB ← | lytic murein transglycosylase B |
| RA | 2,831,371 | A→G | *320* (TAA→TAG) | srlE → | PTS glucitol/sorbitol transporter subunit IIB |
| RA | 2,839,065 | A→G | *378* (TAA→TAG) | norW → | NADH:flavorubredoxin reductase NorW |
| RA | 2,843,404 | A→T | intergenic (‑120/‑140) | ascG ← / → ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| RA | 2,846,434 | A→G | *475* (TAA→TAG) | ascB → | 6‑phospho‑beta‑glucosidase AscB |
| RA | 2,846,593 | T→C | *157* (TAA→TAG) | hycI ← | hydrogenase maturation peptidase HycI |
| RA | 2,855,893 | A→G | *291* (TAA→TAG) S4G (AGC→GGC) |
hypB → hypC → |
hydrogenase nickel incorporation protein HypB hydrogenase 3 maturation protein HypC |
| RA | 2,858,752 | +T | pseudogene (395/2078 nt) | flhA → | formate hydrogenlyase transcriptional activator FlhA |
| RA | 2,860,472 | T→C | *118* (TAA→TAG) | ygbA ← | nitrous oxide‑stimulated promoter family protein |
| RA | 2,862,725 | A→G | *219* (TAA→TAG) | pphB → | protein‑serine/threonine phosphatase |
| RA | 2,862,734 | +T | intergenic (+9/+41) | pphB → / ← ygbI | protein‑serine/threonine phosphatase/DNA‑binding transcriptional repressor YgbI |
| RA | 2,879,252 | A→G | T122A (ACC→GCC) | iap → | alkaline phosphatase isozyme conversion aminopeptidase |
| RA | 2,896,236 | A→G | *424* (TAA→TAG) T4A (ACC→GCC) |
ygcN → ygcO → |
FAD‑dependent oxidoreductase ferredoxin family protein |
| JC | 2,896,268 | +CAC | coding (42/258 nt) | ygcO → | ferredoxin family protein |
| RA | 2,904,848 | A→G | G216G (GGA→GGG) | ygcE → | FGGY‑family carbohydrate kinase |
| RA | 2,907,837 | C→T | intergenic (‑114/‑25) | queE ← / → CXP41_RS15220 | 7‑carboxy‑7‑deazaguanine synthase QueE/cell envelope stress response protein YqcG |
| RA | 2,913,061 | T→C | *112* (TAA→TAG) | mazF ← | endoribonuclease MazF |
| RA | 2,913,722 | T→C | *745* (TAA→TAG) | relA ← | GTP pyrophosphokinase |
| RA | 2,916,004 | T→C | *434* (TAA→TAG) | rlmD ← | 23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD |
| RA | 2,917,410 | T→C | S17P (TCG→CCG) | barA → | two‑component sensor histidine kinase BarA |
| RA | 2,938,222 | A→G | S112G (AGC→GGC) | fucI → | L‑fucose isomerase |
| RA | 2,939,236 | C→T | L450F (CTC→TTC) | fucI → | L‑fucose isomerase |
| RA | 2,940,107 | G→A | G112D (GGC→GAC) | fucK → | L‑fuculokinase |
| RA | 2,960,614 | C→T | A192A (GCG→GCA) | ptrA ← | pitrilysin |
| RA | 2,964,746 | T→C | *108* (TAA→TAG) | ppdC ← | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein |
| RA | 2,968,493 | T→C | *749* (TAA→TAG) | ptsP ← | phosphoenolpyruvate‑‑protein phosphotransferase |
| RA | 2,972,656 | A→G | *230* (TAA→TAG) | mutH → | DNA mismatch repair endonuclease MutH |
| RA | 2,982,248 | T→C | V308A (GTT→GCT) *231* (TAA→TAG) |
lysR → ygeA ← |
DNA‑binding transcriptional regulator LysR amino acid racemase |
| RA | 2,985,593 | T→C | *279* (TAA→TAG) | kduI ← | 5‑dehydro‑4‑deoxy‑D‑glucuronate isomerase |
| RA | 2,986,326 | C→T | C35Y (TGC→TAC) | kduI ← | 5‑dehydro‑4‑deoxy‑D‑glucuronate isomerase |
| RA | 2,986,716 | T→C | *394* (TAA→TAG) | yqeF ← | acetyl‑CoA C‑acetyltransferase |
| RA | 2,996,161 | A→G | *73* (TAA→TAG) | CXP41_RS15615 → | protein YgeI |
| RA | 2,996,720 | A→G | *159* (TAA→TAG) | CXP41_RS15620 → | lytic transglycosylase domain‑containing protein |
| RA | 2,997,537 | (A)8→7 | intergenic (‑140/+83) | CXP41_RS15625 ← / ← CXP41_RS24400 | response regulator transcription factor/hypothetical protein |
| RA | 2,997,620 | T→C | *144* (TAA→TAG) | CXP41_RS24400 ← | hypothetical protein |
| RA | 2,998,678 | T→C | *410* (TAA→TAG) | CXP41_RS15650 ← | IS3‑like element IS2 family transposase |
| RA | 2,999,995 | T→C | intergenic (‑89/+3) | CXP41_RS15650 ← / ← CXP41_RS15660 | IS3‑like element IS2 family transposase/glycoside hydrolase family 15 protein |
| RA | 3,014,858 | +G | intergenic (+159/+61) | arcC → / ← yqeB | carbamate kinase/selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
| RA | 3,016,563 | +C | intergenic (‑19/+28) | yqeB ← / ← yqeC | selenium‑dependent molybdenum cofactor biosynthesis protein YqeB/selenium cofactor biosynthesis protein YqeC |
| RA | 3,016,591 | T→C | *257* (TAA→TAG) | yqeC ← | selenium cofactor biosynthesis protein YqeC |
| RA | 3,018,042 | A→G | *193* (TAA→TAG) | mocA → | molybdenum cofactor cytidylyltransferase |
| RA | 3,034,336 | A→G | S222S (TCA→TCG) | uacT → | urate/proton symporter UacT |
| RA | 3,037,850 | C→T | A246T (GCG→ACG) | prfB ← | peptide chain release factor 2 |
| RA | 3,038,677 | T→C | *578* (TAA→TAG) | recJ ← | single‑stranded‑DNA‑specific exonuclease RecJ |
| RA | 3,058,577 | A→G | P29P (CCA→CCG) | fau → | 5‑formyltetrahydrofolate cyclo‑ligase |
| RA | 3,061,597 | C→T | G11G (GGG→GGA) | rpiA ← | ribose‑5‑phosphate isomerase RpiA |
| RA | 3,063,506 | G→A | S118N (AGC→AAC) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,070,477 | T→C | *212* (TAA→TAG) | argO ← | arginine exporter ArgO |
| RA | 3,081,156 | C→T | S3N (AGC→AAC) | cmtA ← | PTS mannitol transporter subunit IICB |
| RA | 3,084,181 | C→T | intergenic (‑242/‑36) | tkt ← / → loiP | transketolase/metalloprotease LoiP |
| RA | 3,084,342 | C→T | D42D (GAC→GAT) | loiP → | metalloprotease LoiP |
| RA | 3,085,924 | A→G | C60R (TGT→CGT) | speB ← | agmatinase |
| RA | 3,087,765 | G→A | P151S (CCC→TCC) | speA ← | biosynthetic arginine decarboxylase |
| RA | 3,090,561 | C→T | intergenic (+397/‑27) | metK → / → galP | methionine adenosyltransferase/galactose/proton symporter |
| RA | 3,096,538 | C→T | A283T (GCA→ACA) | yggR ← | type IV pilus twitching motility protein PilT |
| RA | 3,098,977 | A→G | *97* (TAA→TAG) | yggU → | DUF167 family protein YggU |
| RA | 3,103,344 | (C)8→7 | pseudogene (585/721 nt) | yggN ← | DUF2884 domain‑containing protein |
| RA | 3,106,370 | A→G | *351* (TAA→TAG) | mutY → | A/G‑specific adenine glycosylase |
| RA | 3,119,176 | T→C | T748A (ACA→GCA) | sslE ← | lipoprotein metalloprotease SslE |
| RA | 3,131,341 | A→G | *255* (TAA→TAG) | glcC → | transcriptional regulator GlcC |
| RA | 3,131,886 | A→G | I200T (ATC→ACC) | yghO ← | protein YghO |
| RA | 3,133,646 | T→C | intergenic (+147/+3) | CXP41_RS16295 → / ← yghQ | IS5‑like element IS5 family transposase/lipopolysaccharide biosynthesis protein |
| RA | 3,137,115 | +T | coding (680/744 nt) | yghT → | dTMP kinase |
| RA | 3,137,127 | A→G | N231S (AAT→AGT) | yghT → | dTMP kinase |
| RA | 3,142,598 | C→T | G9S (GGC→AGC) | hypA ← | hydrogenase maturation nickel metallochaperone HypA |
| RA | 3,164,612 | A→G | L121S (TTG→TCG) | ftsP ← | cell division protein FtsP |
| RA | 3,174,183 | T→C | *111* (TAA→TAG) | ygiZ ← | DUF2645 family protein |
| RA | 3,179,025 | A→G | I38T (ATC→ACC) | cpdA ← | 3',5'‑cyclic‑AMP phosphodiesterase |
| RA | 3,179,162 | T→C | *141* (TAA→TAG) | yqiB ← | DUF1249 family protein |
| RA | 3,183,692 | A→G | S153G (AGT→GGT) | zupT → | zinc transporter ZupT |
| RA | 3,188,101 | A→G | *410* (TAA→TAG) R6G (AGG→GGG) |
CXP41_RS16620 → CXP41_RS16625 → |
IS3‑like element IS2 family transposase fimbrial biogenesis outer membrane usher protein |
| RA | 3,188,274 | A→G | T63T (ACA→ACG) | CXP41_RS16625 → | fimbrial biogenesis outer membrane usher protein |
| RA | 3,192,382 | A→G | *355* (TAA→TAG) | yqiI → | fimbrial protein |
| RA | 3,200,115 | C→T | A71A (GCG→GCA) | glnE ← | bifunctional [glutamate‑‑ammonia ligase]‑adenylyl‑L‑tyrosine phosphorylase/[glutamate‑‑ammonia‑ligase] adenylyltransferase |
| RA | 3,201,892 | A→G | intergenic (‑241/‑1) | ygiF ← / → ygiM | inorganic triphosphatase/TIGR04211 family SH3 domain‑containing protein |
| RA | 3,206,010 | T→C | *311* (TAA→TAG) | ttdR ← | DNA‑binding transcriptional activator TtdR |
| RA | 3,219,051 | T→C | K238E (AAG→GAG) | aer ← | aerotaxis sensor receptor Aer |
| RA | 3,220,876 | A→G | T233A (ACT→GCT) | ygjG → | putrescine aminotransferase |
| RA | 3,232,860 | T→C | N170N (AAT→AAC) | fadH → | NADPH‑dependent 2,4‑dienoyl‑CoA reductase |
| RA | 3,239,247 | (T)6→7 | intergenic (+264/‑18) | ygjR → / → alx | Gfo/Idh/MocA family oxidoreductase/TerC family membrane protein Alx |
| RA | 3,249,624 | C→T | intergenic (+117/‑30) | mzrA → / → yqjC | EnvZ/OmpR regulon moderator MzrA/DUF1090 family protein YqjC |
| RA | 3,255,705 | A→G | *234* (TAA→TAG) | yhaK → | pirin family protein |
| RA | 3,258,360 | A→G | G112G (GGT→GGC) | cyuP ← | amino acid permease |
| RA | 3,266,812 | T→C | *313* (TAA→TAG) | tdcA ← | transcriptional regulator TdcA |
| RA | 3,269,697 | G→A | G200S (GGT→AGT) | yhaC → | YhaC family protein |
| RA | 3,270,287 | A→G | *396* (TAA→TAG) | yhaC → | YhaC family protein |
| RA | 3,272,617 | C→T | A276T (GCG→ACG) | garR ← | 2‑hydroxy‑3‑oxopropionate reductase |
| RA | 3,278,411 | T→C | F130F (TTT→TTC) | yhaV → | type II toxin‑antitoxin system ribonuclease toxin YhaV |
| RA | 3,278,552 | T→C | I267V (ATC→GTC) | agaR ← | aga operon transcriptional regulator AgaR |
| RA | 3,286,375 | T→C | V71V (GTT→GTC) | agaD → | PTS galactosamine transporter subunit IID |
| RA | 3,297,669 | A→G | *192* (TAA→TAG) | dolP → | division/outer membrane stress‑associated lipid‑binding lipoprotein |
| RA | 3,298,720 | C→T | G35E (GGA→GAA) | yraQ ← | permease |
| RA | 3,300,123 | G→A | T155T (ACG→ACA) | yhbO → | protein/nucleic acid deglycase |
| RA | 3,300,684 | A→G | T12A (ACC→GCC) | yhbQ → | DNA damage response exodeoxyribonuclease YhbQ |
| RA | 3,302,284 | A→G | S39G (AGC→GGC) | ubiU → | peptidase U32 family protein |
| RA | 3,305,140 | A→G | *336* (TAA→TAG) | yhbW → | luciferase‑like monooxygenase |
| RA | 3,308,725 | T→C | *295* (TAA→TAG) | nlpI ← | lipoprotein NlpI |
| RA | 3,309,553 | A→G | C19C (TGT→TGC) | nlpI ← | lipoprotein NlpI |
| RA | 3,309,690 | (C)5→6 | intergenic (‑81/+27) | nlpI ← / ← pnp | lipoprotein NlpI/polyribonucleotide nucleotidyltransferase |
| RA | 3,309,691 | A→G | intergenic (‑82/+26) | nlpI ← / ← pnp | lipoprotein NlpI/polyribonucleotide nucleotidyltransferase |
| RA | 3,321,017 | C→T | E427E (GAG→GAA) | yhbX ← | phosphoethanolamine transferase |
| RA | 3,328,787 | C→A | intergenic (+20/+136) | yhbY → / ← greA | ribosome assembly RNA‑binding protein YhbY/transcription elongation factor GreA |
| RA | 3,331,042 | (T)5→4 | pseudogene (1396/1435 nt) | dacB → | serine‑type D‑Ala‑D‑Ala carboxypeptidase |
| RA | 3,331,081 | A→G | pseudogene (1435/1435 nt) | dacB → | serine‑type D‑Ala‑D‑Ala carboxypeptidase |
| RA | 3,341,273 | C→T | S105L (TCA→TTA) | yrbG → | calcium/sodium antiporter |
| RA | 3,347,754 | A→G | *164* (TAA→TAG) | ptsN → | PTS IIA‑like nitrogen regulatory protein PtsN |
| RA | 3,353,806 | T→C | *310* (TAA→TAG) | yhcC ← | TIGR01212 family radical SAM protein |
| RA | 3,361,454 | A→G | intergenic (+153/‑407) | gltD → / → gltF | glutamate synthase subunit GltD/DUF1120 domain‑containing protein |
| RA | 3,366,349 | A→G | intergenic (+111/+38) | CXP41_RS17555 → / ← CXP41_RS17560 | YhcE family protein/IS5‑like element IS5 family transposase |
| RA | 3,367,638 | A→G | R10G (AGA→GGA) | yhcF → | DUF1120 domain‑containing protein |
| RA | 3,372,939 | A→G | G107G (GGT→GGC) | nanT ← | sialic acid transporter NanT |
| RA | 3,386,542 | T→C | *91* (TAA→TAG) | yhcO ← | barstar family protein |
| RA | 3,392,785 | C→T | intergenic (‑72/+358) | tldD ← / ← yhdP | metalloprotease TldD/AsmA2 domain‑containing protein YhdP |
| RA | 3,399,560 | T→C | M1M (ATG→GTG) † *368* (TAA→TAG) |
mreD ← mreC ← |
rod shape‑determining protein MreD rod shape‑determining protein MreC |
| RA | 3,401,458 | G→A | R105R (CGC→CGT) | mreB ← | rod shape‑determining protein MreB |
| RA | 3,411,091 | C→T | P43S (CCT→TCT) | dusB → | tRNA dihydrouridine synthase DusB |
| RA | 3,433,680 | (C)7→6 | pseudogene (567/1126 nt) | dprA ← | DNA‑protecting protein DprA |
| RA | 3,434,451 | A→G | T26A (ACA→GCA) | def → | peptide deformylase |
| RA | 3,435,263 | A→G | T122A (ACA→GCA) | fmt → | methionyl‑tRNA formyltransferase |
| RA | 3,439,827 | T→C | *123* (TAA→TAG) | yhdN ← | DUF1992 domain‑containing protein |
| RA | 3,441,636 | A→G | I27T (ATC→ACC) | rpoA ← | DNA‑directed RNA polymerase subunit alpha |
| RA | 3,458,302 | A→G | T414A (ACC→GCC) | gspD → | type II secretion system secretin GspD |
| RA | 3,466,999 | G→A | P138L (CCT→CTT) | bfr ← | bacterioferritin |
| RA | 3,479,278 | T→C | *67* (TAA→TAG) | yheV ← | YheV family putative zinc ribbon protein |
| RA | 3,479,488 | T→C | *602* (TAA→TAG) | kefB ← | glutathione‑regulated potassium‑efflux system protein KefB |
| RA | 3,483,653 | C→T | P560L (CCG→CTG) | yheS → | ABC transporter ATP‑binding protein |
| RA | 3,504,638 | A→G | *262* (TAA→TAG) | frlD → | fructoselysine 6‑kinase |
| RA | 3,508,628 | G→A | pseudogene (648/878 nt) | php ← | phosphotriesterase‑related protein |
| RA | 3,509,139 | +C | pseudogene (137/878 nt) | php ← | phosphotriesterase‑related protein |
| RA | 3,512,432 | (A)9→8 | pseudogene (599/907 nt) | CXP41_RS18440 ← | hypothetical protein |
| RA | 3,516,412 | C→T | C63Y (TGT→TAT) | dam ← | adenine‑specific DNA‑methyltransferase |
| RA | 3,516,790 | C→T | K401K (AAG→AAA) | damX ← | cell division protein DamX |
| RA | 3,532,291 | C→T | A279T (GCA→ACA) | yhgE ← | DUF4153 domain‑containing protein |
| RA | 3,535,342 | T→C | R405G (AGG→GGG) | envZ ← | two‑component system sensor histidine kinase EnvZ |
| RA | 3,544,760 | T→C | *257* (TAA→TAG) | bioH ← | pimeloyl‑ACP methyl ester esterase BioH |
| RA | 3,546,251 | A→G | *228* (TAA→TAG) | gntX → | DNA utilization protein GntX |
| RA | 3,548,672 | T→C | *695* (TAA→TAG) | malQ ← | 4‑alpha‑glucanotransferase |
| RA | 3,556,719 | G→A | H273Y (CAC→TAC) | rtcA ← | RNA 3'‑terminal phosphate cyclase |
| RA | 3,567,287 | T→C | *478* (TAA→TAG) | glgA ← | glycogen synthase GlgA |
| RA | 3,567,938 | T→C | L261L (TTA→TTG) | glgA ← | glycogen synthase GlgA |
| RA | 3,584,141 | A→G | *139* (TAA→TAG) | CXP41_RS18760 → | YrhA family protein |
| RA | 3,588,057 | T→C | I143T (ATT→ACT) *248* (TAA→TAG) |
yhhA → ugpQ ← |
DUF2756 family protein glycerophosphodiester phosphodiesterase |
| RA | 3,590,507 | C→T | G70S (GGC→AGC) | ugpE ← | sn‑glycerol‑3‑phosphate ABC transporter permease UgpE |
| RA | 3,599,244 | G→A | Q368* (CAA→TAA) | livJ ← | branched chain amino acid ABC transporter substrate‑binding protein LivJ |
| RA | 3,614,779 | C→T | I142I (ATC→ATT) | nikA → | nickel ABC transporter substrate‑binding protein |
| RA | 3,644,586 | A→G | G428G (GGT→GGC) | prlC ← | oligopeptidase A |
| RA | 3,652,831 | A→G | intergenic (+107/+38) | CXP41_RS19090 → / ← CXP41_RS19095 | hypothetical protein/IS5‑like element IS5 family transposase |
| RA | 3,659,580 | A→G | *176* (TAA→TAG) | gadE → | acid resistance transcriptional activator GadE |
| RA | 3,665,051 | (G)7→6 | pseudogene (256/730 nt) | gadW ← | acid resistance transcriptional activator GadW |
| RA | 3,665,674 | T→C | *275* (TAA→TAG) | gadX ← | acid resistance transcriptional activator GadX |
| RA | 3,684,318 | T→C | *663* (TAA→TAG) | hmsP ← | biofilm formation regulator HmsP |
| RA | 3,695,528 | A→G | Y133H (TAT→CAT) | bcsA ← | UDP‑forming cellulose synthase catalytic subunit |
| RA | 3,696,685 | T→C | *63* (TAA→TAG) | bcsR ← | cellulose biosynthesis protein BcsR |
| RA | 3,710,250 | (C)7→6 | pseudogene (915/1693 nt) | eptB ← | kdo(2)‑lipid A phosphoethanolamine 7''‑transferase |
| RA | 3,720,457 | A→G | *97* (TAA→TAG) | yiaG → | HTH‑type transcriptional regulator |
| RA | 3,728,808 | (C)10→8 | pseudogene (1254‑1255/1457 nt) | xylB ← | xylulokinase |
| RA | 3,732,671 | A→G | S284G (AGT→GGT) | xylF → | D‑xylose ABC transporter substrate‑binding protein |
| RA | 3,733,010 | A→G | E40G (GAG→GGG) | xylG → | D‑xylose ABC transporter ATP‑binding protein |
| RA | 3,736,848 | A→G | *393* (TAA→TAG) | xylR → | DNA‑binding transcriptional regulator XylR |
| RA | 3,736,852 | Δ1 bp | intergenic (+4/+193) | xylR → / ← bax | DNA‑binding transcriptional regulator XylR/protein bax |
| RA | 3,736,968 | T→C | intergenic (+120/+77) | xylR → / ← bax | DNA‑binding transcriptional regulator XylR/protein bax |
| RA | 3,743,921 | T→C | I172I (ATT→ATC) | galK → | galactokinase |
| RA | 3,752,014 | A→G | *287* (TAA→TAG) K3E (AAG→GAG) |
sgbU → araD → |
L‑ribulose‑5‑phosphate 3‑epimerase L‑ribulose‑5‑phosphate 4‑epimerase |
| RA | 3,763,772 | T→C | T36A (ACG→GCG) | yibF ← | glutathione S‑transferase |
| RA | 3,768,238 | A→G | *1378* (TAA→TAG) | rhsA → | RHS element protein RhsA |
| RA | 3,769,101 | A→G | *281* (TAA→TAG) | yibA → | HEAT repeat domain‑containing protein |
| RA | 3,775,524 | C→T | A441V (GCT→GTT) | mtlA → | PTS mannitol transporter subunit IICBA |
| RA | 3,782,939 | A→G | *397* (TAA→TAG) | lldD → | quinone‑dependent L‑lactate dehydrogenase |
| RA | 3,783,610 | A→G | *158* (TAA→TAG) | trmL → | tRNA (uridine(34)/cytosine(34)/5‑ carboxymethylaminomethyluridine(34)‑2'‑O)‑ methyltransferase TrmL |
| RA | 3,790,969 | T→C | V316A (GTT→GCT) *345* (TAA→TAG) |
yibQ → waaH ← |
divergent polysaccharide deacetylase family protein UDP‑glucuronate:LPS(HepIII) glycosyltransferase |
| RA | 3,791,274 | A→G | C244R (TGC→CGC) | waaH ← | UDP‑glucuronate:LPS(HepIII) glycosyltransferase |
| RA | 3,794,748 | T→C | *286* (TAA→TAG) | yibB ← | protein YibB |
| RA | 3,812,226 | A→G | *160* (TAA→TAG) | coaD → | pantetheine‑phosphate adenylyltransferase |
| RA | 3,817,731 | (A)9→8 | intergenic (‑41/+26) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH |
| RA | 3,817,786 | T→C | pseudogene (687/716 nt) | rph ← | ribonuclease PH |
| RA | 3,820,507 | A→G | *275* (TAA→TAG) | dinD → | DNA damage‑inducible protein D |
| RA | 3,821,411 | T→C | H205H (CAT→CAC) *561* (TAA→TAG) |
yicG → ligB ← |
trimeric intracellular cation channel family protein NAD‑dependent DNA ligase LigB |
| RA | 3,840,060 | A→G | *395* (TAA→TAG) | setC → | sugar efflux transporter |
| RA | 3,844,378 | T→C | *445* (TAA→TAG) | adeQ ← | adenine permease AdeQ |
| RA | 3,851,714 | +C | pseudogene (345/1502 nt) | uhpB ← | signal transduction histidine‑protein kinase/phosphatase UhpB |
| RA | 3,854,812 | T→C | *33* (TAA→TAG) | ivbL ← | ilvB operon leader peptide IvbL |
| RA | 3,857,882 | T→C | N4S (AAC→AGC) *116* (TAA→TAG) |
yidG ← yidH ← |
DUF202 domain‑containing protein YidH family protein |
| RA | 3,864,419 | T→C | pseudogene (1103/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| RA | 3,864,439 | +C | pseudogene (1083/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| JC | 3,864,444 | +GCC | pseudogene (1078/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| RA | 3,872,359 | A→G | *355* (TAA→TAG) G445G (GGT→GGC) |
cbrA → dgoT ← |
colicin M resistance lipid reductase CbrA MFS transporter |
| RA | 3,884,842 | T→C | D269G (GAT→GGT) | dnaA ← | chromosomal replication initiator protein DnaA |
| RA | 3,894,373 | A→G | T281A (ACG→GCG) | mdtL → | multidrug efflux MFS transporter MdtL |
| RA | 3,898,969 | (G)5→4 | pseudogene (278/667 nt) | yieH → | 6‑phosphogluconate phosphatase |
| RA | 3,899,358 | A→G | pseudogene (667/667 nt) | yieH → | 6‑phosphogluconate phosphatase |
| RA | 3,900,528 | A→G | *196* (TAA→TAG) | cbrC → | PF03691 family colicin E2 tolerance protein CbrC |
| RA | 3,910,433 | G→A | intergenic (‑148/+35) | pstB ← / ← pstA | phosphate ABC transporter ATP‑binding protein PstB/phosphate ABC transporter permease PstA |
| RA | 3,915,245 | A→G | C115R (TGT→CGT) | glmS ← | glutamine‑‑fructose‑6‑phosphate transaminase (isomerizing) |
| RA | 3,922,869 | T→C | *80* (TAA→TAG) | atpE ← | F0F1 ATP synthase subunit C |
| RA | 3,923,434 | T→C | T179T (ACA→ACG) | atpB ← | F0F1 ATP synthase subunit A |
| RA | 3,939,087 | A→G | *297* (TAA→TAG) | rbsB → | ribose ABC transporter substrate‑binding protein RbsB |
| RA | 3,941,138 | A→G | *331* (TAA→TAG) F465S (TTT→TCT) |
rbsR → mdtD ← |
ribose operon transcriptional repressor RbsR multidrug transporter subunit MdtD |
| RA | 3,952,339 | A→G | *33* (TAA→TAG) | ilvL → | ilv operon leader peptide |
| RA | 3,958,794 | A→G | *515* (TAA→TAG) | ilvA → | threonine ammonia‑lyase, biosynthetic |
| RA | 3,963,836 | C→G | A414G (GCC→GGC) | rep → | DNA helicase Rep |
| RA | 3,965,748 | T→C | H134R (CAC→CGC) | gppA ← | guanosine‑5'‑triphosphate,3'‑diphosphate diphosphatase |
| RA | 3,971,934 | C→T | pseudogene (985/1048 nt) | wzzE → | ECA polysaccharide chain length modulation protein |
| RA | 3,971,952 | (G)7→6 | pseudogene (1003/1048 nt) | wzzE → | ECA polysaccharide chain length modulation protein |
| RA | 3,971,997 | A→G | pseudogene (1048/1048 nt) | wzzE → | ECA polysaccharide chain length modulation protein |
| RA | 3,978,525 | C→T | L110F (CTT→TTT) | wzxE → | lipid III flippase WzxE |
| RA | 3,982,878 | (G)8→6 | pseudogene (72‑73/1388 nt) | yifK → | amino acid permease |
| RA | 3,986,115 | A→G | *412* (TAA→TAG) | aslB → | anaerobic sulfatase maturase |
| RA | 3,988,608 | T→C | *399* (TAA→TAG) | hemY ← | protoheme IX biogenesis protein HemY |
| RA | 3,993,976 | T→C | L301P (CTA→CCA) | cyaA → | class I adenylate cyclase |
| RA | 4,004,735 | T→C | *139* (TAA→TAG) | CXP41_RS20835 ← | protein YigG |
| RA | 4,009,615 | A→G | *610* (TAA→TAG) | recQ → | ATP‑dependent DNA helicase RecQ |
| RA | 4,020,682 | A→G | *476* (TAA→TAG) | rmuC → | DNA recombination protein RmuC |
| RA | 4,026,258 | A→G | *261* (TAA→TAG) L162L (CTT→CTC) |
tatD → rfaH ← |
3'‑5' ssDNA/RNA exonuclease TatD transcription/translation regulatory transformer protein RfaH |
| RA | 4,056,361 | G→A | T280T (ACC→ACT) | glnG ← | nitrogen regulation protein NR(I) |
| RA | 4,063,079 | A→G | *237* (TAA→TAG) | yihL → | GntR family transcriptional regulator |
| RA | 4,077,376 | A→G | *262* (TAA→TAG) | csqR → | DeoR/GlpR family DNA‑binding transcription regulator |
| RA | 4,079,391 | A→G | intergenic (+17/‑28) | dtd → / → fabY | D‑aminoacyl‑tRNA deacylase/fatty acid biosynthesis protein FabY |
| RA | 4,080,360 | A→G | *314* (TAA→TAG) | fabY → | fatty acid biosynthesis protein FabY |
| RA | 4,108,242 | A→G | *167* (TAA→TAG) | cpxP → | cell‑envelope stress modulator CpxP |
| RA | 4,119,045 | A→G | C34R (TGC→CGC) | glpK ← | glycerol kinase GlpK |
| RA | 4,139,151 | G→A | S143S (AGC→AGT) | yijF ← | DUF1287 domain‑containing protein |
| RA | 4,149,401 | A→G | *114* (TAA→TAG) I280T (ATT→ACT) |
frwD → yijO ← |
PTS fructose‑like transporter subunit IIB AraC family transcriptional regulator |
| RA | 4,150,603 | T→C | S529G (AGC→GGC) | eptC ← | phosphoethanolamine transferase CptA |
| RA | 4,160,508 | G→A | G33S (GGC→AGC) | oxyR → | DNA‑binding transcriptional regulator OxyR |
| RA | 4,202,215 | T→C | intergenic (+199/‑3) | yjaG → / → hupA | YjaG family protein/DNA‑binding protein HU‑alpha |
| RA | 4,204,740 | T→G | V298G (GTA→GGA) | zraS → | two‑component system sensor histidine kinase ZraS |
| RA | 4,206,567 | A→G | *442* (TAA→TAG) N429N (AAT→AAC) |
zraR → purD ← |
sigma‑54‑dependent response regulator transcription factor ZraR phosphoribosylamine‑‑glycine ligase |
| RA | 4,215,602 | T→C | *148* (TAA→TAG) | yjaB ← | acetyltransferase |
| RA | 4,220,737 | G→A | A74T (GCG→ACG) | aceK → | bifunctional isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,234,674 | A→G | V161A (GTG→GCG) | lysC ← | lysine‑sensitive aspartokinase 3 |
| RA | 4,270,410 | (T)8→7 | intergenic (+181/+322) | tyrB → / ← CXP41_RS22090 | aromatic amino acid transaminase/protein YjbS |
| RA | 4,270,732 | T→C | *68* (TAA→TAG) | CXP41_RS22090 ← | protein YjbS |
| RA | 4,281,772 | G→A | intergenic (+21/‑131) | ghxP → / → yjcE | guanine/hypoxanthine transporter GhxP/Na+/H+ antiporter |
| RA | 4,299,593 | T→C | N567D (AAC→GAC) | fdhF ← | formate dehydrogenase subunit alpha |
| RA | 4,304,165 | G→A | T280I (ACC→ATC) | mdtO ← | multidrug efflux transporter permease subunit MdtO |
| RA | 4,319,334 | T→C | S163G (AGC→GGC) | phnL ← | phosphonate C‑P lyase system protein PhnL |
| RA | 4,326,801 | G→A | P97L (CCG→CTG) | phnC ← | phosphonate ABC transporter ATP‑binding protein |
| RA | 4,327,077 | G→A | T5I (ACC→ATC) | phnC ← | phosphonate ABC transporter ATP‑binding protein |
| RA | 4,331,820 | (G)7→6 | pseudogene (473/817 nt) | rdcB → | YjcZ‑like family protein |
| RA | 4,333,560 | T→C | V378A (GTG→GCG) | proP → | glycine betaine/L‑proline transporter ProP |
| RA | 4,338,331 | G→A | S209S (AGC→AGT) | adiC ← | arginine/agmatine antiporter |
| RA | 4,348,012 | G→A | T414I (ACC→ATC) | fumB ← | class I fumarate hydratase |
| RA | 4,354,806 | A→G | *99* (TAA→TAG) | ghoS → | type V toxin‑antitoxin system endoribonuclease antitoxin GhoS |
| RA | 4,355,007 | A→G | *58* (TAA→TAG) | ghoT → | type V toxin‑antitoxin system toxin GhoT |
| RA | 4,379,115 | T→C | H105H (CAT→CAC) *178* (TAA→TAG) |
sugE → blc ← |
quaternary ammonium compound efflux SMR transporter SugE lipocalin Blc |
| RA | 4,388,798 | T→C | A833A (GCA→GCG) | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,391,860 | G→A | H143Y (CAC→TAC) | asd ← | archaetidylserine decarboxylase |
| RA | 4,396,984 | T→C | G331G (GGT→GGC) | nnr → | bifunctional ADP‑dependent NAD(P)H‑hydrate dehydratase/NAD(P)H‑hydrate epimerase |
| RA | 4,424,719 | T→C | V203A (GTC→GCC) | ulaD → | 3‑keto‑L‑gulonate‑6‑phosphate decarboxylase UlaD |
| RA | 4,426,312 | A→G | *229* (TAA→TAG) | ulaF → | L‑ribulose‑5‑phosphate 4‑epimerase UlaF |
| RA | 4,426,442 | T→C | pseudogene (275/275 nt) | yjfY ← | DUF1471 family protein YjfY |
| RA | 4,426,468 | +C | pseudogene (249/275 nt) | yjfY ← | DUF1471 family protein YjfY |
| RA | 4,427,759 | A→G | *105* (TAA→TAG) | priB → | primosomal replication protein N |
| RA | 4,430,004 | T→C | pseudogene (386/402 nt) *213* (TAA→TAG) |
CXP41_RS22940 → ytfB ← |
TetR/AcrR family transcriptional regulator cell division protein YtfB |
| RA | 4,435,089 | T→C | *287* (TAA→TAG) | qorB ← | NAD(P)H:quinone oxidoreductase |
| RA | 4,443,463 | T→C | *213* (TAA→TAG) | msrA ← | peptide‑methionine (S)‑S‑oxide reductase MsrA |
| RA | 4,443,932 | C→T | G57E (GGG→GAG) | msrA ← | peptide‑methionine (S)‑S‑oxide reductase MsrA |
| RA | 4,449,793 | +T | pseudogene (3757/3779 nt) | tamB → | autotransporter assembly complex protein TamB |
| RA | 4,449,815 | A→G | pseudogene (3779/3779 nt) | tamB → | autotransporter assembly complex protein TamB |
| RA | 4,476,063 | (A)7→6 | pseudogene (6/585 nt) | bdcR → | TetR/AcrR family transcriptional regulator |
| RA | 4,476,316 | A→G | pseudogene (259/585 nt) | bdcR → | TetR/AcrR family transcriptional regulator |
| RA | 4,477,488 | (G)7→6 | pseudogene (127/1816 nt) | CXP41_RS23185 → | hypothetical protein |
| JC | 4,492,041 | +ATACGTGTAAT | intergenic (‑52/+15) | yjgR ← / ← idnR | DUF853 domain‑containing protein/DNA‑binding transcriptional regulator IdnR |
| RA | 4,492,056 | T→C | *333* (TAA→TAG) | idnR ← | DNA‑binding transcriptional regulator IdnR |
| RA | 4,492,290 | T→C | A255A (GCA→GCG) | idnR ← | DNA‑binding transcriptional regulator IdnR |
| RA | 4,501,415 | A→G | *410* (TAA→TAG) | CXP41_RS23285 → | IS3‑like element IS2 family transposase |
| RA | 4,501,958 | T→C | pseudogene (731/1181 nt) | CXP41_RS23290 ← | phosphoethanolamine transferase |
| RA | 4,501,975 | T→C | pseudogene (714/1181 nt) | CXP41_RS23290 ← | phosphoethanolamine transferase |
| RA | 4,505,921 | A→G | intergenic (‑557/‑52) | insG ← / → nanX | IS4‑like element IS4 family transposase/MFS transporter |
| RA | 4,509,378 | A→G | intergenic (+9/+3) | CXP41_RS23345 → / ← CXP41_RS23350 | transposase/IS30‑like element IS30 family transposase |
| RA | 4,512,103 | G→A | intergenic (+55/+502) | CXP41_RS24315 → / ← fecE | hypothetical protein/Fe(3+) dicitrate ABC transporter ATP‑binding protein FecE |
| RA | 4,512,605 | T→C | pseudogene (768/768 nt) | fecE ← | Fe(3+) dicitrate ABC transporter ATP‑binding protein FecE |
| RA | 4,513,061 | T→C | pseudogene (312/768 nt) | fecE ← | Fe(3+) dicitrate ABC transporter ATP‑binding protein FecE |
| RA | 4,517,199 | T→C | D465G (GAC→GGC) | fecA ← | Fe(3+) dicitrate transport protein FecA |
| RA | 4,520,929 | A→G | pseudogene (488/698 nt) | CXP41_RS23410 → | IS1‑like element IS1F family transposase |
| RA | 4,529,477 | G→A | P140L (CCG→CTG) | sgcA ← | SgcA family PTS sugar transporter subunit IIA |
| RA | 4,537,356 | T→C | pseudogene (651/1241 nt) | yjhR → | helicase YjhR |
| RA | 4,540,700 | T→C | *239* (TAA→TAG) | nanC ← | N‑acetylneuraminic acid outer membrane channel NanC |
| RA | 4,542,898 | (A)6→7 | pseudogene (27/602 nt) | fimB → | type 1 fimbria switch DNA invertase FimB |
| RA | 4,543,473 | A→G | pseudogene (602/602 nt) | fimB → | type 1 fimbria switch DNA invertase FimB |
| RA | 4,567,378 | A→C | F129L (TTT→TTG) | yjiM ← | double‑cubane‑cluster‑containing anaerobic reductase |
| RA | 4,567,880 | T→C | *427* (TAA→TAG) | yjiN ← | DUF445 domain‑containing protein |
| RA | 4,571,223 | A→G | pseudogene (312/921 nt) | CXP41_RS24325 → | Rpn family recombination‑promoting nuclease/putative transposase |
| RA | 4,579,872 | T→C | M1M (ATG→GTG) † *460* (TAA→TAG) |
mcrC ← mcrB ← |
5‑methylcytosine‑specific restriction endonuclease system specificity protein McrC 5‑methylcytosine‑specific restriction endonuclease subunit McrB |
| RA | 4,583,535 | A→G | A476A (GCT→GCC) | hsdM ← | type I restriction‑modification system methyltransferase |
| RA | 4,606,116 | A→G | *242* (TAA→TAG) K15E (AAA→GAA) |
yjjQ → bglJ → |
response regulator transcription factor DNA‑binding transcriptional activator BglJ |
| RA | 4,608,009 | (G)9→8 | noncoding (72/88 nt) | CXP41_RS23865 ← | tRNA‑Leu |
| RA | 4,608,154 | G→A | noncoding (48/87 nt) | CXP41_RS23870 ← | tRNA‑Leu |
| RA | 4,611,252 | (C)8→7 | intergenic (+14/‑78) | yjjG → / → prfC | pyrimidine 5'‑nucleotidase/peptide chain release factor 3 |
| RA | 4,614,205 | A→G | *54* (TAA→TAG) | ytjA → | DUF1328 domain‑containing protein |
| RA | 4,616,176 | A→G | *260* (TAA→TAG) | yjjV → | metal‑dependent hydrolase |
| RA | 4,621,820 | G→A | G104E (GGA→GAA) | deoB → | phosphopentomutase |
| RA | 4,625,008 | T→C | *339* (TAA→TAG) | lplA ← | lipoate‑‑protein ligase LplA |
| RA | 4,640,027 | A→G | *475* (TAA→TAG) | creC → | two‑component system sensor histidine kinase CreC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP025268 | 261993–262008 | 296274–296260 | 34253–34282 | 203 [200] | [188] 217 | [CXP41_RS01280]–intF | [CXP41_RS01280],ykfI,yafW,ykfH,ykfG,yafX,ykfF,CXP41_RS01315,CXP41_RS01320,CXP41_RS01325,CXP41_RS01330,yafZ,ykfA,perR,CXP41_RS01355,CXP41_RS01360,CXP41_RS01365,ykfC,CXP41_RS01385,mmuP,mmuM,fbpC,CXP41_RS01405,CXP41_RS01410,CXP41_RS01410,CXP41_RS01420,CXP41_RS01425,yagB,CXP41_RS24560,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,CXP41_RS01470,CXP41_RS01480,CXP41_RS01480,CXP41_RS01490,yagK,yagL,CXP41_RS01505,ykgV,CXP41_RS01515,intF |
| * | * | ÷ | NZ_CP025268 | 695805 | 695988 | 184 | 204 [196] | [198] 202 | [CXP41_RS03680]–CXP41_RS03685 | [CXP41_RS03680],CXP41_RS03685 |
| * | * | ÷ | NZ_CP025268 | 805180 | 817515 | 12336 | 202 [195] | [197] 210 | [ybhC]–[bioF] | [ybhC],CXP41_RS04245,CXP41_RS04250,CXP41_RS04255,CXP41_RS04260,CXP41_RS04265,CXP41_RS04270,CXP41_RS04280,CXP41_RS04285,CXP41_RS04290,bet,CXP41_RS04300,kil,CXP41_RS24110,CXP41_RS04315,CXP41_RS04320,CXP41_RS04325,CXP41_RS24585,CXP41_RS04335,CXP41_RS04340,CXP41_RS04345,tetR(B),CXP41_RS04355,CXP41_RS24590,[bioF] |
| * | * | ÷ | NZ_CP025268 | 1057254–1057381 | 1057497–1057425 | 45–244 | 201 [192] | [189] 207 | [CXP41_RS24600] | [CXP41_RS24600] |
| * | * | ÷ | NZ_CP025268 | 2861104 | 2861955 | 852 | 208 [187] | [195] 219 | ble‑Sh | ble‑Sh |
| * | * | ÷ | NZ_CP025268 | 3424449–3424919 | 3425229–3424923 | 5–781 | 201 [196] | [200] 205 | [rrf]–[CXP41_RS17880] | [rrf],[CXP41_RS17880] |
| * | * | ÷ | NZ_CP025268 | 3743225 | 3743406 | 182 | 203 [200] | [0] 471 | [galK] | [galK] |
| * | * | ÷ | NZ_CP025268 | 3744554 | 3744685 | 132 | 546 [0] | [179] 216 | [galK]–[yiaK] | [galK],[yiaK] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | 66565 = | 231 (0.370) | 178 (0.430) +43 bp |
57/180 | 1.7 | 54.6% | intergenic (‑14/+101) | araD/araA | L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase |
| ? | NZ_CP025268 | = 66606 | 207 (0.340) | intergenic (‑55/+60) | araD/araA | L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase | |||||
| * | ? | NZ_CP025268 | = 66614 | 222 (0.360) | 88 (0.540) +98 bp |
24/70 | 1.1 | 55.1% | intergenic (‑63/+52) | araD/araA | L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase |
| ? | NZ_CP025268 | 66628 = | 323 (0.520) | intergenic (‑77/+38) | araD/araA | L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase | |||||
| * | ? | NZ_CP025268 | 787879 = | 2 (0.000) | 467 (0.760) | 118/264 | 0.5 | 99.8% | coding (17/1050 nt) | galM | galactose‑1‑epimerase |
| ? | NZ_CP025268 | 3743407 = | 0 (0.000) | coding (2/1149 nt) | galK | galactokinase | |||||
| * | ? | NZ_CP025268 | = 787880 | 3 (0.000) | 542 (0.880) | 124/264 | 0.4 | 99.7% | coding (16/1050 nt) | galM | galactose‑1‑epimerase |
| ? | NZ_CP025268 | = 3744553 | 0 (0.000) | coding (1148/1149 nt) | galK | galactokinase | |||||
| * | ? | NZ_CP025268 | 1214891 = | 734 (1.190) | 229 (0.420) | 79/234 | 1.5 | 28.4% | coding (290/630 nt) | CXP41_RS06370 | protein StfP |
| ? | NZ_CP025268 | 1216719 = | 508 (0.940) | coding (40/540 nt) | CXP41_RS06385 | phage tail protein | |||||
| * | ? | NZ_CP025268 | 1292725 = | 484 (0.780) | 191 (0.370) | 67/224 | 2.0 | 44.5% | intergenic (+182/+2) | narI/CXP41_RS06830 | respiratory nitrate reductase subunit gamma/RtT sRNA |
| ? | NZ_CP025268 | = 1293258 | 68 (0.130) | intergenic (‑44/+3) | CXP41_RS06840/CXP41_RS06845 | RtT sRNA/tRNA‑Tyr | |||||
| * | ? | NZ_CP025268 | = 1293101 | 1 (0.000) | 181 (0.350) | 64/226 | 2.3 | 52.5% | noncoding (114/132 nt) | CXP41_RS06840 | RtT sRNA |
| ? | NZ_CP025268 | 1293574 = | 327 (0.620) | noncoding (66/85 nt) | CXP41_RS06855 | tRNA‑Tyr | |||||
| * | ? | NZ_CP025268 | = 1402056 | NA (NA) | 1197 (1.940) | 154/266 | 0.1 | 99.8% | intergenic (+146/‑127) | CXP41_RS07410/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP025268 | 1913625 = | 3 (0.000) | intergenic (‑46/‑113) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein | |||||
| * | ? | NZ_CP025268 | = 1913628 | 21 (0.030) | 790 (1.280) | 156/266 | 0.1 | 97.4% | intergenic (‑49/‑110) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
| ? | NZ_CP025268 | = 2106982 | NA (NA) | intergenic (‑68/+3) | CXP41_RS11235/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
| * | ? | NZ_CP025268 | 4621386 = | 38 (0.060) | 814 (1.330) +A |
140/264 | 0.2 | 95.6% | coding (1242/1314 nt) | deoA | thymidine phosphorylase |
| ? | NZ_CP025268 | = 4621393 | NA (NA) | coding (1249/1314 nt) | deoA | thymidine phosphorylase | |||||