Mon Apr  6 22:40:28 2020

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq -p -j 1 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/3 -r /var/data/GCA_000011525.1_ASM1152v1_genomic.gb /var/alemutpipe-outputs/good/ERR1440900_R1.good.fq /var/alemutpipe-outputs/good/ERR1440900_R2.good.fq