breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation freq annotation gene description
RA BX571857 423,924 G→A 10.3% intergenic (‑183/‑171) SAS0378 ← / → SAS0379 hypothetical protein/conserved hypothetical protein
RA BX571857 425,660 T→C 12.9% S144P (TCA→CCA)  SAS0381 → conserved hypothetical protein
RA BX571857 1,167,168 A→G 9.4% D28G (GAT→GGT)  SAS1093 → hypothetical protein
RA BX571857 1,252,438 T→C 100% intergenic (+358/‑77) SAS1171 → / → SAS1172 signal recognition particle protein/30S ribosomal protein S16
RA BX571857 1,280,122 C→G 29.9% P298A (CCA→GCA)  SAS1196 → putative membrane protein
RA BX571857 1,868,342 G→A 100% G129D (GGT→GAT)  SAS1720 → putative membrane protein
RA BX571857 1,937,435 A→G 7.6% noncoding (62/90 nt) tRNA Ser anticodon TGA_ Cove score 61.04 ← tRNA‑Ser
RA BX571857 1,937,436 G→C 6.6% noncoding (61/90 nt) tRNA Ser anticodon TGA_ Cove score 61.04 ← tRNA‑Ser
RA BX571857 1,945,482 C→G 47.0% K154N (AAG→AAC SAS1784 ← conserved hypothetical protein
RA BX571857 2,597,224 C→T 16.4% intergenic (‑67/+66) SAS2421 ← / ← SAS2422 putative exported protein/conserved hypothetical protein
RA BX571858 20,628:1 +G 100% coding (288/306 nt) pSAS24 → putative exported protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ BX571858 20652 20652 1 220 [0] [0] NA pSAS24/– putative exported protein/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BX571857 980997 =NA (NA)21 (0.330) 18/118 NT NA noncoding (1/27 nt) Repeat flanking prophage phiSa4(476) Repeat flanking prophage phiSa4(476)
?BX571857 = 1025750 NA (NA)intergenic (+519/‑57) SAS0954/SAS0955 amidase/putative protease
* ? BX571858 1 =0 (0.000)192 (1.210) 102/170 NT 100% intergenic (–/‑11) –/pSAS01 –/putative ABC transporter ATP binding protein
?BX571858 = 20651 0 (0.000)intergenic (+5/–) pSAS24/– putative exported protein/–