Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | BX571857 | 1,252,438 | 0 | T | C | 100.0% | 298.1 / NA | 68 | intergenic (+358/‑77) | SAS1171/SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (39/29); total (39/29) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TATAACCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTATAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTAAAATTC > BX571857/1252346‑1252530 | tataACCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAAc < 1:1009900/97‑1 (MQ=255) ataACCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACa < 1:257735/97‑1 (MQ=255) taACCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACAt < 2:293862/97‑1 (MQ=255) cTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTcac > 1:108027/1‑97 (MQ=255) aTTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTcacac > 1:1358282/1‑97 (MQ=255) aaCAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACAcc < 1:289235/97‑1 (MQ=255) aGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGt > 2:1293714/1‑97 (MQ=255) aGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGt > 2:862055/1‑97 (MQ=255) gTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGtt < 2:29030/97‑1 (MQ=255) cTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTaa < 1:1240737/97‑1 (MQ=255) cTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTaa > 1:326296/1‑97 (MQ=255) cTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTaa > 2:857657/1‑97 (MQ=255) cTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTaa > 2:905404/1‑97 (MQ=255) aaTTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTAAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAata < 2:957943/97‑1 (MQ=255) aTTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAatat < 2:617550/97‑1 (MQ=255) aTTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAatat < 2:617729/97‑1 (MQ=255) ttAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAAtatta < 1:1456755/97‑1 (MQ=255) ttAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAAtatta > 2:562118/1‑97 (MQ=255) aGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATattatt < 1:814350/97‑1 (MQ=255) gTAATCACATAGTTAGTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTAttt < 2:43927/97‑1 (MQ=255) aTCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCtt > 1:230312/1‑97 (MQ=255) aTCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCtt > 1:230466/1‑97 (MQ=255) aTCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCtt > 2:995965/1‑97 (MQ=255) tCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTg > 2:405093/1‑97 (MQ=255) cacaTAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGt > 2:1486192/1‑97 (MQ=255) aTAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGa < 1:753293/97‑1 (MQ=255) aTAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGa > 1:710424/1‑97 (MQ=255) tAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGaa > 2:283604/1‑97 (MQ=255) aGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGaaa < 1:995589/97‑1 (MQ=255) gTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGaaaa > 1:1492347/1‑97 (MQ=255) ttattaTTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAAt < 1:716407/97‑1 (MQ=255) tattatTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATa > 1:726926/1‑97 (MQ=255) attattGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATaa > 1:1570359/1‑97 (MQ=255) ttattGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATaaa < 1:1529941/97‑1 (MQ=255) attGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATaaaaa > 2:470198/1‑97 (MQ=255) gTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTa > 1:986415/1‑97 (MQ=255) gAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAAc < 2:1360238/97‑1 (MQ=255) gAAAAAGGTTCAAGAATTTTCCGGGTAAAGAAAAAACTCTGTACAAACATGCACACGCCTGTTAATATGATTTCTTGTAGAAAATAAAAAGTaaagc < 2:548940/97‑3 (MQ=255) aaaaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACa > 1:1079139/1‑97 (MQ=255) aaaaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACa > 1:372119/1‑97 (MQ=255) aaaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACAt < 2:777496/97‑1 (MQ=255) aaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATg > 2:944156/1‑97 (MQ=255) aaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATg > 2:475951/1‑97 (MQ=255) aGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGAc < 1:1492847/97‑1 (MQ=255) ttCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTa > 1:1358516/1‑97 (MQ=255) taatTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGga < 1:1079879/97‑1 (MQ=255) aatTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGgag > 1:1325959/1‑97 (MQ=255) atTTTCATCGTAAAGAAAAAACTCTTTACAAACATTCCCACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGgaga < 2:1435221/97‑1 (MQ=255) tttCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAtt > 1:542718/1‑97 (MQ=255) tttCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAtt > 1:542771/1‑97 (MQ=255) tttCCTGGTAAAGAAAAAACTCTCTACAAACATTCACACCCCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAtt > 2:636291/1‑97 (MQ=255) ttCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAttt > 1:110143/1‑97 (MQ=255) tCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAtttt < 1:222695/97‑1 (MQ=255) tCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGAtttt < 2:907768/97‑1 (MQ=255) tGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTtata < 1:905404/97‑1 (MQ=255) tAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAAt > 1:1098278/1‑97 (MQ=255) aGAACAAACTCTTTACAAACATTCACTCACAGGTTAATATTATTGCTTGTAGGAAATAAAAATTAAAACATGACTTGGAGGAGATTTTATAAATGGc < 2:512864/97‑1 (MQ=255) gAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCa > 1:1149403/1‑97 (MQ=255) gAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCa > 1:1149629/1‑97 (MQ=255) aaaaaaCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAg > 2:253780/1‑97 (MQ=255) aCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaa > 1:1295315/1‑97 (MQ=255) aCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaa > 2:179391/1‑97 (MQ=255) aCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaa < 2:424163/97‑1 (MQ=255) aCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaa < 2:463442/97‑1 (MQ=255) ctctTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaaa > 2:527794/1‑97 (MQ=255) ctctTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaaa > 1:975491/1‑97 (MQ=255) ctctTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTaaaa > 1:975708/1‑97 (MQ=255) tttACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTAAAATTc < 1:167532/97‑1 (MQ=255) | TATAACCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTATAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTAAAATTC > BX571857/1252346‑1252530 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |