Predicted mutation
evidence seq id position mutation freq annotation gene description
RA BX571857 1,252,438 T→C 100% intergenic (+358/‑77) SAS1171 → / → SAS1172 signal recognition particle protein/30S ribosomal protein S16

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*BX5718571,252,4380TC100.0% 298.1 / NA 68intergenic (+358/‑77)SAS1171/SAS1172signal recognition particle protein/30S ribosomal protein S16
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (39/29);  total (39/29)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TATAACCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTATAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTAAAATTC  >  BX571857/1252346‑1252530
                                                                                            |                                                                                            
tataACCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAAc                                                                                          <  1:1009900/97‑1 (MQ=255)
 ataACCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACa                                                                                         <  1:257735/97‑1 (MQ=255)
  taACCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACAt                                                                                        <  2:293862/97‑1 (MQ=255)
      cTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTcac                                                                                    >  1:108027/1‑97 (MQ=255)
        aTTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTcacac                                                                                  >  1:1358282/1‑97 (MQ=255)
           aaCAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACAcc                                                                               <  1:289235/97‑1 (MQ=255)
              aGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGt                                                                            >  2:1293714/1‑97 (MQ=255)
              aGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGt                                                                            >  2:862055/1‑97 (MQ=255)
               gTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGtt                                                                           <  2:29030/97‑1 (MQ=255)
                 cTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTaa                                                                         <  1:1240737/97‑1 (MQ=255)
                 cTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTaa                                                                         >  1:326296/1‑97 (MQ=255)
                 cTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTaa                                                                         >  2:857657/1‑97 (MQ=255)
                 cTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTaa                                                                         >  2:905404/1‑97 (MQ=255)
                   aaTTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTAAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAata                                                                       <  2:957943/97‑1 (MQ=255)
                    aTTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAatat                                                                      <  2:617550/97‑1 (MQ=255)
                    aTTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAatat                                                                      <  2:617729/97‑1 (MQ=255)
                      ttAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAAtatta                                                                    <  1:1456755/97‑1 (MQ=255)
                      ttAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAAtatta                                                                    >  2:562118/1‑97 (MQ=255)
                        aGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATattatt                                                                  <  1:814350/97‑1 (MQ=255)
                         gTAATCACATAGTTAGTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTAttt                                                                 <  2:43927/97‑1 (MQ=255)
                            aTCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCtt                                                              >  1:230312/1‑97 (MQ=255)
                            aTCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCtt                                                              >  1:230466/1‑97 (MQ=255)
                            aTCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCtt                                                              >  2:995965/1‑97 (MQ=255)
                             tCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTg                                                             >  2:405093/1‑97 (MQ=255)
                              cacaTAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGt                                                            >  2:1486192/1‑97 (MQ=255)
                                 aTAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGa                                                         <  1:753293/97‑1 (MQ=255)
                                 aTAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGa                                                         >  1:710424/1‑97 (MQ=255)
                                  tAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGaa                                                        >  2:283604/1‑97 (MQ=255)
                                   aGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGaaa                                                       <  1:995589/97‑1 (MQ=255)
                                    gTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGaaaa                                                      >  1:1492347/1‑97 (MQ=255)
                                     ttattaTTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAAt                                                     <  1:716407/97‑1 (MQ=255)
                                      tattatTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATa                                                    >  1:726926/1‑97 (MQ=255)
                                       attattGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATaa                                                   >  1:1570359/1‑97 (MQ=255)
                                        ttattGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATaaa                                                  <  1:1529941/97‑1 (MQ=255)
                                          attGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATaaaaa                                                >  2:470198/1‑97 (MQ=255)
                                             gTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTa                                             >  1:986415/1‑97 (MQ=255)
                                                 gAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAAc                                         <  2:1360238/97‑1 (MQ=255)
                                                 gAAAAAGGTTCAAGAATTTTCCGGGTAAAGAAAAAACTCTGTACAAACATGCACACGCCTGTTAATATGATTTCTTGTAGAAAATAAAAAGTaaagc                                         <  2:548940/97‑3 (MQ=255)
                                                  aaaaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACa                                        >  1:1079139/1‑97 (MQ=255)
                                                  aaaaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACa                                        >  1:372119/1‑97 (MQ=255)
                                                   aaaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACAt                                       <  2:777496/97‑1 (MQ=255)
                                                    aaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATg                                      >  2:944156/1‑97 (MQ=255)
                                                    aaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATg                                      >  2:475951/1‑97 (MQ=255)
                                                      aGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGAc                                    <  1:1492847/97‑1 (MQ=255)
                                                         ttCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTa                                 >  1:1358516/1‑97 (MQ=255)
                                                              taatTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGga                            <  1:1079879/97‑1 (MQ=255)
                                                               aatTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGgag                           >  1:1325959/1‑97 (MQ=255)
                                                                atTTTCATCGTAAAGAAAAAACTCTTTACAAACATTCCCACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGgaga                          <  2:1435221/97‑1 (MQ=255)
                                                                  tttCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAtt                        >  1:542718/1‑97 (MQ=255)
                                                                  tttCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAtt                        >  1:542771/1‑97 (MQ=255)
                                                                  tttCCTGGTAAAGAAAAAACTCTCTACAAACATTCACACCCCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAtt                        >  2:636291/1‑97 (MQ=255)
                                                                   ttCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAttt                       >  1:110143/1‑97 (MQ=255)
                                                                    tCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAtttt                      <  1:222695/97‑1 (MQ=255)
                                                                    tCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAtttt                      <  2:907768/97‑1 (MQ=255)
                                                                       tGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTtata                   <  1:905404/97‑1 (MQ=255)
                                                                          tAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAAt                >  1:1098278/1‑97 (MQ=255)
                                                                             aGAACAAACTCTTTACAAACATTCACTCACAGGTTAATATTATTGCTTGTAGGAAATAAAAATTAAAACATGACTTGGAGGAGATTTTATAAATGGc             <  2:512864/97‑1 (MQ=255)
                                                                              gAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCa            >  1:1149403/1‑97 (MQ=255)
                                                                              gAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCa            >  1:1149629/1‑97 (MQ=255)
                                                                               aaaaaaCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAg           >  2:253780/1‑97 (MQ=255)
                                                                                    aCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaa      >  1:1295315/1‑97 (MQ=255)
                                                                                    aCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaa      >  2:179391/1‑97 (MQ=255)
                                                                                    aCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaa      <  2:424163/97‑1 (MQ=255)
                                                                                    aCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaa      <  2:463442/97‑1 (MQ=255)
                                                                                     ctctTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaaa     >  2:527794/1‑97 (MQ=255)
                                                                                     ctctTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaaa     >  1:975491/1‑97 (MQ=255)
                                                                                     ctctTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaaa     >  1:975708/1‑97 (MQ=255)
                                                                                        tttACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTAAAATTc  <  1:167532/97‑1 (MQ=255)
                                                                                            |                                                                                            
TATAACCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTATAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTAAAATTC  >  BX571857/1252346‑1252530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: