mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 321,709 | T→A | 5.2% | D162E (GAT→GAA) | SAS0274 → | conserved hypothetical protein |
| RA | BX571857 | 605,157 | T→C | 6.6% | D1007D (GAT→GAC) | SAS0521 → | bone sialoprotein‑binding protein |
| RA | BX571857 | 1,035,394 | A→T | 8.1% | intergenic (+392/‑249) | SAS0963 → / → SAS0964 | hypothetical protein/putative exported protein |
| RA | BX571857 | 1,136,694 | C→T | 10.2% | A40T (GCA→ACA) | SAS1063 ← | iron‑regulated heme‑iron binding protein |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 1,914,095 | G→A | 100% | V11I (GTA→ATA) | SAS1762 → | putative peptidyl‑prolyl cis‑isomerase |
| JC | BX571857 | 2,220,583 | 30 bp→30 bp | 12.0% | pseudogene (4082‑4111/5385 nt) | fmtB ← | putative surface anchored protein (pseudogene) |
| RA | BX571857 | 2,667,682 | G→C | 9.5% | intergenic (‑13/‑239) | SAS2489 ← / → SAS2490 | putative aminotransferase/putative membrane protein |
| RA | BX571857 | 2,700,209 | A→G | 5.6% | D753D (GAT→GAC) | SAS2516 ← | fibrinogen and keratin‑10 binding surface anchored protein |
| RA | BX571857 | 2,778,123 | C→T | 7.0% | A1049T (GCA→ACA) | SAS2578 ← | collagen adhesin precursor |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 160 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 533581 | 146 (0.920) | 8 (0.070) | 7/134 | NT | 6.5% | noncoding (25/76 nt) | tRNA Val anticodon TAC_ Cove score 95.74 | tRNA‑Val |
| ? | BX571857 | 534232 = | 118 (0.960) | noncoding (26/76 nt) | tRNA Ala anticodon TGC_ Cove score 89.05 | tRNA‑Ala | |||||
| * | ? | BX571857 | 980997 = | NA (NA) | 12 (0.110) | 12/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 142 (1.160) | 82/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||