breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 7,926 Δ1 bp pseudogene (35/1432 nt) yaaJ ← sodium:alanine symporter family protein
RA 10,648 G→A A237V (GCC→GTC)  msyB ← acidic protein MsyB
RA 14,302 T→C V45A (GTG→GCG)  dnaJ → molecular chaperone DnaJ
RA 28,270 T→C intergenic (+62/‑105) rihC → / → dapB ribonucleoside hydrolase RihC/4‑hydroxy‑tetrahydrodipicolinate reductase
RA 30,617 C→T P322P (CCC→CCT carA → glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit
RA 35,374 C→G intergenic (‑2/+4) caiE ← / ← caiD carnitine operon protein CaiE/crotonobetainyl‑CoA hydratase
RA 37,904 T→C N405D (AAC→GAC)  caiB ← L‑carnitine CoA‑transferase
RA 47,777 A→G *177* (TAA→TAG
N3S (AAC→AGC) 
kefF →
kefC →
glutathione‑regulated potassium‑efflux system oxidoreductase KefF
glutathione‑regulated potassium‑efflux system protein KefC
RA 49,766 T→C intergenic (+134/‑58) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
RA 49,832 C→T S3S (AGC→AGT folA → type 3 dihydrofolate reductase
RA 66,448 C→T G35E (GGG→GAG)  araD ← L‑ribulose‑5‑phosphate 4‑epimerase
RA 71,946 A→G *255* (TAA→TAG yabI → DedA family protein
RA 72,060 T→C *233* (TAA→TAG thiQ ← thiamine ABC transporter ATP‑binding protein ThiQ
RA 75,278 G→A R12C (CGC→TGC)  thiB ← thiamine ABC transporter substrate binding subunit
RA 95,839 A→G *453* (TAA→TAG
I3V (ATT→GTT) 
murF →
mraY →
UDP‑N‑acetylmuramoyl‑tripeptide‑‑D‑alanyl‑D‑ alanine ligase
phospho‑N‑acetylmuramoyl‑pentapeptide‑ transferase
RA 104,183 G→A G124E (GGG→GAG)  ftsA → cell division protein FtsA
RA 111,264 A→G *130* (TAA→TAG mutT → 8‑oxo‑dGTP diphosphatase MutT
RA 112,069 G→A A121V (GCG→GTG)  zapD ← cell division protein ZapD
RA 115,492 C→T V22M (GTG→ATG)  hofC ← protein transport protein HofC
RA 117,629 G→A P283L (CCA→CTA)  nadC ← carboxylating nicotinate‑nucleotide diphosphorylase
RA 122,687 A→G *255* (TAA→TAG pdhR → pyruvate dehydrogenase complex transcriptional repressor PdhR
RA 125,058 C→T R737R (CGC→CGT aceE → pyruvate dehydrogenase (acetyl‑transferring), homodimeric type
RA 138,217 T→C F435S (TTT→TCT)  cueO → multicopper oxidase CueO
RA 150,778 C→T A3T (GCT→ACT)  yadC ← fimbrial tip‑adhesin YadC
RA 151,867 T→C I66V (ATA→GTA)  yadL ← fimbrial‑like protein YadL
RA 155,766 C→T K89K (AAG→AAA yadV ← fimbrial chaperone
RA 159,854 G→A F20F (TTC→TTT gluQRS ← tRNA glutamyl‑Q(34) synthetase GluQRS
RA 160,613 T→C *235* (TAA→TAG sfsA ← DNA/RNA nuclease SfsA
RA 162,758 A→G T275A (ACT→GCT)  hrpB → ATP‑dependent helicase HrpB
RA 167,574 T→C I87T (ATC→ACC)  fhuA → ferrichrome porin FhuA
RA 169,476 G→A C721Y (TGC→TAC)  fhuA → ferrichrome porin FhuA
RA 177,493 T→C *267* (TAA→TAG btuF ← vitamin B12 ABC transporter substrate‑binding protein BtuF
RA 183,046 T→C G251G (GGT→GGC cdaR → DNA‑binding transcriptional regulator CdaR
RA 183,437 +A coding (1144/1212 nt) cdaR → DNA‑binding transcriptional regulator CdaR
RA 183,450 A→G K386R (AAG→AGG)  cdaR → DNA‑binding transcriptional regulator CdaR
RA 184,087 T→C *271* (TAA→TAG yaeI ← phosphodiesterase YaeI
RA 197,404 C→T S343S (AGC→AGT rseP → sigma E protease regulator RseP
RA 200,044 T→C S763P (TCA→CCA)  bamA → outer membrane protein assembly factor BamA
RA 219,194 C→T P77P (CCG→CCA tsaA ← tRNA (N6‑threonylcarbamoyladenosine(37)‑N6)‑methyltransferase TrmO
RA 220,069 T→C L230L (CTA→CTG metQ ← methionine ABC transporter substrate‑binding lipoprotein MetQ
RA 239,208 A→G pseudogene (279/279 nt) CXP41_RS01150 → ISAs1 family transposase
RA 247,291 A→G *250* (TAA→TAG yafL → C40 family peptidase
RA 247,295 +G intergenic (+4/‑171) yafL → / → rayT C40 family peptidase/REP‑associated tyrosine transposase RayT
RA 252,913 G→A A126T (GCA→ACA)  yafP → GNAT family N‑acetyltransferase
RA 255,488 G→A R20C (CGT→TGT)  pepD ← cytosol nonspecific dipeptidase
RA 261,616 A→G H354R (CAT→CGT)  proA → glutamate‑5‑semialdehyde dehydrogenase
RA 306,029 C→T V786M (GTG→ATG)  ecpC ← fimbrial usher EcpC
RA 308,410 T→C *223* (TAA→TAG ecpB ← fimbrial chaperone EcpB
RA 311,241 T→C G26G (GGT→GGC CXP41_RS01610 → protein YkgL
RA 314,296 A→G intergenic (+12/‑47) CXP41_RS01640 → / → CXP41_RS01645 inverse autotransporter beta domain‑containing protein/IS3‑like element IS3 family transposase
RA 315,505 A→G *388* (TAA→TAG CXP41_RS01645 → IS3‑like element IS3 family transposase
RA 320,615 (G)6→7 intergenic (+482/‑44) rclR → / → ykgE reactive chlorine‑specific transcriptional regulator RclR/heterodisulfide reductase‑related iron‑sulfur binding cluster
RA 322,406 T→C S340P (TCA→CCA)  ykgF → LutB/LldF family L‑lactate oxidation iron‑sulfur protein
RA 335,021 T→C intergenic (+85/‑39) yahD → / → yahE ankyrin repeat domain‑containing protein/DUF2877 domain‑containing protein
RA 339,140 A→G *99* (TAA→TAG CXP41_RS01780 → protein YahH
RA 343,725 C→T H167Y (CAC→TAC)  CXP41_RS01800 → protein YahL
RA 344,042 A→G *272* (TAA→TAG CXP41_RS01800 → protein YahL
RA 344,700 A→G *82* (TAA→TAG CXP41_RS01805 → protein YahM
RA 345,338 C→T L17L (TTG→TTA yahN ← LysE family transporter
RA 348,898 C→T intergenic (+275/‑165) prpB → / → prpC methylisocitrate lyase/2‑methylcitrate synthase
RA 353,643 A→G *629* (TAA→TAG prpE → propionate‑‑CoA ligase
RA 356,642 T→C intergenic (+137/+200) codA → / ← cynR cytosine/isoguanine deaminase/transcriptional regulator CynR
RA 356,657 T→C intergenic (+152/+185) codA → / ← cynR cytosine/isoguanine deaminase/transcriptional regulator CynR
RA 356,677 2 bp→CC intergenic (+172/+164) codA → / ← cynR cytosine/isoguanine deaminase/transcriptional regulator CynR
RA 356,842 T→C *300* (TAA→TAG cynR ← transcriptional regulator CynR
RA 370,593 T→C pseudogene (304/867 nt) mhpC → 2‑hydroxy‑6‑oxonona‑2,4‑dienedioate hydrolase
RA 372,017 G→A A16T (GCC→ACC)  mhpF → acetaldehyde dehydrogenase
RA 374,118 G→A intergenic (+186/‑392) dmpG → / → mhpT 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter
RA 374,126 A→G intergenic (+194/‑384) dmpG → / → mhpT 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter
RA 374,298 G→A intergenic (+366/‑212) dmpG → / → mhpT 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter
RA 374,358 T→C intergenic (+426/‑152) dmpG → / → mhpT 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter
RA 378,657 T→C *92* (TAA→TAG frmR ← formaldehyde‑responsive transcriptional repressor FrmR
RA 381,630 A→G *410* (TAA→TAG CXP41_RS01975 → IS3‑like element IS2 family transposase
RA 382,310 T→C Q226R (CAG→CGG)  yaiP ← glycosyltransferase family 2 protein
RA 383,110 T→C pseudogene (558/672 nt) CXP41_RS01990 ← PIG‑L family deacetylase
RA 384,788 G→A G169D (GGT→GAT)  tauA → taurine ABC transporter substrate‑binding protein
RA 390,790 T→C pseudogene (1489/1527 nt)
*388* (TAA→TAG
CXP41_RS02030 →
CXP41_RS02035 ←
outer membrane autotransporter barrel domain‑containing protein
IS3‑like element IS3 family transposase
RA 390,887 G→A A356V (GCG→GTG)  CXP41_RS02035 ← IS3‑like element IS3 family transposase
RA 400,598 +G pseudogene (162/260 nt) iraP → anti‑adapter protein IraP
RA 410,347 T→C *395* (TAA→TAG araJ ← MFS transporter AraJ
RA 436,157 A→G *173* (TAA→TAG pgpA → phosphatidylglycerophosphatase A
RA 442,101 T→C *197* (TAA→TAG yajL ← protein deglycase YajL
RA 442,654 T→C N13S (AAT→AGT) 
*304* (TAA→TAG
yajL ←
panE ←
protein deglycase YajL
2‑dehydropantoate 2‑reductase
RA 443,691 T→C intergenic (‑126/‑42) panE ← / → yajQ 2‑dehydropantoate 2‑reductase/nucleotide binding protein YajQ
RA 449,814 T→C T283A (ACT→GCT)  cyoA ← cytochrome o ubiquinol oxidase subunit II
RA 460,292 A→G *785* (TAA→TAG lon → endopeptidase La
RA 467,560 G→A G43E (GGG→GAG)  decR → DNA‑binding transcriptional regulator DecR
RA 468,479 G→A E187K (GAG→AAG)  mdlA → SmdA family multidrug ABC transporter permease/ATP‑binding protein
RA 469,693 A→G *591* (TAA→TAG
N3S (AAT→AGT) 
mdlA →
mdlB →
SmdA family multidrug ABC transporter permease/ATP‑binding protein
SmdB family multidrug efflux ABC transporter permease/ATP‑binding protein
RA 474,717 C→T P97S (CCA→TCA)  ybaY → YbaY family lipoprotein
RA 476,075 A→G *118* (TAA→TAG ybaA → DUF1428 domain‑containing protein
RA 476,485 C→T A395T (GCT→ACT)  pdeB ← cyclic‑guanylate‑specific phosphodiesterase PdeB
RA 477,583 T→C T29A (ACC→GCC)  pdeB ← cyclic‑guanylate‑specific phosphodiesterase PdeB
RA 479,384 T→C *125* (TAA→TAG tomB ← Hha toxicity modulator TomB
RA 485,691 C→T P36S (CCA→TCA)  mscK → mechanosensitive channel MscK
RA 489,335 T→C *176* (TAA→TAG priC ← primosomal replication protein N''
RA 490,826 C→T A122V (GCT→GTT)  apt → adenine phosphoribosyltransferase
RA 498,064 T→C R320R (CGT→CGC
*320* (TAA→TAG
hemH →
aes ←
ferrochelatase
acetyl esterase
RA 514,858 T→C intergenic (‑35/‑111) qmcA ← / → fetA SPFH/Band 7/PHB domain protein/iron ABC transporter ATP‑binding protein FetA
RA 517,771 A→C I143M (ATT→ATG ybbO ← NADP(+)‑dependent aldehyde reductase
RA 521,513 C→T A683V (GCG→GTG)  ybbP → ABC transporter permease
RA 523,208 T→C L300L (TTG→CTG)  rhsD → rhs element protein RhsD
RA 539,565 T→C intergenic (+7/‑50) allB → / → ybbY allantoinase AllB/uracil/xanthine transporter
RA 541,580 G→A A215T (GCG→ACG)  glxK → glycerate 3‑kinase
RA 543,804 T→C H180R (CAT→CGT)  allC ← allantoate deiminase
RA 550,382 A→G *298* (TAA→TAG ybcF → carbamate kinase
RA 567,054 A→G *388* (TAA→TAG CXP41_RS02940 → IS3‑like element IS3 family transposase
RA 570,494 A→G *184* (TAA→TAG ybcL → Raf kinase inhibitor‑like protein YbcL
RA 571,504 T→C C29C (TGT→TGC CXP41_RS02970 → hypothetical protein
RA 577,618 A→G intergenic (+59/+32) rzoD → / ← bor prophage lysis lipoprotein RzoD/serum resistance lipoprotein Bor
RA 579,290 G→A intergenic (+154/+11) CXP41_RS03055 → / ← ylcI protein YbcW/YlcI/YnfO family protein
RA 581,197 +G intergenic (+50/+4) CXP41_RS24355 → / ← CXP41_RS03085 tail fiber assembly protein/class I SAM‑dependent methyltransferase
RA 581,201 T→C pseudogene (667/667 nt) CXP41_RS03085 ← class I SAM‑dependent methyltransferase
RA 585,329 C→T S210N (AGC→AAC)  envY ← DNA‑binding transcriptional regulator EnvY
RA 607,037 A→G *51* (TAA→TAG hokE → type I toxin‑antitoxin system toxin HokE
RA 630,861 C→T S640F (TCC→TTC)  cstA → pyruvate/proton symporter CstA
RA 633,795 2 bp→GC [ybdL][ybdM] [ybdL], [ybdM]
RA 648,421 G→A S67F (TCC→TTC)  citF ← citrate lyase subunit alpha
RA 648,697 G→A G281G (GGC→GGT citE ← citrate (pro‑3S)‑lyase subunit beta
RA 661,202 A→C D42E (GAT→GAG lipB ← lipoyl(octanoyl) transferase LipB
RA 663,151 T→C *363* (TAA→TAG rlpA ← endolytic peptidoglycan transglycosylase RlpA
RA 671,996 A→C F613V (TTT→GTT)  leuS ← leucine‑‑tRNA ligase
RA 674,619 T→C pseudogene (977/977 nt) ybeQ ← SEL1‑like repeat protein
RA 674,649 +T pseudogene (947/977 nt) ybeQ ← SEL1‑like repeat protein
RA 676,937 A→G T159A (ACC→GCC)  djlB → J domain‑containing protein
RA 678,922 A→G R123G (AGG→GGG)  ybeU → DUF1266 domain‑containing protein
RA 695,324 A→G *392* (TAA→TAG ubiF → 3‑demethoxyubiquinol 3‑hydroxylase
RA 710,772 T→C T59A (ACG→GCG)  ybfE ← LexA regulated protein
RA 715,436 T→C pseudogene (210/651 nt) CXP41_RS03795 ← DUF2625 domain‑containing protein
RA 722,577 (T)9→8 pseudogene (887/2686 nt) kdpD ← two‑component system sensor histidine kinase KdpD
RA 737,902 A→G intergenic (+3/‑148) ybfD → / → ybgA ISAs1 family transposase/YbgA family protein
RA 745,772 T→C H263H (CAT→CAC
*349* (TAA→TAG
nei →
abrB ←
endonuclease VIII
AbrB family transcriptional regulator
RA 745,775 A→G *264* (TAA→TAG
A348A (GCT→GCC
nei →
abrB ←
endonuclease VIII
AbrB family transcriptional regulator
RA 761,788 A→G *406* (TAA→TAG odhB → 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase
RA 774,169 A→G A123A (GCA→GCG ybgC → tol‑pal system‑associated acyl‑CoA thioesterase
RA 801,562 C→A L54I (CTT→ATT)  ybhJ → hydratase
RA 820,054 A→G *226* (TAA→TAG bioD → dethiobiotin synthase
RA 826,854 A→G *151* (TAA→TAG moaE → molybdopterin synthase catalytic subunit MoaE
RA 828,613 A→G *238* (TAA→TAG ybhM → Bax inhibitor‑1/YccA family protein
RA 832,209 A→G V336A (GTG→GCG)  ybhR ← ABC transporter permease
RA 833,226 T→C *378* (TAA→TAG ybhS ← ABC transporter permease
RA 837,079 T→C M1M (ATG→GTG) †
*224* (TAA→TAG
hlyD ←
cecR ←
secretion protein HlyD
DNA‑binding transcriptional regulator CecR
RA 857,496 C→T P20S (CCC→TCC)  CXP41_RS24120 → hypothetical protein
RA 859,976 T→C *43* (TAA→TAG mntS ← manganase accumulation protein MntS
RA 861,872 A→G *373* (TAA→TAG ybiR → anion transporter
RA 862,903 G→A intergenic (‑52/‑167) ldtB ← / → ybiT L,D‑transpeptidase/ABC‑F family ATPase
RA 867,745 G→A H657Y (CAT→TAT)  ybiW ← glycyl radical protein
RA 879,908 A→G *304* (TAA→TAG gsiD → glutathione ABC transporter permease GsiD
RA 882,434 A→G *783* (TAA→TAG pdeI → EAL domain‑containing protein
RA 886,964 A→G *372* (TAA→TAG
S208S (AGT→AGC
yliI →
gstB ←
aldose sugar dehydrogenase YliI
glutathione S‑transferase GstB
RA 895,066 A→G *179* (TAA→TAG rcdA → DNA‑binding transcriptional regulator RcdA
RA 899,976 A→G *301* (TAA→TAG rimK → 30S ribosomal protein S6‑‑L‑glutamate ligase
RA 912,850 A→G *277* (TAA→TAG
R337R (CGT→CGC
amiD →
ybjS ←
N‑acetylmuramoyl‑L‑alanine amidase AmiD
NAD(P)‑dependent oxidoreductase
RA 918,239 G→A intergenic (‑83/+50) poxB ← / ← hcr ubiquinone‑dependent pyruvate dehydrogenase/NADH oxidoreductase
RA 920,456 A→G L156L (TTG→CTG)  hcp ← hydroxylamine reductase
RA 922,837 C→T K106K (AAG→AAA aqpZ ← aquaporin Z
RA 929,473 T→C *75* (TAA→TAG cspD ← cold shock‑like protein CspD
RA 934,312 G→A R76R (CGC→CGT aat ← leucyl/phenylalanyl‑tRNA‑‑protein transferase
RA 939,446 (A)7→8 intergenic (‑289/‑255) trxB ← / → lrp thioredoxin‑disulfide reductase/leucine‑responsive transcriptional regulator Lrp
RA 945,089 A→G *204* (TAA→TAG lolA → outer membrane lipoprotein chaperone LolA
RA 973,690 A→G *755* (TAA→TAG ycaI → ComEC family protein
RA 974,224 G→A Q166Q (CAG→CAA msbA → lipid A ABC transporter ATP‑binding protein/permease MsbA
RA 976,458 A→G *329* (TAA→TAG lpxK → tetraacyldisaccharide 4'‑kinase
RA 990,729 A→G *183* (TAA→TAG mepK → YcbK family protein
RA 993,777 G→A R104R (CGC→CGT ompF ← porin OmpF
RA 1,013,520 +G pseudogene (463/542 nt) zapC → cell division protein ZapC
RA 1,013,596 T→C pseudogene (539/542 nt)
*370* (TAA→TAG
zapC →
ycbX ←
cell division protein ZapC
6‑N‑hydroxylaminopurine resistance protein YcbX
RA 1,075,358 A→G *58* (TAA→TAG ymdF → general stress protein
RA 1,075,379 +G intergenic (+21/+234) ymdF → / ← rutG general stress protein/pyrimidine utilization transport protein G
RA 1,075,387 +T intergenic (+29/+226) ymdF → / ← rutG general stress protein/pyrimidine utilization transport protein G
RA 1,079,162 A→G L34L (TTG→CTG)  rutC ← 3‑aminoacrylate deaminase
RA 1,080,834 T→C T75A (ACG→GCG)  rutA ← pyrimidine utilization protein A
RA 1,089,162 G→A pseudogene (705/830 nt) CXP41_RS05660 → FTR1 family protein
RA 1,089,998 A→T R218R (CGA→CGT efeO → iron uptake system protein EfeO
RA 1,096,672 C→T E96E (GAG→GAA pgaB ← poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase PgaB
RA 1,101,377 T→C *388* (TAA→TAG CXP41_RS05705 ← IS3‑like element IS3 family transposase
RA 1,109,323 C→T E107E (GAG→GAA csgE ← curli production assembly/transport protein CsgE
RA 1,126,409 T→C *38* (TAA→TAG CXP41_RS05875 ← YceO family protein
RA 1,128,613 A→G intergenic (‑24/+50) dinI ← / ← pyrC DNA damage‑inducible protein I/dihydroorotase
RA 1,132,113 G→A R106C (CGC→TGC)  mdtH ← multidrug efflux MFS transporter MdtH
RA 1,146,507 +T pseudogene (1028/1643 nt) flgK → flagellar hook‑associated protein FlgK
RA 1,153,112 T→C *195* (TAA→TAG yceF ← 7‑methyl‑GTP pyrophosphatase
RA 1,155,792 A→G *357* (TAA→TAG plsX → phosphate acyltransferase PlsX
RA 1,156,813 A→G *318* (TAA→TAG fabH → beta‑ketoacyl‑ACP synthase III
RA 1,160,148 G→A G370D (GGT→GAT)  fabF → beta‑ketoacyl‑ACP synthase II
RA 1,161,210 A→G *270* (TAA→TAG pabC → aminodeoxychorismate lyase
RA 1,175,450 +G pseudogene (483/632 nt) comR ← TetR family copper‑responsive transcriptional repressor ComR
RA 1,184,770 T→C G117G (GGT→GGC lolE → lipoprotein‑releasing ABC transporter permease subunit LolE
RA 1,206,865 (T)6→5 pseudogene (1043/1129 nt) intE ← site‑specific integrase
RA 1,207,982 A→G V51A (GTC→GCC)  xisE ← excisionase
RA 1,210,325 A→G *67* (TAA→TAG ymfT → YdaS family helix‑turn‑helix protein
RA 1,211,261 A→G K54E (AAG→GAG)  CXP41_RS06340 → DUF4222 domain‑containing protein
RA 1,212,832 A→G *61* (TAA→TAG
pseudogene (1/408 nt)
CXP41_RS06350 →
CXP41_RS06355 →
protein YmfR
phage portal protein
RA 1,215,618 T→C pseudogene (386/405 nt) tfaP → tail fiber assembly protein
RA 1,215,634 +C pseudogene (402/405 nt) tfaP → tail fiber assembly protein
RA 1,218,752 T→C intergenic (+75/+28) CXP41_RS06400 → / ← iraM isocitrate/isopropylmalate family dehydrogenase/anti‑adapter protein IraM
RA 1,219,333 G→A intergenic (‑230/+27) iraM ← / ← CXP41_RS24360 anti‑adapter protein IraM/protein YmgK
RA 1,219,803 T→C *135* (TAA→TAG ycgX ← DUF1398 domain‑containing protein
RA 1,224,095 +GA coding (248/249 nt) CXP41_RS06440 → protein YmgC
RA 1,235,822 G→A A216T (GCT→ACT)  ycgM → fumarylacetoacetate hydrolase family protein
RA 1,236,662 T→C A277A (GCA→GCG hlyE ← hemolysin HlyE
RA 1,252,698 A→G *147* (TAA→TAG CXP41_RS06625 → protein YcgY
RA 1,257,728 (C)6→5 pseudogene (210/1072 nt) dhaK ← dihydroxyacetone kinase subunit DhaK
RA 1,259,137 A→G T325A (ACT→GCT)  dhaR → dihydroxyacetone kinase operon transcriptional regulator DhaR
RA 1,267,627 G→A I83I (ATC→ATT dauA ← C4‑dicarboxylic acid transporter DauA
RA 1,272,069 A→G *419* (TAA→TAG hemA → glutamyl‑tRNA reductase
RA 1,277,472 A→G I132T (ATC→ACC)  chaA ← sodium‑potassium/proton antiporter ChaA
RA 1,281,832 C→T E5E (GAG→GAA narL ← two‑component system response regulator NarL
RA 1,292,813 C→T noncoding (46/132 nt) CXP41_RS06830 ← RtT sRNA
RA 1,292,822 2 bp→GG noncoding (36‑37/132 nt) CXP41_RS06830 ← RtT sRNA
RA 1,292,876 C→T intergenic (‑18/+29) CXP41_RS06830 ← / ← CXP41_RS06835 RtT sRNA/RtT sRNA
RA 1,293,001 A→G noncoding (36/132 nt) CXP41_RS06835 ← RtT sRNA
RA 1,293,160 G→A noncoding (55/132 nt) CXP41_RS06840 ← RtT sRNA
RA 1,293,179 A→G noncoding (36/132 nt) CXP41_RS06840 ← RtT sRNA
RA 1,313,834 T→C *418* (TAA→TAG kch ← voltage‑gated potassium channel protein
RA 1,356,015 (G)8→7 intergenic (‑158/+211) fabI ← / ← ycjD enoyl‑ACP reductase FabI/DUF559 domain‑containing protein
RA 1,359,324 T→C N5S (AAC→AGC) 
*322* (TAA→TAG
sapC ←
sapB ←
peptide ABC transporter permease SapC
putrescine ABC transporter permease SapB
RA 1,371,754 T→C *326* (TAA→TAG pspF ← phage shock protein operon transcriptional activator
RA 1,374,862 (T)8→9 intergenic (+40/‑172) pspE → / → ycjM thiosulfate sulfurtransferase PspE/glucosylglycerate phosphorylase
RA 1,385,625 A→G *220* (TAA→TAG pgmB → beta‑phosphoglucomutase
RA 1,386,607 A→G pseudogene (969/1082 nt) CXP41_RS07340 → ABC transporter ATP‑binding protein
RA 1,391,913 A→G T126A (ACA→GCA)  tyrR → transcriptional regulator TyrR
RA 1,394,060 T→C pseudogene (313/966 nt) ycjG → L‑Ala‑D/L‑Glu epimerase
RA 1,394,317 T→C pseudogene (570/966 nt) ycjG → L‑Ala‑D/L‑Glu epimerase
RA 1,394,713 A→G pseudogene (966/966 nt)
L235P (CTT→CCT) 
ycjG →
mpaA ←
L‑Ala‑D/L‑Glu epimerase
murein tripeptide amidase MpaA
RA 1,397,708 A→G *300* (TAA→TAG pgrR → DNA‑binding transcriptional regulator PgrR
RA 1,404,804 (C)8→7 pseudogene (252/517 nt) ogt ← methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase
RA 1,416,819 T→C *412* (TAA→TAG intR ← site‑specific integrase
RA 1,423,205 A→G intergenic (‑157/‑285) kilR ← / → sieB killing protein KilR/superinfection exclusion B family protein
RA 1,423,978 A→G *163* (TAA→TAG
S51S (AGT→AGC
sieB →
ydaF ←
superinfection exclusion B family protein
YdaF family protein
RA 1,424,163 A→G intergenic (‑33/+421) ydaF ← / ← racR YdaF family protein/DNA‑binding transcriptional repressor RacR
RA 1,430,799 A→G *120* (TAA→TAG CXP41_RS07610 → protein YdaY
RA 1,431,107 A→G *67* (TAA→TAG CXP41_RS07615 → hypothetical protein
RA 1,432,694 T→C R284R (CGA→CGG CXP41_RS07635 ← IS5‑like element ISKpn26 family transposase
RA 1,432,712 T→C P278P (CCA→CCG CXP41_RS07635 ← IS5‑like element ISKpn26 family transposase
RA 1,432,730 C→A R272R (CGG→CGT CXP41_RS07635 ← IS5‑like element ISKpn26 family transposase
RA 1,432,781 T→C P255P (CCA→CCG CXP41_RS07635 ← IS5‑like element ISKpn26 family transposase
RA 1,432,786 G→T H254N (CAT→AAT)  CXP41_RS07635 ← IS5‑like element ISKpn26 family transposase
RA 1,432,790 T→C K252K (AAA→AAG CXP41_RS07635 ← IS5‑like element ISKpn26 family transposase
RA 1,432,800 C→T R249K (AGA→AAA)  CXP41_RS07635 ← IS5‑like element ISKpn26 family transposase
RA 1,432,871 C→T G225G (GGG→GGA CXP41_RS07635 ← IS5‑like element ISKpn26 family transposase
RA 1,432,916 C→A L210L (CTG→CTT CXP41_RS07635 ← IS5‑like element ISKpn26 family transposase
RA 1,436,701 C→T A945V (GCG→GTG)  stfR → prophage tail fiber N‑terminal domain‑containing protein
RA 1,437,092 A→G A1075A (GCA→GCG stfR → prophage tail fiber N‑terminal domain‑containing protein
RA 1,455,211 T→C T320A (ACA→GCA)  tynA ← primary‑amine oxidase
RA 1,459,111 A→C G122G (GGA→GGC paaA → 1,2‑phenylacetyl‑CoA epoxidase subunit A
RA 1,463,436 G→A A118A (GCG→GCA paaG → 2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase PaaG
RA 1,463,871 A→G *263* (TAA→TAG paaG → 2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase PaaG
RA 1,469,308 A→G *317* (TAA→TAG
N7D (AAC→GAC) 
paaX →
paaY →
phenylacetic acid degradation operon negative regulatory protein PaaX
phenylacetic acid degradation protein PaaY
RA 1,471,815 C→T pseudogene (1605/2526 nt) CXP41_RS07805 → autotransporter domain‑containing protein
RA 1,472,740 T→C *410* (TAA→TAG CXP41_RS07810 ← IS3‑like element IS2 family transposase
RA 1,496,208 G→A R163K (AGG→AAG)  cybB → cytochrome b561
RA 1,498,038 G→A E250E (GAG→GAA trg → methyl‑accepting chemotaxis protein Trg
RA 1,502,127 G→A E151E (GAG→GAA opgD → glucan biosynthesis protein OpgD
RA 1,507,944 A→G *223* (TAA→TAG ydcL → DUF3313 domain‑containing protein
RA 1,518,287 C→T P218S (CCC→TCC)  ydcT → ABC transporter ATP‑binding protein
RA 1,534,757 A→G pseudogene (2037/2037 nt) CXP41_RS08125 → RHS repeat protein
RA 1,537,864 T→C intergenic (+93/‑7) CXP41_RS08140 → / → pptA ISAs1‑like element ISEc5 family transposase/tautomerase PptA
RA 1,549,203 T→C pseudogene (1331/1331 nt) CXP41_RS08190 ← leucine‑rich repeat domain‑containing protein
RA 1,553,179 T→C D320D (GAT→GAC fdnG → formate dehydrogenase‑N subunit alpha
RA 1,554,506 G→A D763N (GAT→AAT)  fdnG → formate dehydrogenase‑N subunit alpha
RA 1,561,931 T→C *309* (TAA→TAG ddpF ← ABC transporter ATP‑binding protein
RA 1,564,499 A→G G77G (GGT→GGC ddpC ← D,D‑dipeptide ABC transporter permease
RA 1,570,577 T→C *461* (TAA→TAG dosC ← diguanylate cyclase DosC
RA 1,572,104 C→T intergenic (‑66/+219) CXP41_RS24370 ← / ← digH protein YddY/glycoside hydrolase family 10 protein
RA 1,576,151 T→G I238I (ATA→ATC gadB ← glutamate decarboxylase
RA 1,576,721 A→G D48D (GAT→GAC gadB ← glutamate decarboxylase
RA 1,576,736 A→G F43F (TTT→TTC gadB ← glutamate decarboxylase
RA 1,591,100 T→C D69G (GAC→GGC)  ydeP ← acid resistance putative oxidoreductase YdeP
RA 1,598,952 (C)9→8 pseudogene (3955/5423 nt) CXP41_RS08400 ← ECSE_1600 family autotransporter
RA 1,603,437 T→C *531* (TAA→TAG lsrK ← autoinducer‑2 kinase
RA 1,619,609 T→C intergenic (‑86/‑15) sad ← / → yneJ succinate‑semialdehyde dehydrogenase/LysR family transcriptional regulator
RA 1,620,861 T→C A93A (GCT→GCC yneK → putative protein YneK
RA 1,623,038 A→G *397* (TAA→TAG ydeA → L‑arabinose MFS transporter
RA 1,624,777 A→G *128* (TAA→TAG marA → MDR efflux pump AcrAB transcriptional activator MarA
RA 1,625,027 A→G *73* (TAA→TAG marB → multiple antibiotic resistance protein MarB
RA 1,626,362 A→G N71D (AAC→GAC)  ydeE → efflux MFS transporter YdeE
RA 1,629,176 (T)7→8 pseudogene (141/392 nt) ydeI ← YdeI family stress tolerance OB fold protein
RA 1,631,644 T→C I186V (ATT→GTT)  dcp ← peptidyl‑dipeptidase Dcp
RA 1,632,444 C→T L37L (CTG→TTG)  ydfG → bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/3‑hydroxypropionate dehydrogenase YdfG
RA 1,635,805 G→A intergenic (‑73/+16) ydfI ← / ← ydfJ mannitol dehydrogenase family protein/MHS family MFS transporter
RA 1,643,849 T→C *166* (TAA→TAG rzpQ ← DUF2514 domain‑containing protein
RA 1,653,860 A→G *73* (TAA→TAG CXP41_RS08750 → protein YdfC
RA 1,656,356 A→G pseudogene (696/696 nt) CXP41_RS08775 → IS3‑like element IS2 family transposase
RA 1,659,876 C→T A29T (GCG→ACG)  rspA ← starvation‑sensing protein RspA
RA 1,660,166 T→C K109R (AAG→AGG)  ynfA ← YnfA family protein
RA 1,660,178 +C coding (314/351 nt) ynfA ← YnfA family protein
RA 1,661,562 A→G *187* (TAA→TAG speG → spermidine N1‑acetyltransferase
RA 1,668,914 C→T T163I (ACA→ATA)  ynfH → dimethyl sulfoxide reductase anchor subunit
RA 1,669,938 A→G *205* (TAA→TAG dmsD → Tat proofreading chaperone DmsD
RA 1,675,399 A→G R295G (AGA→GGA)  ynfM → MFS transporter
RA 1,678,164 (T)8→7 pseudogene (157/367 nt) mdtJ ← multidrug/spermidine efflux SMR transporter subunit MdtJ
RA 1,690,360 (C)5→6 pseudogene (1047/1403 nt) fumC ← class II fumarate hydratase
RA 1,696,010 A→G Q447Q (CAA→CAG ydgA → YdgA family protein
RA 1,701,269 +A intergenic (‑380/+10) uidA ← / ← uidR beta‑glucuronidase/DNA‑binding transcriptional regulator UidR
RA 1,705,019 (T)6→5 pseudogene (848/1594 nt) malX → PTS maltose transporter subunit IICB
RA 1,713,981 C→T P8S (CCC→TCC)  rsxD → electron transport complex subunit RsxD
RA 1,717,337 (C)7→6 intergenic (+361/‑251) nth → / → dtpA endonuclease III/dipeptide/tripeptide permease DtpA
RA 1,723,877 A→G L182P (CTG→CCG)  anmK ← anhydro‑N‑acetylmuramic acid kinase
RA 1,731,441 A→G *200* (TAA→TAG nemR → DNA‑binding transcriptional regulator NemR
RA 1,738,522 A→G *1539* (TAA→TAG lhr → ATP‑dependent helicase
RA 1,740,303 C→T A36V (GCC→GTC)  sodB → superoxide dismutase [Fe]
RA 1,747,394 A→G intergenic (+14/+26) cfa → / ← ribE cyclopropane fatty acyl phospholipid synthase/riboflavin synthase
RA 1,749,559 T→C G428G (GGT→GGC mdtK → multidrug efflux MATE transporter MdtK
RA 1,761,825 A→G T437A (ACT→GCT)  pykF → pyruvate kinase PykF
RA 1,762,540 T→C pseudogene (1000/1000 nt) ldtE ← L,D‑transpeptidase LdtE
JC 1,762,571 +CTGGT pseudogene (969/1000 nt) ldtE ← L,D‑transpeptidase LdtE
RA 1,764,495 (C)6→5 pseudogene (844/1222 nt) sufS ← cysteine desulfurase SufS
RA 1,766,333 A→G C92R (TGT→CGT)  sufD ← Fe‑S cluster assembly protein SufD
RA 1,768,801 +G pseudogene (23/1487 nt) sufB ← Fe‑S cluster assembly protein SufB
RA 1,768,832 T→C *123* (TAA→TAG sufA ← Fe‑S cluster assembly scaffold SufA
JC 1,774,293 (G)10→7 coding (406‑408/1116 nt) ydiK → AI‑2E family transporter YdiK
RA 1,786,781 G→C G190G (GGG→GGC ydiS → FAD‑dependent oxidoreductase
RA 1,793,095 A→G *278* (TAA→TAG ppsR → posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR
RA 1,794,621 A→G *64* (TAA→TAG hemP → hemin uptake protein HemP
RA 1,797,084 T→C *155* (TAA→TAG nlpC ← NlpC/P60 family protein
RA 1,798,989 T→C *327* (TAA→TAG btuC ← vitamin B12 ABC transporter permease BtuC
RA 1,804,700 C→T K39K (AAG→AAA rpmI ← 50S ribosomal protein L35
RA 1,808,384 A→G pseudogene (474/1900 nt) espL1 → type III secretion system effector EspL1
RA 1,824,386 G→A G79G (GGC→GGT chbA ← PTS N,N'‑diacetylchitobiose transporter subunit IIA
RA 1,826,683 (A)7→8 intergenic (‑247/+51) chbB ← / ← osmE PTS N,N'‑diacetylchitobiose transporter subunit IIB/osmotically‑inducible lipoprotein OsmE
RA 1,831,362 C→T E126E (GAG→GAA astE ← succinylglutamate desuccinylase
RA 1,838,927 A→G *237* (TAA→TAG ydjX → TVP38/TMEM64 family protein
RA 1,846,713 A→G *136* (TAA→TAG
I80T (ATT→ACT) 
nudG →
ynjH ←
CTP pyrophosphohydrolase
YnjH family protein
RA 1,855,625 +C intergenic (+116/‑50) sppA → / → ansA signal peptide peptidase SppA/asparaginase
RA 1,867,449 G→A intergenic (‑205/‑137) msrB ← / → gapA peptide‑methionine (R)‑S‑oxide reductase MsrB/glyceraldehyde‑3‑phosphate dehydrogenase
RA 1,867,819 C→T R78R (CGC→CGT gapA → glyceraldehyde‑3‑phosphate dehydrogenase
RA 1,873,836 (T)5→6 pseudogene (67/1283 nt) yeaH → YeaH/YhbH family protein
RA 1,878,892 T→C *35* (TAA→TAG CXP41_RS09925 ← small membrane protein YoaI
RA 1,879,612 A→G *149* (TAA→TAG
pseudogene (778/821 nt)
yeaL →
nimR ←
DUF441 domain‑containing protein
DNA‑binding transcriptional regulator NimR
RA 1,879,869 (C)5→6 pseudogene (521/821 nt) nimR ← DNA‑binding transcriptional regulator NimR
RA 1,886,276 A→G V116A (GTG→GCG)  dmlR ← DNA‑binding transcriptional regulator DmlR
RA 1,891,623 A→G *322* (TAA→TAG yeaX → carnitine monooxygenase subunit YeaX
RA 1,897,215 G→A S278S (AGC→AGT yoaA ← ATP‑dependent DNA helicase
RA 1,910,574 G→A G25D (GGT→GAT)  mntP → manganese efflux pump MntP
RA 1,910,618 A→G S40G (AGC→GGC)  mntP → manganese efflux pump MntP
RA 1,915,287 C→T P67S (CCC→TCC)  yebQ → MFS transporter
RA 1,925,019 (T)8→7 intergenic (+63/‑18) yebT → / → rsmF lipid‑binding membrane homeostasis protein YebT/16S rRNA (cytosine(1407)‑C(5))‑methyltransferase RsmF
RA 1,930,910 A→G *219* (TAA→TAG yobB → carbon‑nitrogen hydrolase family protein YobB
RA 1,931,596 A→G *221* (TAA→TAG
D686D (GAT→GAC
exoX →
ptrB ←
exodeoxyribonuclease X
oligopeptidase B
RA 1,936,791 (G)6→5 pseudogene (1097/1180 nt) purT → formate‑dependent phosphoribosylglycinamide formyltransferase
RA 1,944,488 C→T S174N (AGC→AAC)  lpxM ← lauroyl‑Kdo(2)‑lipid IV(A) myristoyltransferase
RA 1,947,808 A→G E111G (GAG→GGG)  znuC → zinc ABC transporter ATP‑binding protein ZnuC
RA 1,952,382 A→G S195S (AGT→AGC yebC ← YebC/PmpR family DNA‑binding transcriptional regulator
RA 1,955,375 (C)6→5 intergenic (‑38/‑273) aspS ← / → yecD aspartate‑‑tRNA ligase/hydrolase
RA 1,957,477 A→G *132* (TAA→TAG yecN → MAPEG family protein
RA 1,969,513 A→G L118L (CTT→CTC flhA ← flagellar biosynthesis protein FlhA
RA 1,984,228 T→C *475* (TAA→TAG otsA ← alpha,alpha‑trehalose‑phosphate synthase
RA 2,002,534 T→C *329* (TAA→TAG dcyD ← D‑cysteine desulfhydrase
RA 2,016,041 T→C pseudogene (351/1129 nt) CXP41_RS10705 ← DUF5503 domain‑containing protein
RA 2,016,740 T→C *105* (TAA→TAG fliE ← flagellar hook‑basal body complex protein FliE
RA 2,020,135 A→G L76L (CTA→CTG fliH → flagellar assembly protein FliH
RA 2,025,541 A→G *138* (TAA→TAG fliN → flagellar motor switch protein FliN
RA 2,026,646 A→G *246* (TAA→TAG fliP → flagellar type III secretion system pore protein FliP
RA 2,026,925 A→G *90* (TAA→TAG fliQ → flagellar biosynthesis protein FliQ
RA 2,033,768 (C)5→6 pseudogene (190/920 nt) yedA → drug/metabolite exporter YedA
RA 2,038,575 A→G pseudogene (486/1193 nt) ompC → porin OmpC
RA 2,053,375 T→C S1467P (TCG→CCG)  yeeJ → inverse autotransporter adhesin YeeJ
RA 2,064,003 T→C *317* (TAA→TAG cbl ← HTH‑type transcriptional regulator Cbl
RA 2,072,991 T→C *410* (TAA→TAG CXP41_RS11040 ← IS3‑like element IS2 family transposase
RA 2,077,264 C→T R563W (CGG→TGG)  agn43 → autotransporter adhesin Ag43
RA 2,088,812 A→G G251G (GGT→GGC tsuA ← thiosulfate utilization transporter TsuA/YeeE
RA 2,089,870 G→A P411L (CCG→CTG)  plaP ← putrescine/proton symporter PlaP
RA 2,094,085 A→G *17* (TAA→TAG hisL → his operon leader peptide
RA 2,098,123 A→T D206V (GAT→GTT)  hisB → bifunctional histidinol‑phosphatase/imidazoleglycerol‑phosphate dehydratase HisB
RA 2,103,276 A→G V126A (GTG→GCG)  ugd ← UDP‑glucose 6‑dehydrogenase
RA 2,105,896 A→G intergenic (‑108/+38) wbbL ← / ← CXP41_RS11235 N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL/IS5‑like element IS5 family transposase
RA 2,108,533 T→C I6V (ATC→GTC) 
*197* (TAA→TAG
wbbK ←
wbbJ ←
glycosyltransferase family 1 protein
DapH/DapD/GlmU‑related protein
RA 2,118,541 T→C *465* (TAA→TAG wcaM ← colanic acid biosynthesis protein WcaM
RA 2,119,946 T→C *407* (TAA→TAG wcaL ← colanic acid biosynthesis glycosyltransferase WcaL
RA 2,122,203 A→G C81R (TGT→CGT)  wcaK ← colanic acid biosynthesis pyruvyl transferase WcaK
RA 2,134,892 T→C N9S (AAC→AGC) 
*406* (TAA→TAG
wcaD ←
wcaC ←
colanic acid polymerase WcaD
colanic acid biosynthesis glycosyltransferase WcaC
RA 2,135,706 C→T G135D (GGC→GAC)  wcaC ← colanic acid biosynthesis glycosyltransferase WcaC
RA 2,143,798 T→C *618* (TAA→TAG asmA ← outer membrane assembly protein AsmA
RA 2,154,002 T→G G341G (GGA→GGC yegI ← protein kinase YegI
RA 2,167,134 A→G N74D (AAT→GAT)  baeS → two‑component system sensor histidine kinase BaeS
RA 2,169,037 A→G *241* (TAA→TAG baeR → two‑component system response regulator BaeR
RA 2,173,732 T→C pseudogene (477/477 nt) CXP41_RS11545 ← DeoR/GlpR family DNA‑binding transcription regulator
RA 2,175,437 A→G *388* (TAA→TAG CXP41_RS11550 → IS3‑like element IS3 family transposase
RA 2,183,367 C→T S170S (AGC→AGT yegT → nucleoside permease
RA 2,186,072 T→C L314L (TTA→CTA) 
*249* (TAA→TAG
yegV →
yegW ←
carbohydrate kinase family protein
GntR family transcriptional regulator
RA 2,186,098 A→G *322* (TAA→TAG
L241L (TTA→CTA) 
yegV →
yegW ←
carbohydrate kinase family protein
GntR family transcriptional regulator
RA 2,193,631 T→C A439A (GCA→GCG yehB ← fimbrial biogenesis outer membrane usher protein
RA 2,204,490 (A)7→8 pseudogene (175/3632 nt) CXP41_RS11705 → DUF4132 domain‑containing protein
RA 2,214,980 A→G pseudogene (1845/2001 nt) yehQ → C69 family dipeptidase
RA 2,218,374 (C)5→6 pseudogene (306/1685 nt) btsS ← two‑component regulatory system sensor histidine kinase BtsS
RA 2,222,242 T→C A117A (GCA→GCG yehY ← glycine betaine ABC transporter permease YehY
RA 2,224,824 A→G C401R (TGT→CGT)  bglX ← beta‑glucosidase BglX
RA 2,229,079 T→C *196* (TAA→TAG yohC ← Yip1 family protein
RA 2,230,544 T→C *254* (TAA→TAG yohF ← SDR family oxidoreductase
RA 2,237,632 A→G *240* (TAA→TAG sanA → outer membrane permeability protein SanA
RA 2,244,790 (C)6→5 pseudogene (915/1042 nt) galS ← HTH‑type transcriptional regulator GalS
RA 2,267,514 C→T V6V (GTG→GTA fruB ← fused PTS fructose transporter subunit IIA/HPr protein
RA 2,270,049 C→T R188R (CGC→CGT yeiP → elongation factor P‑like protein YeiP
RA 2,278,202 G→A K601K (AAG→AAA yejA → extracellular solute‑binding protein
RA 2,278,214 A→G *605* (TAA→TAG yejA → extracellular solute‑binding protein
RA 2,280,334 A→G *342* (TAA→TAG yejE → ABC transporter permease
RA 2,292,596 (C)6→7 pseudogene (361/2531 nt) yejO ← autotransporter YejO
RA 2,293,062 A→G intergenic (‑106/+38) yejO ← / ← CXP41_RS12140 autotransporter YejO/IS5‑like element IS5 family transposase
RA 2,296,008 C→T G146G (GGG→GGA ccmH ← cytochrome c‑type biogenesis thiol:disulfide oxidoreductase CcmH
RA 2,320,195 A→G *891* (TAA→TAG rcsD → phosphotransferase RcsD
RA 2,321,062 T→C *950* (TAA→TAG rcsC ← two‑component system sensor histidine kinase RcsC
RA 2,322,054 A→G C620R (TGT→CGT)  rcsC ← two‑component system sensor histidine kinase RcsC
RA 2,338,371 T→C *208* (TAA→TAG yfaT ← DUF1175 domain‑containing protein
RA 2,354,197 G→A L284L (CTG→TTG)  glpQ ← glycerophosphodiester phosphodiesterase
RA 2,362,198 A→G V228A (GTG→GCG)  yfaU ← 2‑keto‑3‑deoxy‑L‑rhamnonate aldolase
RA 2,374,054 C→T R661* (CGA→TGA) 
T2M (ACG→ATG) 
arnA →
arnD →
bifunctional UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronic acid oxidase ArnA
4‑deoxy‑4‑formamido‑L‑arabinose‑ phosphoundecaprenol deformylase
RA 2,383,383 T→C *432* (TAA→TAG menF ← isochorismate synthase MenF
RA 2,385,598 C→T intergenic (‑20/‑45) elaA ← / → rbn GNAT family N‑acetyltransferase/ribonuclease BN
RA 2,415,086 G→C T101S (ACC→AGC)  yfbS ← SLC13 family permease
RA 2,418,734 C→T intergenic (+27/‑48) ackA → / → pta acetate kinase/phosphate acetyltransferase
RA 2,420,798 2 bp→CT coding (2017‑2018/2145 nt) pta → phosphate acetyltransferase
RA 2,442,583 C→T A200V (GCG→GTG)  flk → flagella biosynthesis regulator Flk
RA 2,453,263 T→C *274* (TAA→TAG yfcO ← fimbrial adhesin YfcO
RA 2,457,300 T→C pseudogene (1737/2646 nt) yfcU ← fimbrial usher protein YfcU
RA 2,466,923 (C)8→9 intergenic (+242/‑123) fadL → / → CXP41_RS12955 long‑chain fatty acid transporter FadL/protein YfdF
RA 2,472,140 C→T A84A (GCC→GCT yfdG → bactoprenol glucosyl transferase
RA 2,475,139 A→G pseudogene (291/291 nt)
L138P (CTT→CCT) 
CXP41_RS13005 →
yfdK ←
tail fiber assembly protein
tail fiber assembly protein
RA 2,482,126 G→A V82V (GTG→GTA dsdX → D‑serine transporter DsdX
RA 2,488,932 (C)7→6 pseudogene (525/3595 nt) evgS → acid‑sensing system histidine kinase EvgS
RA 2,498,985 C→T H85Y (CAT→TAT)  ypdI → colanic acid biosynthesis lipoprotein YpdI
RA 2,499,008 A→G *92* (TAA→TAG ypdI → colanic acid biosynthesis lipoprotein YpdI
RA 2,499,085 T→C *81* (TAA→TAG yfdY ← YfdY family protein
RA 2,514,921 A→G *419* (TAA→TAG yfeO → ion channel protein
RA 2,515,503 T→C *413* (TAA→TAG mntH ← Nramp family divalent metal transporter
RA 2,525,628 T→C *295* (TAA→TAG xapR ← DNA‑binding transcriptional regulator XapR
RA 2,525,887 C→T G209D (GGT→GAT)  xapR ← DNA‑binding transcriptional regulator XapR
JC 2,529,951 +GTATGAATT intergenic (+25/+5) CXP41_RS13300 → / ← yfeR outer membrane protein OmpK/LysR family transcriptional regulator
RA 2,529,956 T→C *309* (TAA→TAG yfeR ← LysR family transcriptional regulator
RA 2,538,057 C→T intergenic (+10/‑35) ptsH → / → ptsI phosphocarrier protein Hpr/phosphoenolpyruvate‑protein phosphotransferase PtsI
RA 2,556,120 A→G I15I (ATT→ATC ypeA ← GNAT family acetyltransferase
RA 2,578,161 A→G D57D (GAT→GAC eutT ← ethanolamine utilization cob(I)yrinic acid a,c‑diamide adenosyltransferase EutT
RA 2,593,561 T→C I647I (ATT→ATC acrD → multidrug efflux RND transporter permease AcrD
RA 2,595,629 A→G *119* (TAA→TAG yffB → ArsC family reductase
RA 2,599,253 C→T Q211Q (CAG→CAA tmcA ← tRNA cytosine(34) acetyltransferase TmcA
RA 2,604,636 (C)6→5 pseudogene (133/472 nt) bcp → thioredoxin‑dependent thiol peroxidase
JC 2,618,640 +TCC coding (680/846 nt) focB → formate transporter FocB
RA 2,622,099 T→C *234* (TAA→TAG hda ← DnaA inactivator Hda
RA 2,625,331 G→A E37E (GAG→GAA purM → phosphoribosylformylglycinamidine cyclo‑ligase
RA 2,633,505 A→G *64* (TAA→TAG yfgG → YfgG family protein
RA 2,641,319 T→C H21R (CAT→CGT)  der ← ribosome biogenesis GTPase Der
RA 2,649,037 T→C *771* (TAA→TAG pbpC ← peptidoglycan glycosyltransferase PbpC
RA 2,654,514 T→C M600V (ATG→GTG)  yfhM ← alpha2‑macroglobulin
RA 2,659,791 C→T A198T (GCT→ACT)  pepB ← aminopeptidase PepB
RA 2,677,792 A→G *141* (TAA→TAG yphA → DoxX family protein
RA 2,688,995 A→G G179G (GGT→GGC glyA ← serine hydroxymethyltransferase
RA 2,689,585 C→T intergenic (‑54/‑274) glyA ← / → hmpA serine hydroxymethyltransferase/NO‑inducible flavohemoprotein
RA 2,689,934 A→G T26A (ACC→GCC)  hmpA → NO‑inducible flavohemoprotein
RA 2,701,939 T→C *212* (TAA→TAG yfhb ← phosphatidylglycerophosphatase C
RA 2,710,506 T→C S215G (AGC→GGC)  lepA ← translation elongation factor 4
RA 2,717,592 C→T R225W (CGG→TGG)  srmB → ATP‑dependent RNA helicase SrmB
RA 2,727,089 A→G A113A (GCA→GCG pssA → CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA 2,728,472 T→C H107H (CAT→CAC
*433* (TAA→TAG
yfiM →
kgtP ←
YfiM family lipoprotein
alpha‑ketoglutarate permease
RA 2,741,519 A→G *114* (TAA→TAG raiA → ribosome‑associated translation inhibitor RaiA
RA 2,746,986 A→G N194D (AAT→GAT)  dgcN → diguanylate cyclase DgcN
RA 2,769,852 +C intergenic (‑52/‑89) yfjM ← / → rnlA DUF1524 domain‑containing protein/type II toxin‑antitoxin system toxin mRNA endoribonuclease RnlA
RA 2,771,469 (C)8→7 intergenic (+91/‑265) rnlB → / → yfjP type II toxin‑antitoxin system antitoxin RnlB/GTPase family protein
RA 2,773,510 A→G *274* (TAA→TAG yfjQ → DUF932 domain‑containing protein
RA 2,773,671 (C)5→6 intergenic (+161/‑55) yfjQ → / → yfjR DUF932 domain‑containing protein/WYL domain‑containing protein
RA 2,774,427 A→G *234* (TAA→TAG yfjR → WYL domain‑containing protein
RA 2,785,155 C→T pseudogene (1594/4580 nt) ypjA ← adhesin‑like autotransporter YpjA/EhaD
RA 2,786,415 +C pseudogene (334/4580 nt) ypjA ← adhesin‑like autotransporter YpjA/EhaD
RA 2,788,551 T→C pseudogene (483/1374 nt) CXP41_RS24250 ← DUF5507 domain‑containing protein
RA 2,790,751 A→G pseudogene (333/2252 nt) CXP41_RS24390 → alpha‑amylase family glycosyl hydrolase
RA 2,790,767 +C pseudogene (349/2252 nt) CXP41_RS24390 → alpha‑amylase family glycosyl hydrolase
RA 2,791,455 A→G pseudogene (1037/2252 nt) CXP41_RS24390 → alpha‑amylase family glycosyl hydrolase
RA 2,792,259 A→G pseudogene (1841/2252 nt) CXP41_RS24390 → alpha‑amylase family glycosyl hydrolase
RA 2,798,036 A→G *427* (TAA→TAG gabT → 4‑aminobutyrate‑‑2‑oxoglutarate transaminase
RA 2,800,167 T→C V158A (GTG→GCG)  csiR → DNA‑binding transcriptional regulator CsiR
RA 2,800,358 T→C *150* (TAA→TAG kbp ← potassium binding protein Kbp
RA 2,800,937 C→T C38Y (TGT→TAT)  yqaE ← YqaE/Pmp3 family membrane protein
RA 2,804,496 A→G *110* (TAA→TAG ygaM → DUF883 domain‑containing protein
RA 2,818,239 T→C *172* (TAA→TAG luxS ← S‑ribosylhomocysteine lyase
RA 2,828,512 T→C N362S (AAC→AGC)  mltB ← lytic murein transglycosylase B
RA 2,828,516 +G coding (1081/1152 nt) mltB ← lytic murein transglycosylase B
RA 2,831,371 A→G *320* (TAA→TAG srlE → PTS glucitol/sorbitol transporter subunit IIB
RA 2,839,065 A→G *378* (TAA→TAG norW → NADH:flavorubredoxin reductase NorW
RA 2,843,404 A→T intergenic (‑120/‑140) ascG ← / → ascF DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC
RA 2,846,434 A→G *475* (TAA→TAG ascB → 6‑phospho‑beta‑glucosidase AscB
RA 2,846,593 T→C *157* (TAA→TAG hycI ← hydrogenase maturation peptidase HycI
RA 2,855,893 A→G *291* (TAA→TAG
S4G (AGC→GGC) 
hypB →
hypC →
hydrogenase nickel incorporation protein HypB
hydrogenase 3 maturation protein HypC
RA 2,858,752 +T pseudogene (395/2078 nt) flhA → formate hydrogenlyase transcriptional activator FlhA
RA 2,860,472 T→C *118* (TAA→TAG ygbA ← nitrous oxide‑stimulated promoter family protein
RA 2,862,725 A→G *219* (TAA→TAG pphB → protein‑serine/threonine phosphatase
RA 2,862,734 +T intergenic (+9/+41) pphB → / ← ygbI protein‑serine/threonine phosphatase/DNA‑binding transcriptional repressor YgbI
RA 2,879,252 A→G T122A (ACC→GCC)  iap → alkaline phosphatase isozyme conversion aminopeptidase
RA 2,896,236 A→G *424* (TAA→TAG
T4A (ACC→GCC) 
ygcN →
ygcO →
FAD‑dependent oxidoreductase
ferredoxin family protein
JC 2,896,268 +CAC coding (42/258 nt) ygcO → ferredoxin family protein
RA 2,904,848 A→G G216G (GGA→GGG ygcE → FGGY‑family carbohydrate kinase
RA 2,907,837 C→T intergenic (‑114/‑25) queE ← / → CXP41_RS15220 7‑carboxy‑7‑deazaguanine synthase QueE/cell envelope stress response protein YqcG
RA 2,913,061 T→C *112* (TAA→TAG mazF ← endoribonuclease MazF
RA 2,913,722 T→C *745* (TAA→TAG relA ← GTP pyrophosphokinase
RA 2,916,004 T→C *434* (TAA→TAG rlmD ← 23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD
RA 2,917,410 T→C S17P (TCG→CCG)  barA → two‑component sensor histidine kinase BarA
RA 2,938,222 A→G S112G (AGC→GGC)  fucI → L‑fucose isomerase
RA 2,939,236 C→T L450F (CTC→TTC)  fucI → L‑fucose isomerase
RA 2,940,107 G→A G112D (GGC→GAC)  fucK → L‑fuculokinase
RA 2,960,614 C→T A192A (GCG→GCA ptrA ← pitrilysin
RA 2,964,746 T→C *108* (TAA→TAG ppdC ← prepilin‑type N‑terminal cleavage/methylation domain‑containing protein
RA 2,968,493 T→C *749* (TAA→TAG ptsP ← phosphoenolpyruvate‑‑protein phosphotransferase
RA 2,972,656 A→G *230* (TAA→TAG mutH → DNA mismatch repair endonuclease MutH
RA 2,982,248 T→C V308A (GTT→GCT) 
*231* (TAA→TAG
lysR →
ygeA ←
DNA‑binding transcriptional regulator LysR
amino acid racemase
RA 2,985,593 T→C *279* (TAA→TAG kduI ← 5‑dehydro‑4‑deoxy‑D‑glucuronate isomerase
RA 2,986,326 C→T C35Y (TGC→TAC)  kduI ← 5‑dehydro‑4‑deoxy‑D‑glucuronate isomerase
RA 2,986,716 T→C *394* (TAA→TAG yqeF ← acetyl‑CoA C‑acetyltransferase
RA 2,996,161 A→G *73* (TAA→TAG CXP41_RS15615 → protein YgeI
RA 2,996,720 A→G *159* (TAA→TAG CXP41_RS15620 → lytic transglycosylase domain‑containing protein
RA 2,997,537 (A)8→7 intergenic (‑140/+83) CXP41_RS15625 ← / ← CXP41_RS24400 response regulator transcription factor/hypothetical protein
RA 2,997,620 T→C *144* (TAA→TAG CXP41_RS24400 ← hypothetical protein
RA 2,998,678 T→C *410* (TAA→TAG CXP41_RS15650 ← IS3‑like element IS2 family transposase
RA 2,999,995 T→C intergenic (‑89/+3) CXP41_RS15650 ← / ← CXP41_RS15660 IS3‑like element IS2 family transposase/glycoside hydrolase family 15 protein
RA 3,014,858 +G intergenic (+159/+61) arcC → / ← yqeB carbamate kinase/selenium‑dependent molybdenum cofactor biosynthesis protein YqeB
RA 3,016,563 +C intergenic (‑19/+28) yqeB ← / ← yqeC selenium‑dependent molybdenum cofactor biosynthesis protein YqeB/selenium cofactor biosynthesis protein YqeC
RA 3,016,591 T→C *257* (TAA→TAG yqeC ← selenium cofactor biosynthesis protein YqeC
RA 3,018,042 A→G *193* (TAA→TAG mocA → molybdenum cofactor cytidylyltransferase
RA 3,034,336 A→G S222S (TCA→TCG uacT → urate/proton symporter UacT
RA 3,037,850 C→T A246T (GCG→ACG)  prfB ← peptide chain release factor 2
RA 3,038,677 T→C *578* (TAA→TAG recJ ← single‑stranded‑DNA‑specific exonuclease RecJ
RA 3,058,577 A→G P29P (CCA→CCG fau → 5‑formyltetrahydrofolate cyclo‑ligase
RA 3,061,597 C→T G11G (GGG→GGA rpiA ← ribose‑5‑phosphate isomerase RpiA
RA 3,063,506 G→A S118N (AGC→AAC)  scpA → methylmalonyl‑CoA mutase
RA 3,070,477 T→C *212* (TAA→TAG argO ← arginine exporter ArgO
RA 3,081,156 C→T S3N (AGC→AAC)  cmtA ← PTS mannitol transporter subunit IICB
RA 3,084,181 C→T intergenic (‑242/‑36) tkt ← / → loiP transketolase/metalloprotease LoiP
RA 3,084,342 C→T D42D (GAC→GAT loiP → metalloprotease LoiP
RA 3,085,924 A→G C60R (TGT→CGT)  speB ← agmatinase
RA 3,087,765 G→A P151S (CCC→TCC)  speA ← biosynthetic arginine decarboxylase
RA 3,090,561 C→T intergenic (+397/‑27) metK → / → galP methionine adenosyltransferase/galactose/proton symporter
RA 3,096,538 C→T A283T (GCA→ACA)  yggR ← type IV pilus twitching motility protein PilT
RA 3,098,977 A→G *97* (TAA→TAG yggU → DUF167 family protein YggU
RA 3,103,344 (C)8→7 pseudogene (585/721 nt) yggN ← DUF2884 domain‑containing protein
RA 3,106,370 A→G *351* (TAA→TAG mutY → A/G‑specific adenine glycosylase
RA 3,119,176 T→C T748A (ACA→GCA)  sslE ← lipoprotein metalloprotease SslE
RA 3,131,341 A→G *255* (TAA→TAG glcC → transcriptional regulator GlcC
RA 3,131,886 A→G I200T (ATC→ACC)  yghO ← protein YghO
RA 3,133,646 T→C intergenic (+147/+3) CXP41_RS16295 → / ← yghQ IS5‑like element IS5 family transposase/lipopolysaccharide biosynthesis protein
RA 3,137,115 +T coding (680/744 nt) yghT → dTMP kinase
RA 3,137,127 A→G N231S (AAT→AGT)  yghT → dTMP kinase
RA 3,142,598 C→T G9S (GGC→AGC)  hypA ← hydrogenase maturation nickel metallochaperone HypA
RA 3,164,612 A→G L121S (TTG→TCG)  ftsP ← cell division protein FtsP
RA 3,174,183 T→C *111* (TAA→TAG ygiZ ← DUF2645 family protein
RA 3,179,025 A→G I38T (ATC→ACC)  cpdA ← 3',5'‑cyclic‑AMP phosphodiesterase
RA 3,179,162 T→C *141* (TAA→TAG yqiB ← DUF1249 family protein
RA 3,183,692 A→G S153G (AGT→GGT)  zupT → zinc transporter ZupT
RA 3,188,101 A→G *410* (TAA→TAG
R6G (AGG→GGG) 
CXP41_RS16620 →
CXP41_RS16625 →
IS3‑like element IS2 family transposase
fimbrial biogenesis outer membrane usher protein
RA 3,188,274 A→G T63T (ACA→ACG CXP41_RS16625 → fimbrial biogenesis outer membrane usher protein
RA 3,192,382 A→G *355* (TAA→TAG yqiI → fimbrial protein
RA 3,200,115 C→T A71A (GCG→GCA glnE ← bifunctional [glutamate‑‑ammonia ligase]‑adenylyl‑L‑tyrosine phosphorylase/[glutamate‑‑ammonia‑ligase] adenylyltransferase
RA 3,201,892 A→G intergenic (‑241/‑1) ygiF ← / → ygiM inorganic triphosphatase/TIGR04211 family SH3 domain‑containing protein
RA 3,206,010 T→C *311* (TAA→TAG ttdR ← DNA‑binding transcriptional activator TtdR
RA 3,219,051 T→C K238E (AAG→GAG)  aer ← aerotaxis sensor receptor Aer
RA 3,220,876 A→G T233A (ACT→GCT)  ygjG → putrescine aminotransferase
RA 3,232,860 T→C N170N (AAT→AAC fadH → NADPH‑dependent 2,4‑dienoyl‑CoA reductase
RA 3,239,247 (T)6→7 intergenic (+264/‑18) ygjR → / → alx Gfo/Idh/MocA family oxidoreductase/TerC family membrane protein Alx
RA 3,249,624 C→T intergenic (+117/‑30) mzrA → / → yqjC EnvZ/OmpR regulon moderator MzrA/DUF1090 family protein YqjC
RA 3,255,705 A→G *234* (TAA→TAG yhaK → pirin family protein
RA 3,258,360 A→G G112G (GGT→GGC cyuP ← amino acid permease
RA 3,266,812 T→C *313* (TAA→TAG tdcA ← transcriptional regulator TdcA
RA 3,269,697 G→A G200S (GGT→AGT)  yhaC → YhaC family protein
RA 3,270,287 A→G *396* (TAA→TAG yhaC → YhaC family protein
RA 3,272,617 C→T A276T (GCG→ACG)  garR ← 2‑hydroxy‑3‑oxopropionate reductase
RA 3,278,411 T→C F130F (TTT→TTC yhaV → type II toxin‑antitoxin system ribonuclease toxin YhaV
RA 3,278,552 T→C I267V (ATC→GTC)  agaR ← aga operon transcriptional regulator AgaR
RA 3,286,375 T→C V71V (GTT→GTC agaD → PTS galactosamine transporter subunit IID
RA 3,297,669 A→G *192* (TAA→TAG dolP → division/outer membrane stress‑associated lipid‑binding lipoprotein
RA 3,298,720 C→T G35E (GGA→GAA)  yraQ ← permease
RA 3,300,123 G→A T155T (ACG→ACA yhbO → protein/nucleic acid deglycase
RA 3,300,684 A→G T12A (ACC→GCC)  yhbQ → DNA damage response exodeoxyribonuclease YhbQ
RA 3,302,284 A→G S39G (AGC→GGC)  ubiU → peptidase U32 family protein
RA 3,305,140 A→G *336* (TAA→TAG yhbW → luciferase‑like monooxygenase
RA 3,308,725 T→C *295* (TAA→TAG nlpI ← lipoprotein NlpI
RA 3,309,553 A→G C19C (TGT→TGC nlpI ← lipoprotein NlpI
RA 3,309,690 (C)5→6 intergenic (‑81/+27) nlpI ← / ← pnp lipoprotein NlpI/polyribonucleotide nucleotidyltransferase
RA 3,309,691 A→G intergenic (‑82/+26) nlpI ← / ← pnp lipoprotein NlpI/polyribonucleotide nucleotidyltransferase
RA 3,321,017 C→T E427E (GAG→GAA yhbX ← phosphoethanolamine transferase
RA 3,328,787 C→A intergenic (+20/+136) yhbY → / ← greA ribosome assembly RNA‑binding protein YhbY/transcription elongation factor GreA
RA 3,331,042 (T)5→4 pseudogene (1396/1435 nt) dacB → serine‑type D‑Ala‑D‑Ala carboxypeptidase
RA 3,331,081 A→G pseudogene (1435/1435 nt) dacB → serine‑type D‑Ala‑D‑Ala carboxypeptidase
RA 3,341,273 C→T S105L (TCA→TTA)  yrbG → calcium/sodium antiporter
RA 3,347,754 A→G *164* (TAA→TAG ptsN → PTS IIA‑like nitrogen regulatory protein PtsN
RA 3,353,806 T→C *310* (TAA→TAG yhcC ← TIGR01212 family radical SAM protein
RA 3,361,454 A→G intergenic (+153/‑407) gltD → / → gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
RA 3,366,349 A→G intergenic (+111/+38) CXP41_RS17555 → / ← CXP41_RS17560 YhcE family protein/IS5‑like element IS5 family transposase
RA 3,367,638 A→G R10G (AGA→GGA)  yhcF → DUF1120 domain‑containing protein
RA 3,372,939 A→G G107G (GGT→GGC nanT ← sialic acid transporter NanT
RA 3,386,542 T→C *91* (TAA→TAG yhcO ← barstar family protein
RA 3,392,785 C→T intergenic (‑72/+358) tldD ← / ← yhdP metalloprotease TldD/AsmA2 domain‑containing protein YhdP
RA 3,399,560 T→C M1M (ATG→GTG) †
*368* (TAA→TAG
mreD ←
mreC ←
rod shape‑determining protein MreD
rod shape‑determining protein MreC
RA 3,401,458 G→A R105R (CGC→CGT mreB ← rod shape‑determining protein MreB
RA 3,411,091 C→T P43S (CCT→TCT)  dusB → tRNA dihydrouridine synthase DusB
RA 3,433,680 (C)7→6 pseudogene (567/1126 nt) dprA ← DNA‑protecting protein DprA
RA 3,434,451 A→G T26A (ACA→GCA)  def → peptide deformylase
RA 3,435,263 A→G T122A (ACA→GCA)  fmt → methionyl‑tRNA formyltransferase
RA 3,439,827 T→C *123* (TAA→TAG yhdN ← DUF1992 domain‑containing protein
RA 3,441,636 A→G I27T (ATC→ACC)  rpoA ← DNA‑directed RNA polymerase subunit alpha
RA 3,458,302 A→G T414A (ACC→GCC)  gspD → type II secretion system secretin GspD
RA 3,466,999 G→A P138L (CCT→CTT)  bfr ← bacterioferritin
RA 3,479,278 T→C *67* (TAA→TAG yheV ← YheV family putative zinc ribbon protein
RA 3,479,488 T→C *602* (TAA→TAG kefB ← glutathione‑regulated potassium‑efflux system protein KefB
RA 3,483,653 C→T P560L (CCG→CTG)  yheS → ABC transporter ATP‑binding protein
RA 3,504,638 A→G *262* (TAA→TAG frlD → fructoselysine 6‑kinase
RA 3,508,628 G→A pseudogene (648/878 nt) php ← phosphotriesterase‑related protein
RA 3,509,139 +C pseudogene (137/878 nt) php ← phosphotriesterase‑related protein
RA 3,512,432 (A)9→8 pseudogene (599/907 nt) CXP41_RS18440 ← hypothetical protein
RA 3,516,412 C→T C63Y (TGT→TAT)  dam ← adenine‑specific DNA‑methyltransferase
RA 3,516,790 C→T K401K (AAG→AAA damX ← cell division protein DamX
RA 3,532,291 C→T A279T (GCA→ACA)  yhgE ← DUF4153 domain‑containing protein
RA 3,535,342 T→C R405G (AGG→GGG)  envZ ← two‑component system sensor histidine kinase EnvZ
RA 3,544,760 T→C *257* (TAA→TAG bioH ← pimeloyl‑ACP methyl ester esterase BioH
RA 3,546,251 A→G *228* (TAA→TAG gntX → DNA utilization protein GntX
RA 3,548,672 T→C *695* (TAA→TAG malQ ← 4‑alpha‑glucanotransferase
RA 3,556,719 G→A H273Y (CAC→TAC)  rtcA ← RNA 3'‑terminal phosphate cyclase
RA 3,567,287 T→C *478* (TAA→TAG glgA ← glycogen synthase GlgA
RA 3,567,938 T→C L261L (TTA→TTG glgA ← glycogen synthase GlgA
RA 3,584,141 A→G *139* (TAA→TAG CXP41_RS18760 → YrhA family protein
RA 3,588,057 T→C I143T (ATT→ACT) 
*248* (TAA→TAG
yhhA →
ugpQ ←
DUF2756 family protein
glycerophosphodiester phosphodiesterase
RA 3,590,507 C→T G70S (GGC→AGC)  ugpE ← sn‑glycerol‑3‑phosphate ABC transporter permease UgpE
RA 3,599,244 G→A Q368* (CAA→TAA)  livJ ← branched chain amino acid ABC transporter substrate‑binding protein LivJ
RA 3,614,779 C→T I142I (ATC→ATT nikA → nickel ABC transporter substrate‑binding protein
RA 3,644,586 A→G G428G (GGT→GGC prlC ← oligopeptidase A
RA 3,652,831 A→G intergenic (+107/+38) CXP41_RS19090 → / ← CXP41_RS19095 hypothetical protein/IS5‑like element IS5 family transposase
RA 3,659,580 A→G *176* (TAA→TAG gadE → acid resistance transcriptional activator GadE
RA 3,665,051 (G)7→6 pseudogene (256/730 nt) gadW ← acid resistance transcriptional activator GadW
RA 3,665,674 T→C *275* (TAA→TAG gadX ← acid resistance transcriptional activator GadX
RA 3,684,318 T→C *663* (TAA→TAG hmsP ← biofilm formation regulator HmsP
RA 3,695,528 A→G Y133H (TAT→CAT)  bcsA ← UDP‑forming cellulose synthase catalytic subunit
RA 3,696,685 T→C *63* (TAA→TAG bcsR ← cellulose biosynthesis protein BcsR
RA 3,710,250 (C)7→6 pseudogene (915/1693 nt) eptB ← kdo(2)‑lipid A phosphoethanolamine 7''‑transferase
RA 3,720,457 A→G *97* (TAA→TAG yiaG → HTH‑type transcriptional regulator
RA 3,728,808 (C)10→8 pseudogene (1254‑1255/1457 nt) xylB ← xylulokinase
RA 3,732,671 A→G S284G (AGT→GGT)  xylF → D‑xylose ABC transporter substrate‑binding protein
RA 3,733,010 A→G E40G (GAG→GGG)  xylG → D‑xylose ABC transporter ATP‑binding protein
RA 3,736,848 A→G *393* (TAA→TAG xylR → DNA‑binding transcriptional regulator XylR
RA 3,736,852 Δ1 bp intergenic (+4/+193) xylR → / ← bax DNA‑binding transcriptional regulator XylR/protein bax
RA 3,736,968 T→C intergenic (+120/+77) xylR → / ← bax DNA‑binding transcriptional regulator XylR/protein bax
RA 3,743,921 T→C I172I (ATT→ATC galK → galactokinase
RA 3,752,014 A→G *287* (TAA→TAG
K3E (AAG→GAG) 
sgbU →
araD →
L‑ribulose‑5‑phosphate 3‑epimerase
L‑ribulose‑5‑phosphate 4‑epimerase
RA 3,763,772 T→C T36A (ACG→GCG)  yibF ← glutathione S‑transferase
RA 3,768,238 A→G *1378* (TAA→TAG rhsA → RHS element protein RhsA
RA 3,769,101 A→G *281* (TAA→TAG yibA → HEAT repeat domain‑containing protein
RA 3,775,524 C→T A441V (GCT→GTT)  mtlA → PTS mannitol transporter subunit IICBA
RA 3,782,939 A→G *397* (TAA→TAG lldD → quinone‑dependent L‑lactate dehydrogenase
RA 3,783,610 A→G *158* (TAA→TAG trmL → tRNA (uridine(34)/cytosine(34)/5‑ carboxymethylaminomethyluridine(34)‑2'‑O)‑ methyltransferase TrmL
RA 3,790,969 T→C V316A (GTT→GCT) 
*345* (TAA→TAG
yibQ →
waaH ←
divergent polysaccharide deacetylase family protein
UDP‑glucuronate:LPS(HepIII) glycosyltransferase
RA 3,791,274 A→G C244R (TGC→CGC)  waaH ← UDP‑glucuronate:LPS(HepIII) glycosyltransferase
RA 3,794,748 T→C *286* (TAA→TAG yibB ← protein YibB
RA 3,812,226 A→G *160* (TAA→TAG coaD → pantetheine‑phosphate adenylyltransferase
RA 3,817,731 (A)9→8 intergenic (‑41/+26) pyrE ← / ← rph orotate phosphoribosyltransferase/ribonuclease PH
RA 3,817,786 T→C pseudogene (687/716 nt) rph ← ribonuclease PH
RA 3,820,507 A→G *275* (TAA→TAG dinD → DNA damage‑inducible protein D
RA 3,821,411 T→C H205H (CAT→CAC
*561* (TAA→TAG
yicG →
ligB ←
trimeric intracellular cation channel family protein
NAD‑dependent DNA ligase LigB
RA 3,840,060 A→G *395* (TAA→TAG setC → sugar efflux transporter
RA 3,844,378 T→C *445* (TAA→TAG adeQ ← adenine permease AdeQ
RA 3,851,714 +C pseudogene (345/1502 nt) uhpB ← signal transduction histidine‑protein kinase/phosphatase UhpB
RA 3,854,812 T→C *33* (TAA→TAG ivbL ← ilvB operon leader peptide IvbL
RA 3,857,882 T→C N4S (AAC→AGC) 
*116* (TAA→TAG
yidG ←
yidH ←
DUF202 domain‑containing protein
YidH family protein
RA 3,864,419 T→C pseudogene (1103/1613 nt) CXP41_RS20140 ← PTS sugar transporter subunit IIB
RA 3,864,439 +C pseudogene (1083/1613 nt) CXP41_RS20140 ← PTS sugar transporter subunit IIB
JC 3,864,444 +GCC pseudogene (1078/1613 nt) CXP41_RS20140 ← PTS sugar transporter subunit IIB
RA 3,872,359 A→G *355* (TAA→TAG
G445G (GGT→GGC
cbrA →
dgoT ←
colicin M resistance lipid reductase CbrA
MFS transporter
RA 3,884,842 T→C D269G (GAT→GGT)  dnaA ← chromosomal replication initiator protein DnaA
RA 3,894,373 A→G T281A (ACG→GCG)  mdtL → multidrug efflux MFS transporter MdtL
RA 3,898,969 (G)5→4 pseudogene (278/667 nt) yieH → 6‑phosphogluconate phosphatase
RA 3,899,358 A→G pseudogene (667/667 nt) yieH → 6‑phosphogluconate phosphatase
RA 3,900,528 A→G *196* (TAA→TAG cbrC → PF03691 family colicin E2 tolerance protein CbrC
RA 3,910,433 G→A intergenic (‑148/+35) pstB ← / ← pstA phosphate ABC transporter ATP‑binding protein PstB/phosphate ABC transporter permease PstA
RA 3,915,245 A→G C115R (TGT→CGT)  glmS ← glutamine‑‑fructose‑6‑phosphate transaminase (isomerizing)
RA 3,922,869 T→C *80* (TAA→TAG atpE ← F0F1 ATP synthase subunit C
RA 3,923,434 T→C T179T (ACA→ACG atpB ← F0F1 ATP synthase subunit A
RA 3,939,087 A→G *297* (TAA→TAG rbsB → ribose ABC transporter substrate‑binding protein RbsB
RA 3,941,138 A→G *331* (TAA→TAG
F465S (TTT→TCT) 
rbsR →
mdtD ←
ribose operon transcriptional repressor RbsR
multidrug transporter subunit MdtD
RA 3,952,339 A→G *33* (TAA→TAG ilvL → ilv operon leader peptide
RA 3,958,794 A→G *515* (TAA→TAG ilvA → threonine ammonia‑lyase, biosynthetic
RA 3,963,836 C→G A414G (GCC→GGC)  rep → DNA helicase Rep
RA 3,965,748 T→C H134R (CAC→CGC)  gppA ← guanosine‑5'‑triphosphate,3'‑diphosphate diphosphatase
RA 3,971,934 C→T pseudogene (985/1048 nt) wzzE → ECA polysaccharide chain length modulation protein
RA 3,971,952 (G)7→6 pseudogene (1003/1048 nt) wzzE → ECA polysaccharide chain length modulation protein
RA 3,971,997 A→G pseudogene (1048/1048 nt) wzzE → ECA polysaccharide chain length modulation protein
RA 3,978,525 C→T L110F (CTT→TTT)  wzxE → lipid III flippase WzxE
RA 3,982,878 (G)8→6 pseudogene (72‑73/1388 nt) yifK → amino acid permease
RA 3,986,115 A→G *412* (TAA→TAG aslB → anaerobic sulfatase maturase
RA 3,988,608 T→C *399* (TAA→TAG hemY ← protoheme IX biogenesis protein HemY
RA 3,993,976 T→C L301P (CTA→CCA)  cyaA → class I adenylate cyclase
RA 4,004,735 T→C *139* (TAA→TAG CXP41_RS20835 ← protein YigG
RA 4,009,615 A→G *610* (TAA→TAG recQ → ATP‑dependent DNA helicase RecQ
RA 4,020,682 A→G *476* (TAA→TAG rmuC → DNA recombination protein RmuC
RA 4,026,258 A→G *261* (TAA→TAG
L162L (CTT→CTC
tatD →
rfaH ←
3'‑5' ssDNA/RNA exonuclease TatD
transcription/translation regulatory transformer protein RfaH
RA 4,056,361 G→A T280T (ACC→ACT glnG ← nitrogen regulation protein NR(I)
RA 4,063,079 A→G *237* (TAA→TAG yihL → GntR family transcriptional regulator
RA 4,077,376 A→G *262* (TAA→TAG csqR → DeoR/GlpR family DNA‑binding transcription regulator
RA 4,079,391 A→G intergenic (+17/‑28) dtd → / → fabY D‑aminoacyl‑tRNA deacylase/fatty acid biosynthesis protein FabY
RA 4,080,360 A→G *314* (TAA→TAG fabY → fatty acid biosynthesis protein FabY
RA 4,108,242 A→G *167* (TAA→TAG cpxP → cell‑envelope stress modulator CpxP
RA 4,119,045 A→G C34R (TGC→CGC)  glpK ← glycerol kinase GlpK
RA 4,139,151 G→A S143S (AGC→AGT yijF ← DUF1287 domain‑containing protein
RA 4,149,401 A→G *114* (TAA→TAG
I280T (ATT→ACT) 
frwD →
yijO ←
PTS fructose‑like transporter subunit IIB
AraC family transcriptional regulator
RA 4,150,603 T→C S529G (AGC→GGC)  eptC ← phosphoethanolamine transferase CptA
RA 4,160,508 G→A G33S (GGC→AGC)  oxyR → DNA‑binding transcriptional regulator OxyR
RA 4,202,215 T→C intergenic (+199/‑3) yjaG → / → hupA YjaG family protein/DNA‑binding protein HU‑alpha
RA 4,204,740 T→G V298G (GTA→GGA)  zraS → two‑component system sensor histidine kinase ZraS
RA 4,206,567 A→G *442* (TAA→TAG
N429N (AAT→AAC
zraR →
purD ←
sigma‑54‑dependent response regulator transcription factor ZraR
phosphoribosylamine‑‑glycine ligase
RA 4,215,602 T→C *148* (TAA→TAG yjaB ← acetyltransferase
RA 4,220,737 G→A A74T (GCG→ACG)  aceK → bifunctional isocitrate dehydrogenase kinase/phosphatase
RA 4,234,674 A→G V161A (GTG→GCG)  lysC ← lysine‑sensitive aspartokinase 3
RA 4,270,410 (T)8→7 intergenic (+181/+322) tyrB → / ← CXP41_RS22090 aromatic amino acid transaminase/protein YjbS
RA 4,270,732 T→C *68* (TAA→TAG CXP41_RS22090 ← protein YjbS
RA 4,281,772 G→A intergenic (+21/‑131) ghxP → / → yjcE guanine/hypoxanthine transporter GhxP/Na+/H+ antiporter
RA 4,299,593 T→C N567D (AAC→GAC)  fdhF ← formate dehydrogenase subunit alpha
RA 4,304,165 G→A T280I (ACC→ATC)  mdtO ← multidrug efflux transporter permease subunit MdtO
RA 4,319,334 T→C S163G (AGC→GGC)  phnL ← phosphonate C‑P lyase system protein PhnL
RA 4,326,801 G→A P97L (CCG→CTG)  phnC ← phosphonate ABC transporter ATP‑binding protein
RA 4,327,077 G→A T5I (ACC→ATC)  phnC ← phosphonate ABC transporter ATP‑binding protein
RA 4,331,820 (G)7→6 pseudogene (473/817 nt) rdcB → YjcZ‑like family protein
RA 4,333,560 T→C V378A (GTG→GCG)  proP → glycine betaine/L‑proline transporter ProP
RA 4,338,331 G→A S209S (AGC→AGT adiC ← arginine/agmatine antiporter
RA 4,348,012 G→A T414I (ACC→ATC)  fumB ← class I fumarate hydratase
RA 4,354,806 A→G *99* (TAA→TAG ghoS → type V toxin‑antitoxin system endoribonuclease antitoxin GhoS
RA 4,355,007 A→G *58* (TAA→TAG ghoT → type V toxin‑antitoxin system toxin GhoT
RA 4,379,115 T→C H105H (CAT→CAC
*178* (TAA→TAG
sugE →
blc ←
quaternary ammonium compound efflux SMR transporter SugE
lipocalin Blc
RA 4,388,798 T→C A833A (GCA→GCG mscM ← miniconductance mechanosensitive channel MscM
RA 4,391,860 G→A H143Y (CAC→TAC)  asd ← archaetidylserine decarboxylase
RA 4,396,984 T→C G331G (GGT→GGC nnr → bifunctional ADP‑dependent NAD(P)H‑hydrate dehydratase/NAD(P)H‑hydrate epimerase
RA 4,424,719 T→C V203A (GTC→GCC)  ulaD → 3‑keto‑L‑gulonate‑6‑phosphate decarboxylase UlaD
RA 4,426,312 A→G *229* (TAA→TAG ulaF → L‑ribulose‑5‑phosphate 4‑epimerase UlaF
RA 4,426,442 T→C pseudogene (275/275 nt) yjfY ← DUF1471 family protein YjfY
RA 4,426,468 +C pseudogene (249/275 nt) yjfY ← DUF1471 family protein YjfY
RA 4,427,759 A→G *105* (TAA→TAG priB → primosomal replication protein N
RA 4,430,004 T→C pseudogene (386/402 nt)
*213* (TAA→TAG
CXP41_RS22940 →
ytfB ←
TetR/AcrR family transcriptional regulator
cell division protein YtfB
RA 4,435,089 T→C *287* (TAA→TAG qorB ← NAD(P)H:quinone oxidoreductase
RA 4,443,463 T→C *213* (TAA→TAG msrA ← peptide‑methionine (S)‑S‑oxide reductase MsrA
RA 4,443,932 C→T G57E (GGG→GAG)  msrA ← peptide‑methionine (S)‑S‑oxide reductase MsrA
RA 4,449,793 +T pseudogene (3757/3779 nt) tamB → autotransporter assembly complex protein TamB
RA 4,449,815 A→G pseudogene (3779/3779 nt) tamB → autotransporter assembly complex protein TamB
RA 4,476,063 (A)7→6 pseudogene (6/585 nt) bdcR → TetR/AcrR family transcriptional regulator
RA 4,476,316 A→G pseudogene (259/585 nt) bdcR → TetR/AcrR family transcriptional regulator
RA 4,477,488 (G)7→6 pseudogene (127/1816 nt) CXP41_RS23185 → hypothetical protein
JC 4,492,041 +ATACGTGTAAT intergenic (‑52/+15) yjgR ← / ← idnR DUF853 domain‑containing protein/DNA‑binding transcriptional regulator IdnR
RA 4,492,056 T→C *333* (TAA→TAG idnR ← DNA‑binding transcriptional regulator IdnR
RA 4,492,290 T→C A255A (GCA→GCG idnR ← DNA‑binding transcriptional regulator IdnR
RA 4,501,415 A→G *410* (TAA→TAG CXP41_RS23285 → IS3‑like element IS2 family transposase
RA 4,501,958 T→C pseudogene (731/1181 nt) CXP41_RS23290 ← phosphoethanolamine transferase
RA 4,501,975 T→C pseudogene (714/1181 nt) CXP41_RS23290 ← phosphoethanolamine transferase
RA 4,505,921 A→G intergenic (‑557/‑52) insG ← / → nanX IS4‑like element IS4 family transposase/MFS transporter
RA 4,509,378 A→G intergenic (+9/+3) CXP41_RS23345 → / ← CXP41_RS23350 transposase/IS30‑like element IS30 family transposase
RA 4,512,103 G→A intergenic (+55/+502) CXP41_RS24315 → / ← fecE hypothetical protein/Fe(3+) dicitrate ABC transporter ATP‑binding protein FecE
RA 4,512,605 T→C pseudogene (768/768 nt) fecE ← Fe(3+) dicitrate ABC transporter ATP‑binding protein FecE
RA 4,513,061 T→C pseudogene (312/768 nt) fecE ← Fe(3+) dicitrate ABC transporter ATP‑binding protein FecE
RA 4,517,199 T→C D465G (GAC→GGC)  fecA ← Fe(3+) dicitrate transport protein FecA
RA 4,520,929 A→G pseudogene (488/698 nt) CXP41_RS23410 → IS1‑like element IS1F family transposase
RA 4,529,477 G→A P140L (CCG→CTG)  sgcA ← SgcA family PTS sugar transporter subunit IIA
RA 4,537,356 T→C pseudogene (651/1241 nt) yjhR → helicase YjhR
RA 4,540,700 T→C *239* (TAA→TAG nanC ← N‑acetylneuraminic acid outer membrane channel NanC
RA 4,542,898 (A)6→7 pseudogene (27/602 nt) fimB → type 1 fimbria switch DNA invertase FimB
RA 4,543,473 A→G pseudogene (602/602 nt) fimB → type 1 fimbria switch DNA invertase FimB
RA 4,567,378 A→C F129L (TTT→TTG yjiM ← double‑cubane‑cluster‑containing anaerobic reductase
RA 4,567,880 T→C *427* (TAA→TAG yjiN ← DUF445 domain‑containing protein
RA 4,571,223 A→G pseudogene (312/921 nt) CXP41_RS24325 → Rpn family recombination‑promoting nuclease/putative transposase
RA 4,579,872 T→C M1M (ATG→GTG) †
*460* (TAA→TAG
mcrC ←
mcrB ←
5‑methylcytosine‑specific restriction endonuclease system specificity protein McrC
5‑methylcytosine‑specific restriction endonuclease subunit McrB
RA 4,583,535 A→G A476A (GCT→GCC hsdM ← type I restriction‑modification system methyltransferase
RA 4,606,116 A→G *242* (TAA→TAG
K15E (AAA→GAA) 
yjjQ →
bglJ →
response regulator transcription factor
DNA‑binding transcriptional activator BglJ
RA 4,608,009 (G)9→8 noncoding (72/88 nt) CXP41_RS23865 ← tRNA‑Leu
RA 4,608,154 G→A noncoding (48/87 nt) CXP41_RS23870 ← tRNA‑Leu
RA 4,611,252 (C)8→7 intergenic (+14/‑78) yjjG → / → prfC pyrimidine 5'‑nucleotidase/peptide chain release factor 3
RA 4,614,205 A→G *54* (TAA→TAG ytjA → DUF1328 domain‑containing protein
RA 4,616,176 A→G *260* (TAA→TAG yjjV → metal‑dependent hydrolase
RA 4,621,820 G→A G104E (GGA→GAA)  deoB → phosphopentomutase
RA 4,625,008 T→C *339* (TAA→TAG lplA ← lipoate‑‑protein ligase LplA
RA 4,640,027 A→G *475* (TAA→TAG creC → two‑component system sensor histidine kinase CreC

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP025268 261993–262008 296274–296260 34253–34282 203 [200] [188] 217 [CXP41_RS01280]–intF [CXP41_RS01280],ykfI,yafW,ykfH,ykfG,yafX,ykfF,CXP41_RS01315,CXP41_RS01320,CXP41_RS01325,CXP41_RS01330,yafZ,ykfA,perR,CXP41_RS01355,CXP41_RS01360,CXP41_RS01365,ykfC,CXP41_RS01385,mmuP,mmuM,fbpC,CXP41_RS01405,CXP41_RS01410,CXP41_RS01410,CXP41_RS01420,CXP41_RS01425,yagB,CXP41_RS24560,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,CXP41_RS01470,CXP41_RS01480,CXP41_RS01480,CXP41_RS01490,yagK,yagL,CXP41_RS01505,ykgV,CXP41_RS01515,intF
* * ÷ NZ_CP025268 695805 695988 184 204 [196] [198] 202 [CXP41_RS03680]–CXP41_RS03685 [CXP41_RS03680],CXP41_RS03685
* * ÷ NZ_CP025268 805180 817515 12336 202 [195] [197] 210 [ybhC]–[bioF] [ybhC],CXP41_RS04245,CXP41_RS04250,CXP41_RS04255,CXP41_RS04260,CXP41_RS04265,CXP41_RS04270,CXP41_RS04280,CXP41_RS04285,CXP41_RS04290,bet,CXP41_RS04300,kil,CXP41_RS24110,CXP41_RS04315,CXP41_RS04320,CXP41_RS04325,CXP41_RS24585,CXP41_RS04335,CXP41_RS04340,CXP41_RS04345,tetR(B),CXP41_RS04355,CXP41_RS24590,[bioF]
* * ÷ NZ_CP025268 1057254–1057381 1057497–1057425 45–244 201 [192] [189] 207 [CXP41_RS24600] [CXP41_RS24600]
* * ÷ NZ_CP025268 2861104 2861955 852 208 [187] [195] 219 ble‑Sh ble‑Sh
* * ÷ NZ_CP025268 3424449–3424919 3425229–3424923 5–781 201 [196] [200] 205 [rrf]–[CXP41_RS17880] [rrf],[CXP41_RS17880]
* * ÷ NZ_CP025268 3743225 3743406 182 203 [200] [0] 471 [galK] [galK]
* * ÷ NZ_CP025268 3744554 3744685 132 546 [0] [179] 216 [galK]–[yiaK] [galK],[yiaK]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP025268 66565 =231 (0.370)178 (0.430)
+43 bp
57/180 1.7 54.6% intergenic (‑14/+101) araD/araA L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase
?NZ_CP025268 = 66606 207 (0.340)intergenic (‑55/+60) araD/araA L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase
* ? NZ_CP025268 = 66614222 (0.360)88 (0.540)
+98 bp
24/70 1.1 55.1% intergenic (‑63/+52) araD/araA L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase
?NZ_CP025268 66628 = 323 (0.520)intergenic (‑77/+38) araD/araA L‑ribulose‑5‑phosphate 4‑epimerase/L‑arabinose isomerase
* ? NZ_CP025268 787879 =2 (0.000)467 (0.760) 118/264 0.5 99.8% coding (17/1050 nt) galM galactose‑1‑epimerase
?NZ_CP025268 3743407 = 0 (0.000)coding (2/1149 nt) galK galactokinase
* ? NZ_CP025268 = 7878803 (0.000)542 (0.880) 124/264 0.4 99.7% coding (16/1050 nt) galM galactose‑1‑epimerase
?NZ_CP025268 = 3744553 0 (0.000)coding (1148/1149 nt) galK galactokinase
* ? NZ_CP025268 1214891 =734 (1.190)229 (0.420) 79/234 1.5 28.4% coding (290/630 nt) CXP41_RS06370 protein StfP
?NZ_CP025268 1216719 = 508 (0.940)coding (40/540 nt) CXP41_RS06385 phage tail protein
* ? NZ_CP025268 1292725 =484 (0.780)191 (0.370) 67/224 2.0 44.5% intergenic (+182/+2) narI/CXP41_RS06830 respiratory nitrate reductase subunit gamma/RtT sRNA
?NZ_CP025268 = 1293258 68 (0.130)intergenic (‑44/+3) CXP41_RS06840/CXP41_RS06845 RtT sRNA/tRNA‑Tyr
* ? NZ_CP025268 = 12931011 (0.000)181 (0.350) 64/226 2.3 52.5% noncoding (114/132 nt) CXP41_RS06840 RtT sRNA
?NZ_CP025268 1293574 = 327 (0.620)noncoding (66/85 nt) CXP41_RS06855 tRNA‑Tyr
* ? NZ_CP025268 = 1402056NA (NA)1197 (1.940) 154/266 0.1 99.8% intergenic (+146/‑127) CXP41_RS07410/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP025268 1913625 = 3 (0.000)intergenic (‑46/‑113) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
* ? NZ_CP025268 = 191362821 (0.030)790 (1.280) 156/266 0.1 97.4% intergenic (‑49/‑110) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
?NZ_CP025268 = 2106982 NA (NA)intergenic (‑68/+3) CXP41_RS11235/wbbL IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL
* ? NZ_CP025268 4621386 =38 (0.060)814 (1.330)
+A
140/264 0.2 95.6% coding (1242/1314 nt) deoA thymidine phosphorylase
?NZ_CP025268 = 4621393 NA (NA)coding (1249/1314 nt) deoA thymidine phosphorylase