mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 431,505 | T→C | 9.2% | S77P (TCA→CCA) | SAS0387 → | exotoxin |
| RA | BX571857 | 605,157 | T→C | 6.0% | D1007D (GAT→GAC) | SAS0521 → | bone sialoprotein‑binding protein |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| RA | BX571857 | 1,477,356 | G→A | 6.8% | pseudogene (19605/21246 nt) | ebh ← | very large surface anchored protein (pseudogene) |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 1,937,435 | A→G | 9.2% | noncoding (62/90 nt) | tRNA Ser anticodon TGA_ Cove score 61.04 ← | tRNA‑Ser |
| RA | BX571857 | 2,004,992 | G→A | 33.3% | intergenic (‑155/+50) | SAS1840 ← / ← SAS1841 | putative sodium:sulfate symporter/hypothetical protein |
| RA | BX571857 | 2,412,116 | C→A | 36.7% | V133L (GTG→TTG) | SAS2256 ← | putative malate:quinone oxidoreductase 1 |
| RA | BX571857 | 2,553,454 | C→A | 28.4% | P7P (CCG→CCT) | SAS2383 ← | putative cell wall‑anchored protein |
| RA | BX571857 | 2,641,524 | A→G | 8.0% | D114D (GAT→GAC) | SAS2461 ← | putative glyoxalase |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 447 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 980997 = | NA (NA) | 19 (0.130) | 16/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 397 (1.150) | 136/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||