mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 46,798 | A→G | 10.7% | D331G (GAT→GGT) | Y75_RS00235 → | MFS transporter |
| RA | 65,583 | T→G | 8.1% | T66T (ACA→ACC) | polB ← | DNA polymerase II |
| RA | 65,670 | T→G | 17.0% | A37A (GCA→GCC) | polB ← | DNA polymerase II |
| RA | 99,078 | A→T | 9.1% | I226F (ATC→TTC) | ftsW → | cell division protein FtsW |
| RA | 109,454 | T→G | 9.0% | G392G (GGT→GGG) | secA → | preprotein translocase subunit SecA |
| RA | 161,619 | A→G | 15.5% | I138T (ATC→ACC) | thpR ← | RNA 2',3'‑cyclic phosphodiesterase |
| RA | 228,688 | Δ1 bp | 100% | intergenic (+9/‑70) | Y75_RS01035 → / → rrf | 23S ribosomal RNA/5S ribosomal RNA |
| RA | 249,538 | T→G | 28.1% | H187P (CAC→CCC) | flhA ← | flagellar type III secretion system protein FlhA |
| RA | 282,321 | T→C | 12.3% | S274P (TCC→CCC) | yagE → | 2‑keto‑3‑deoxygluconate aldolase |
| RA | 359,586 | T→G | 18.9% | V133G (GTG→GGG) | cynX → | cyanate transporter CynX |
| RA | 432,873 | T→G | 25.8% | G65G (GGT→GGG) | ribD → | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase RibD |
| RA | 438,431 | A→T | 20.3% | I324N (ATC→AAC) | dxs ← | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| RA | 438,444 | T→C | 15.9% | S320G (AGC→GGC) | dxs ← | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| RA | 463,430 | T→G | 5.5% | Y90* (TAT→TAG) | Y75_RS02275 → | hypothetical protein |
| RA | 547,694 | A→G | 100% | E38E (GAA→GAG) | Y75_RS02655 → | hypothetical protein |
| RA | 547,831:1 | +G | 100% | coding (251/261 nt) | Y75_RS02655 → | hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD |
| MC JC | 654,214 | Δ1,199 bp | 100% | Y75_RS03225–[dcuC] | Y75_RS03225, [dcuC] | |
| RA | 696,963 | T→G | 9.1% | intergenic (‑37/+1) | Y75_RS03440 ← / ← Y75_RS03445 | tRNA‑Gln/tRNA‑Gln |
| JC | 705,229 | +CCG | 95.0% | coding (864/1947 nt) | nagE → | PTS N‑acetyl glucosamine transporter subunit IIABC |
| RA | 949,176 | G→T | 18.9% | P272Q (CCA→CAA) | Y75_RS04685 ← | LysR family transcriptional regulator |
| RA | 954,796 | C→G | 15.6% | P31P (CCG→CCC) | focA ← | formate transporter FocA |
| RA | 954,805 | C→T | 11.1% | T28T (ACG→ACA) | focA ← | formate transporter FocA |
| RA | 954,815 | T→A | 17.2% | Y25F (TAT→TTT) | focA ← | formate transporter FocA |
| RA | 1,065,700 | C→T | 100% | R415C (CGT→TGT) | Y75_RS05220 → | YccE family protein |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | Y75_RS05355 → | GGDEF domain‑containing protein |
| RA | 1,303,712 | A→G | 100% | S273G (AGC→GGC) | oppA → | oligopeptide ABC transporter substrate‑binding protein OppA |
| MC JC | 1,413,639 | Δ23,060 bp | 100% | [ttcA]–Y75_RS24865 | 33 genes [ttcA], Y75_RS23540, xisR, rcbA, ralR, recT, recE, Y75_RS07140, Y75_RS07145, kilR, Y75_RS07155, Y75_RS07160, racR, ydaS, Y75_RS07175, Y75_RS07180, Y75_RS07185, Y75_RS07190, rzoD, Y75_RS07200, Y75_RS07205, Y75_RS07210, Y75_RS07215, Y75_RS07220, Y75_RS07225, Y75_RS07230, Y75_RS07235, Y75_RS23570, Y75_RS07255, Y75_RS07260, ydfK, Y75_RS24860, Y75_RS24865 |
|
| RA | 1,531,018 | A→C | 12.8% | H389P (CAC→CCC) | Y75_RS07695 → | RHS repeat protein |
| RA | 1,703,339 | A→G | 10.4% | G223G (GGA→GGG) | malY → | bifunctional maltose regulon transcriptional repressor/cystathionine beta‑lyase MalY |
| RA | 1,710,438 | G→A | 11.2% | K602K (AAG→AAA) | rsxC → | electron transport complex subunit RsxC |
| RA | 1,710,440 | T→G | 7.3% | L603R (CTG→CGG) | rsxC → | electron transport complex subunit RsxC |
| RA | 1,739,298 | A→G | 100% | intergenic (‑39/‑260) | ynhF ← / → purR | stress response protein YnhF/HTH‑type transcriptional repressor PurR |
| RA | 1,892,079 | T→A | 91.1% | A56A (GCA→GCT) | yeaY ← | Slp family lipoprotein YeaY |
| RA | 2,152,044 | A→C | 16.8% | V360G (GTG→GGG) | yegI ← | protein kinase YegI |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | Y75_RS11650–[rcsC] | Y75_RS11650, Y75_RS11650, [rcsC] | |
| RA | 2,362,339 | C→A | 10.2% | Q256K (CAA→AAA) | Y75_RS11795 → | ISNCY family transposase |
| RA | 2,366,007 | A→C | 14.1% | G26G (GGT→GGG) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,530,688 | C→A | 10.2% | T39N (ACC→AAC) | Y75_RS12650 → | outer membrane protein |
| RA | 2,792,331 | T→G | 8.6% | V314G (GTG→GGG) | Y75_RS13895 → | 4‑aminobutyrate‑‑2‑oxoglutarate transaminase |
| RA | 2,797,637 | C→A | 18.0% | intergenic (‑486/‑183) | stpA ← / → alaE | DNA‑binding protein StpA/L‑alanine exporter AlaE |
| RA | 2,824,894 | A→C | 14.5% | N136T (AAC→ACC) | srlA → | PTS glucitol/sorbitol transporter subunit IIC |
| RA | 2,866,109 | C→A | 100% | pseudogene (99/993 nt) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,877,643 | G→T | 13.1% | A262A (GCC→GCA) | cas1e ← | type I‑E CRISPR‑associated endonuclease Cas1 |
| RA | 2,906,975 | C→G | 100% | D450H (GAC→CAC) | pyrG ← | CTP synthase (glutamine hydrolyzing) |
| RA | 2,910,761 | A→G | 100% | L516P (CTG→CCG) | Y75_RS14515 ← | GTP pyrophosphokinase |
| RA | 2,973,749 | T→G | 18.5% | T308P (ACT→CCT) | aas ← | bifunctional acyl‑ACP‑‑phospholipid O‑acyltransferase/long‑chain‑fatty‑acid‑‑ACP ligase |
| RA | 3,063,461 | G→A | 11.4% | E2K (GAA→AAA) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,205,094 | G→A | 15.4% | intergenic (‑182/‑25) | ttdR ← / → ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,127 | C→G | 8.9% | S3R (AGC→AGG) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,132 | G→A | 11.6% | S5N (AGT→AAT) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,140 | C→A | 15.8% | Q8K (CAA→AAA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,143 | C→A | 22.4% | Q9K (CAG→AAG) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,221,478 | A→C | 10.6% | T64P (ACC→CCC) | ebgA → | beta‑galactosidase subunit alpha |
| RA | 3,448,513 | G→A | 91.0% | A940V (GCG→GTG) | rpoC ← | DNA‑directed RNA polymerase subunit beta' |
| RA | 3,493,183 | T→C | 12.2% | G323G (GGA→GGG) | Y75_RS17350 ← | PTS fructose transporter subunit EIIC |
| RA | 3,614,369 | A→C | 10.2% | V32G (GTA→GGA) | tatB ← | Sec‑independent protein translocase subunit TatB |
| RA | 3,645,110 | A→T | 100% | L140Q (CTG→CAG) | cyaA ← | class I adenylate cyclase |
| RA | 3,656,455 | C→T | 100% | V91I (GTT→ATT) | rffM ← | lipopolysaccharide N‑acetylmannosaminouronosyltransferase |
| RA | 3,661,298 | T→G | 10.4% | T80P (ACC→CCC) | rffA ← | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | 3,741,125 | A→G | 19.1% | M352V (ATG→GTG) | Y75_RS18545 → | adenine permease AdeP |
| RA | 3,741,129 | T→G | 17.7% | V353G (GTG→GGG) | Y75_RS18545 → | adenine permease AdeP |
| RA | 3,741,162 | A→T | 9.8% | Y364F (TAC→TTC) | Y75_RS18545 → | adenine permease AdeP |
| MC JC | 3,742,936 | Δ1,336 bp | 100% | Y75_RS18560–Y75_RS18560 | Y75_RS18560, Y75_RS18560 | |
| MC JC | 3,746,911 | Δ1,199 bp | 100% | Y75_RS18585–[tnaB] | Y75_RS18585, [tnaB] | |
| RA | 3,764,882 | A→C | 6.5% | H32Q (CAT→CAG) | Y75_RS18670 ← | hypothetical protein |
| RA | 3,764,886 | G→C | 8.7% | S31C (TCC→TGC) | Y75_RS18670 ← | hypothetical protein |
| RA | 3,764,893 | G→C | 8.0% | L29V (CTG→GTG) | Y75_RS18670 ← | hypothetical protein |
| RA | 3,775,819 | A→G | 6.2% | L233P (CTC→CCC) | Y75_RS18730 ← | GntR family transcriptional regulator |
| RA | 3,777,745 | A→T | 29.3% | I312F (ATT→TTT) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,777,753 | A→C | 21.8% | A314A (GCA→GCC) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,777,754 | A→C | 34.0% | T315P (ACC→CCC) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,777,758 | T→A | 10.0% | L316* (TTA→TAA) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,797,639 | C→G | 6.7% | G338G (GGC→GGG) | Y75_RS18845 → | adenine permease AdeQ |
| RA | 3,810,059 | A→T | 9.8% | intergenic (‑101/+20) | Y75_RS18905 ← / ← xanP | AsmA family protein/xanthine/proton symporter XanP |
| RA | 3,810,061 | C→T | 13.1% | intergenic (‑103/+18) | Y75_RS18905 ← / ← xanP | AsmA family protein/xanthine/proton symporter XanP |
| RA | 3,810,064 | A→T | 19.5% | intergenic (‑106/+15) | Y75_RS18905 ← / ← xanP | AsmA family protein/xanthine/proton symporter XanP |
| RA | 3,814,325 | A→C | 7.3% | V294G (GTG→GGG) | recG ← | ATP‑dependent DNA helicase RecG |
| RA | 3,819,310 | T→C | 9.7% | C22C (TGT→TGC) | ligB → | NAD‑dependent DNA ligase LigB |
| RA | 3,821,079 | C→A | 6.5% | A155S (GCC→TCC) | Y75_RS18950 ← | trimeric intracellular cation channel family protein |
| RA | 3,824,921 | A→C | 7.5% | D92A (GAC→GCC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,849,617 | C→G | 6.5% | A183G (GCG→GGG) | tdh → | L‑threonine 3‑dehydrogenase |
| RA | 3,857,203 | A→T | 6.3% | L150F (TTA→TTT) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,857,518 | C→A | 8.2% | D255E (GAC→GAA) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,858,449 | T→G | 15.6% | G199G (GGT→GGG) | cysE → | serine O‑acetyltransferase |
| RA | 3,858,461 | C→G | 9.2% | G203G (GGC→GGG) | cysE → | serine O‑acetyltransferase |
| RA | 3,878,107 | T→C | 15.6% | G42G (GGA→GGG) | Y75_RS19225 ← | RHS element protein RhsA |
| RA | 3,880,022 | T→G | 12.9% | V286G (GTC→GGC) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,880,031 | T→G | 20.9% | V289G (GTG→GGG) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,880,033 | A→G | 23.3% | S290G (AGT→GGT) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,880,074 | A→G | 16.5% | G303G (GGA→GGG) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,895,373 | T→G | 26.4% | D80A (GAC→GCC) | yiaN ← | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| RA | 3,908,677 | T→G | 16.4% | N203T (AAC→ACC) | Y75_RS19370 ← | D‑xylose ABC transporter substrate‑binding protein |
| RA | 3,908,712 | G→A | 7.2% | G191G (GGC→GGT) | Y75_RS19370 ← | D‑xylose ABC transporter substrate‑binding protein |
| RA | 4,096,128 | T→G | 15.7% | V186G (GTC→GGC) | bioH → | pimeloyl‑ACP methyl ester esterase BioH |
| RA | 4,200,347 | T→A | 100% | W321R (TGG→AGG) | rpoA → | DNA‑directed RNA polymerase subunit alpha |
| RA | 4,262,217 | A→C | 12.5% | T296P (ACC→CCC) | dinF → | MATE family efflux transporter DinF |
| RA | 4,348,548 | A→T | 10.9% | N164Y (AAT→TAT) | melB → | melibiose:sodium transporter MelB |
| RA | 4,371,271 | Δ2 bp | 100% | pseudogene (182‑183/1304 nt) | Y75_RS21600 ← | anaerobic C4‑dicarboxylate transporter |
| RA | 4,497,444 | A→T | 10.2% | T196T (ACT→ACA) | idnO ← | gluconate 5‑dehydrogenase |
| RA | 4,611,582 | A→G | 21.5% | S267P (TCC→CCC) | rsmC ← | 16S rRNA (guanine(1207)‑N(2))‑methyltransferase RsmC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 573976–575013 | 581786 | 6774–7811 | 50 [49] | [0] 135 | [Y75_RS02845]–[Y75_RS02900] | [Y75_RS02845],Y75_RS02850,essD,Y75_RS02860,rzoD,bor,Y75_RS02875,Y75_RS02880,Y75_RS02885,Y75_RS02890,Y75_RS02895,[Y75_RS02900] |
| * | * | ÷ | NC_007779 | 1301041–1302370 | 1302407 | 38–1367 | 132 [0] | [0] 99 | Y75_RS06530–Y75_RS06530 | Y75_RS06530,Y75_RS06530 |
| * | * | ÷ | NC_007779 | 1397877–1398957 | 1406267 | 7311–8391 | 51 [48] | [0] 113 | [Y75_RS07025]–[Y75_RS07065] | [Y75_RS07025],Y75_RS07030,uspE,Y75_RS07040,ogt,abgT,Y75_RS07060,[Y75_RS07065] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 273180 = | NA (NA) | 125 (0.840) | 77/402 | NT | 100% | intergenic (+3/+145) | Y75_RS01330/Y75_RS01335 | hypothetical protein/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 701988 = | 0 (0.000) | coding (29/1221 nt) | nagC | DNA‑binding transcriptional regulator NagC | |||||
| * | ? | NC_007779 | 567950 = | 55 (0.370) | 4 (0.030) | 4/380 | NT | 8.6% | coding (33/150 nt) | Y75_RS24780 | hypothetical protein |
| ? | NC_007779 | 568069 = | 33 (0.240) | intergenic (+2/‑56) | Y75_RS24780/Y75_RS02795 | hypothetical protein/recombinase family protein | |||||
| * | ? | NC_007779 | = 575008 | NA (NA) | 134 (0.900) | 83/404 | NT | 100% | coding (1041/1068 nt) | Y75_RS02850 | porin |
| ? | NC_007779 | 581787 = | 0 (0.000) | coding (215/627 nt) | Y75_RS02900 | class I SAM‑dependent methyltransferase | |||||
| * | ? | NC_007779 | = 689467 | NA (NA) | 137 (0.920) | 79/404 | NT | 100% | intergenic (‑32/+298) | Y75_RS03405/lnt | IS5‑like element IS5 family transposase/apolipoprotein N‑acyltransferase |
| ? | NC_007779 | = 701992 | 0 (0.000) | coding (25/1221 nt) | nagC | DNA‑binding transcriptional regulator NagC | |||||
| * | ? | NC_007779 | 1106360 = | NA (NA) | 16 (0.110) | 4/398 | NT | 55.5% | coding (187/914 nt) | Y75_RS05455 | IS3‑like element IS2 family transposase |
| ? | NC_007779 | 1106752 = | 13 (0.090) | coding (155/361 nt) | Y75_RS05455 | IS3‑like element IS2 family transposase | |||||
| * | ? | NC_007779 | 1209367 = | 70 (0.470) | 78 (0.570) | 54/372 | NT | 58.8% | coding (290/630 nt) | Y75_RS06020 | hypothetical protein |
| ? | NC_007779 | 1211196 = | 45 (0.330) | intergenic (‑6/‑66) | Y75_RS06035/pinE | tail fiber protein/site‑specific DNA recombinase | |||||
| * | ? | NC_007779 | = 1209382 | 71 (0.480) | 71 (0.520) | 50/372 | NT | 56.3% | coding (305/630 nt) | Y75_RS06020 | hypothetical protein |
| ? | NC_007779 | = 1211179 | 45 (0.330) | coding (12/495 nt) | Y75_RS06035 | tail fiber protein | |||||
| * | ? | NC_007779 | 1294844 = | 0 (0.000) | 152 (1.020) | 85/402 | NT | 100% | intergenic (‑345/‑260) | hns/tdk | DNA‑binding transcriptional regulator H‑NS/thymidine kinase |
| ? | NC_007779 | = 1398951 | NA (NA) | intergenic (+145/‑128) | Y75_RS07025/Y75_RS07030 | IS5‑like element IS5 family transposase/DUF2534 family protein | |||||
| * | ? | NC_007779 | = 1294848 | 0 (0.000) | 163 (1.090) | 91/404 | NT | 100% | intergenic (‑349/‑256) | hns/tdk | DNA‑binding transcriptional regulator H‑NS/thymidine kinase |
| ? | NC_007779 | 1397758 = | NA (NA) | intergenic (‑122/‑32) | ynaI/Y75_RS07025 | low conductance mechanosensitive channel YnaI/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 1301040 | 0 (0.000) | 92 (0.720) +28 bp |
66/348 | NT | 100% | intergenic (+218/‑45) | ychE/Y75_RS06530 | NAAT family transporter YchE/IS3‑like element IS2 family transposase |
| ? | NC_007779 | = 4311564 | NA (NA) | pseudogene (914/921 nt) | alsK | allose kinase | |||||
| * | ? | NC_007779 | 1302408 = | 0 (0.000) | 93 (0.620) | 59/404 | NT | 100% | intergenic (+50/‑488) | Y75_RS06530/oppA | IS3‑like element IS2 family transposase/oligopeptide ABC transporter substrate‑binding protein OppA |
| ? | NC_007779 | 1397758 = | NA (NA) | intergenic (‑122/‑32) | ynaI/Y75_RS07025 | low conductance mechanosensitive channel YnaI/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | 1406268 = | 0 (0.000) | 111 (0.740) | 72/404 | NT | 100% | coding (12/1311 nt) | Y75_RS07065 | p‑aminobenzoyl‑glutamate hydrolase subunit AbgA |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑298/+146) | flhD/Y75_RS09980 | flagellar transcriptional regulator FlhD/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | 1885208 = | 0 (0.000) | 124 (0.830) | 75/404 | NT | 100% | coding (307/1446 nt) | Y75_RS09485 | BCCT family transporter |
| ? | NC_007779 | 2411458 = | NA (NA) | intergenic (‑147/+15) | lrhA/Y75_RS12035 | transcriptional regulator LrhA/IS1‑like element IS1A family transposase | |||||
| * | ? | NC_007779 | = 1885215 | 3 (0.020) | 139 (0.930) | 87/404 | NT | 97.9% | coding (314/1446 nt) | Y75_RS09485 | BCCT family transporter |
| ? | NC_007779 | = 2412225 | NA (NA) | intergenic (‑55/‑782) | Y75_RS12035/Y75_RS12040 | IS1‑like element IS1A family transposase/alanine transaminase AlaA | |||||
| * | ? | NC_007779 | = 2176982 | 0 (0.000) | 165 (1.130) | 88/394 | NT | 100% | intergenic (‑2/‑33) | gatA/Y75_RS10980 | PTS galactitol transporter subunit IIA/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 2178182 = | 0 (0.000) | pseudogene (202/207 nt) | gatA | PTS galactitol transporter subunit IIA | |||||
| * | ? | NC_007779 | 2380495 = | 16 (0.110) | 89 (0.600) | 55/400 | NT | 84.9% | coding (138/963 nt) | menC | o‑succinylbenzoate synthase |
| ? | NC_007779 | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/Y75_RS12570 | nucleoside permease NupC/IS4‑like element IS421 family transposase | |||||
| * | ? | NC_007779 | = 2380506 | 12 (0.080) | 149 (1.010) | 83/398 | NT | 92.6% | coding (127/963 nt) | menC | o‑succinylbenzoate synthase |
| ? | NC_007779 | = 2521059 | NA (NA) | intergenic (+170/+30) | Y75_RS12570/Y75_RS12575 | IS4‑like element IS421 family transposase/sensor domain‑containing phosphodiesterase | |||||
| * | ? | NC_007779 | = 3261133 | 0 (0.000) | 158 (1.080) | 73/396 | NT | 100% | intergenic (‑59/‑33) | tdcE/Y75_RS16205 | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 3262333 = | 0 (0.000) | pseudogene (1183/1185 nt) | tdcD | propionate kinase | |||||
| * | ? | NC_007779 | 3748316 = | 0 (0.000) | 346 (2.320) | 144/404 | NT | 100% | pseudogene (665/873 nt) | tnaB | low affinity tryptophan permease TnaB |
| ? | NC_007779 | = 4056987 | NA (NA) | coding (391/417 nt) | Y75_RS20060 | hypothetical protein | |||||
| * | ? | NC_007779 | = 3748324 | 15 (0.100) | 127 (0.850) | 67/404 | NT | 89.4% | pseudogene (657/873 nt) | tnaB | low affinity tryptophan permease TnaB |
| ? | NC_007779 | 4056220 = | NA (NA) | intergenic (‑209/+15) | Y75_RS25055/Y75_RS20055 | hypothetical protein/IS1‑like element IS1A family transposase | |||||
| * | ? | NC_007779 | = 3750590 | 0 (0.000) | 443 (3.030) | 132/396 | NT | 100% | intergenic (‑104/‑33) | tnaA/Y75_RS18600 | tryptophanase/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 3751790 = | 0 (0.000) | intergenic (+151/+116) | Y75_RS18600/tnaC | IS5‑like element IS5 family transposase/tryptophanase leader peptide | |||||
| * | ? | NC_007779 | = 3949333 | 155 (1.040) | 168 (1.130) | 88/404 | NT | 52.0% | coding (1526/2340 nt) | bcsB | cellulose biosynthesis cyclic di‑GMP‑binding regulatory protein BcsB |
| ? | NC_007779 | 4056220 = | NA (NA) | intergenic (‑209/+15) | Y75_RS25055/Y75_RS20055 | hypothetical protein/IS1‑like element IS1A family transposase | |||||
| * | ? | NC_007779 | 4056221 = | NA (NA) | 132 (0.890) | 84/402 | NT | 96.4% | intergenic (‑210/+14) | Y75_RS25055/Y75_RS20055 | hypothetical protein/IS1‑like element IS1A family transposase |
| ? | NC_007779 | 4370787 = | 5 (0.030) | pseudogene (667/1304 nt) | Y75_RS21600 | anaerobic C4‑dicarboxylate transporter | |||||
| * | ? | NC_007779 | = 4056987 | NA (NA) | 176 (1.180) | 100/404 | NT | 98.9% | coding (391/417 nt) | Y75_RS20060 | hypothetical protein |
| ? | NC_007779 | = 4370795 | 2 (0.010) | pseudogene (659/1304 nt) | Y75_RS21600 | anaerobic C4‑dicarboxylate transporter | |||||
| * | ? | NC_007779 | = 4310362 | 0 (0.000) | 146 (1.000) | 64/396 | NT | 100% | intergenic (‑286/‑33) | yjcS/Y75_RS21310 | alkyl sulfatase YjcS/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 4311562 = | 0 (0.000) | pseudogene (916/921 nt) | alsK | allose kinase | |||||