Predicted mutation
evidence seq id position mutation freq annotation gene description
RA BX571857 1,945,482 C→G 62.7% K154N (AAG→AAC SAS1784 ← conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*BX5718571,945,4820CG62.7% 224.4 / 254.4 166K154N (AAG→AACSAS1784conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (35/27);  new base G (54/50);  total (89/77)
Fisher's exact test for biased strand distribution p-value = 6.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 168 total aligned reads displayed.

TTTCAAGTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCATATATATGTTGTC  >  BX571857/1945385‑1945579
                                                                                                 |                                                                                                 
tttCAAGTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAc                                                                                                   <  1:313124/98‑1 (MQ=255)
 ttCAAGTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACt                                                                                                  <  2:1339607/98‑1 (MQ=255)
  tCAAGTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACtt                                                                                                 <  1:890079/98‑1 (MQ=255)
   cAAGTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTc                                                                                                >  2:2516617/1‑98 (MQ=255)
   cAAGTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTc                                                                                                >  2:207218/1‑98 (MQ=255)
    aaGTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCg                                                                                               >  2:1907744/1‑98 (MQ=255)
     aGTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGc                                                                                              <  2:615913/98‑1 (MQ=255)
      gTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCa                                                                                             >  2:2082320/1‑98 (MQ=255)
      gTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCa                                                                                             <  2:2381472/98‑1 (MQ=255)
      gTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCa                                                                                             >  2:1580981/1‑98 (MQ=255)
       tGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAg                                                                                            >  1:2893667/1‑98 (MQ=255)
       tGATTCGATAGCATATATCTCGTCAAACTCATCTTTGTTCTGATCTGACTTGCTCAGACCCATTAAATTCACATTAAAAGCCTTTGCTAACTTCGCAg                                                                                            >  2:1605574/1‑98 (MQ=255)
        gATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGt                                                                                           <  1:2709295/98‑1 (MQ=255)
          ttCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTc                                                                                         >  1:3162627/1‑98 (MQ=255)
          ttCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTc                                                                                         >  2:1201470/1‑98 (MQ=255)
          ttCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTc                                                                                         >  1:2185629/1‑98 (MQ=255)
           tCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCt                                                                                        >  2:132847/1‑98 (MQ=255)
               tAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCtagta                                                                                    >  2:630686/1‑98 (MQ=255)
                aGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCtagtag                                                                                   >  1:614263/1‑98 (MQ=255)
                aGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCtagtag                                                                                   >  1:1870393/1‑98 (MQ=255)
                 gTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGc                                                                                  >  1:319959/1‑98 (MQ=255)
                  tatataTCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCa                                                                                 <  1:1744660/98‑1 (MQ=255)
                   atatatCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCaa                                                                                <  1:2372799/98‑1 (MQ=255)
                   atatatCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCaa                                                                                <  1:2538318/98‑1 (MQ=255)
                   atatatCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCaa                                                                                <  1:2310728/98‑1 (MQ=255)
                   atatatCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCaa                                                                                <  1:2517300/98‑1 (MQ=255)
                    tatatCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAAt                                                                               >  1:1530150/1‑98 (MQ=255)
                      tatCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTg                                                                             >  1:377800/1‑98 (MQ=255)
                       atCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGc                                                                            >  2:369654/1‑98 (MQ=255)
                       atCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGc                                                                            >  2:2138059/1‑98 (MQ=255)
                        tctcGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCa                                                                           >  1:916939/1‑98 (MQ=255)
                         ctcGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCAc                                                                          >  1:1006835/1‑98 (MQ=255)
                         ctcGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCAc                                                                          >  1:3268919/1‑98 (MQ=255)
                         ctcGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCAc                                                                          >  2:857354/1‑98 (MQ=255)
                         ctcGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCAc                                                                          <  2:3142996/98‑1 (MQ=255)
                           cGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCt                                                                        <  1:684959/98‑1 (MQ=255)
                             tCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGt                                                                      <  2:196718/98‑1 (MQ=255)
                              cAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTa                                                                     >  2:2555201/1‑98 (MQ=255)
                              cAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTa                                                                     >  2:807308/1‑98 (MQ=255)
                              cAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTa                                                                     <  2:2672392/98‑1 (MQ=255)
                                aaCTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTAcc                                                                   >  1:1824353/1‑98 (MQ=255)
                                  cTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTa                                                                 >  2:2289301/1‑98 (MQ=255)
                                    cATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTaaa                                                               >  2:2910772/1‑98 (MQ=255)
                                    cATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTaaa                                                               >  1:1371276/1‑98 (MQ=255)
                                       cTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAAt                                                            >  2:875872/1‑98 (MQ=255)
                                          tGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATaaa                                                         <  1:1042434/98‑1 (MQ=255)
                                          tGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATaaa                                                         <  2:1671542/98‑1 (MQ=255)
                                             tCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACt                                                      >  1:3057351/1‑98 (MQ=255)
                                             tCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACt                                                      <  1:2834531/98‑1 (MQ=255)
                                                  cctgacTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTg                                                 <  1:1469401/98‑1 (MQ=255)
                                                   ctggcTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGt                                                <  1:687540/98‑1 (MQ=255)
                                                     gacTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTcc                                              <  1:1399607/98‑1 (MQ=255)
                                                       cTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTg                                            <  1:3090552/98‑1 (MQ=255)
                                                           cTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAg                                        >  1:1742471/1‑98 (MQ=255)
                                                            tCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAgg                                       <  1:2963224/98‑1 (MQ=255)
                                                             cAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGc                                      >  2:2946401/1‑98 (MQ=255)
                                                               gACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGt                                    >  1:1021374/1‑98 (MQ=255)
                                                               gACCAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGt                                    <  1:106451/98‑1 (MQ=255)
                                                                aCCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGtt                                   >  1:2148301/1‑98 (MQ=255)
                                                                 ccAATTAAATTCATATTAAAAGCCTTTGCTGACTTCGCAGGTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGttt                                  <  2:301465/98‑1 (MQ=255)
                                                                 ccAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGttt                                  >  2:660376/1‑98 (MQ=255)
                                                                 ccAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGttt                                  >  1:2014691/1‑98 (MQ=255)
                                                                  cAATTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTa                                 <  1:976601/98‑1 (MQ=255)
                                                                  cAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTa                                 >  2:451091/1‑98 (MQ=255)
                                                                   aaTTAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTAc                                <  1:822239/98‑1 (MQ=255)
                                                                    aTTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTAcc                               >  1:2762708/1‑98 (MQ=255)
                                                                    aTTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTAcc                               >  1:2817909/1‑98 (MQ=255)
                                                                     ttAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCa                              <  2:1814573/98‑1 (MQ=255)
                                                                     ttAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCa                              <  1:3256747/98‑1 (MQ=255)
                                                                     ttAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCATTTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCa                              >  2:2319381/1‑98 (MQ=255)
                                                                      tAAATTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAg                             <  2:3119049/98‑1 (MQ=255)
                                                                       aaaTTCACATGAAAAGCCTTTGCTAAGATCGCAGTTCTAATAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGt                            <  2:898897/98‑1 (MQ=255)
                                                                        aaTTCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGtt                           <  2:1516859/98‑1 (MQ=255)
                                                                          ttCATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTAt                         >  2:2765997/1‑98 (MQ=255)
                                                                          ttCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTAt                         >  2:2602051/1‑98 (MQ=255)
                                                                          ttCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTAt                         <  1:2914114/98‑1 (MQ=255)
                                                                            cATATTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTAttt                       <  2:514146/98‑1 (MQ=255)
                                                                             atatTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTAtttt                      <  1:1647274/98‑1 (MQ=255)
                                                                             atatTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTAtttt                      <  1:1560240/98‑1 (MQ=255)
                                                                               atTAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCg                    >  2:2788849/1‑98 (MQ=255)
                                                                               atTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCg                    >  2:1830680/1‑98 (MQ=255)
                                                                                ttAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGa                   <  2:1789982/98‑1 (MQ=255)
                                                                                ttAAAAGCCTGTGCTAACTTCGCAGTTCTAGTAGCAATTGCAGCTGTACCTAAATATAAATCTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGa                   <  2:1906521/98‑1 (MQ=255)
                                                                                 tAAAAGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGaa                  <  1:1339937/98‑1 (MQ=255)
                                                                                 tAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGaa                  <  1:749112/98‑1 (MQ=255)
                                                                                   aaaGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATc                <  1:2140968/98‑1 (MQ=255)
                                                                                   aaaGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATc                >  1:3293337/1‑98 (MQ=255)
                                                                                    aaGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCa               >  1:2067785/1‑98 (MQ=255)
                                                                                    aaGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCa               <  2:847830/98‑1 (MQ=255)
                                                                                     aGCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCat              <  1:2239487/98‑1 (MQ=255)
                                                                                      gCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCata             <  2:2635125/98‑1 (MQ=255)
                                                                                      gCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCata             >  1:328674/1‑98 (MQ=255)
                                                                                      gCCTTTGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCata             <  1:449687/98‑1 (MQ=255)
                                                                                      gCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTAGCAGTTATTCTCGAATCata             >  2:1149022/1‑98 (MQ=255)
                                                                                          ttGCTAAGTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCatatata         >  2:974233/1‑98 (MQ=255)
                                                                                           tGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCatatatat        <  1:1084458/98‑1 (MQ=255)
                                                                                            gCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCATATATAtg       <  2:5834/98‑1 (MQ=255)
                                                                                                aCTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCATATATAtgttgt   <  2:3196287/98‑1 (MQ=255)
                                                                                                aCTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCATATATAtgttgt   <  2:1229256/98‑1 (MQ=255)
                                                                                                 cTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCATATATATGTTGTc  >  1:2433106/1‑98 (MQ=255)
                                                                                                 |                                                                                                 
TTTCAAGTGATTCGATAGTATATATCTCGTCAAACTCATCTTTGTTCTGACCTGACTTGCTCAGACCAATTAAATTCATATTAAAAGCCTTTGCTAACTTCGCAGTTCTAGTAGCAATTGCACCTGTACCTAAAAATAAAACTGTTTGTCCTGATAGGCGTTTACCAGTTATTTTCGAATCATATATATGTTGTC  >  BX571857/1945385‑1945579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: