mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 135,427 | C→T | 70.2% | R134* (CGA→TGA) | SAS0118 → | putative exported protein |
| RA | BX571857 | 378,366 | T→G | 6.3% | I288S (ATT→AGT) | SAS0330 → | acetyl‑CoA acetyltransferase |
| RA | BX571857 | 549,806 | A→G | 70.5% | intergenic (‑141/‑17) | SAS0478 ← / → SAS0479 | nucleoside permease/putative DNA‑binding protein |
| RA | BX571857 | 621,623 | G→A | 69.4% | A42A (GCG→GCA) | SAS0539 → | putative uracil‑DNA glycosylase |
| RA | BX571857 | 627,445 | A→T | 13.6% | intergenic (‑133/‑35) | SAS0546 ← / → SAS0547 | conserved hypothetical protein/putative phosphate acetyltransferase |
| JC | BX571857 | 1,034,532 | Δ4 bp | 17.1% | coding (451‑454/603 nt) | SAS0962 → | putative membrane protein |
| RA | BX571857 | 1,059,249 | A→T | 6.2% | S429T (TCG→ACG) | SAS0988 ← | bifunctional autolysin precursor |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| RA | BX571857 | 1,380,051 | A→C | 14.6% | D73A (GAT→GCT) | SAS1289 → | aconitate hydratase |
| RA | BX571857 | 1,434,357 | C→G | 12.0% | A141G (GCT→GGT) | SAS1338 → | putative tetrahydrodipicolinate acetyltransferase |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 2,379,210 | G→T | 9.5% | A51E (GCA→GAA) | SAS2224 ← | urocanate hydratase |
| RA | BX571857 | 2,602,946 | G→T | 77.3% | G116G (GGC→GGA) | SAS2426 ← | putative membrane protein |
| RA | BX571857 | 2,700,137 | A→G | 5.1% | D777D (GAT→GAC) | SAS2516 ← | fibrinogen and keratin‑10 binding surface anchored protein |
| RA | BX571857 | 2,700,425 | A→G | 7.7% | D681D (GAT→GAC) | SAS2516 ← | fibrinogen and keratin‑10 binding surface anchored protein |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 442 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 980997 = | NA (NA) | 17 (0.120) | 16/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 384 (1.110) | 130/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||