| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 980997 = | NA (NA) | 5 (0.320) | 5/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
ACTAAAATCCATCTGCCCTTTTTATGCCCTTTTTTACCTTGCAACACATTCTGAACACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTAACACCTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < BX571857/981112‑980997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcattatgacacattaacacctaatGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTAAATATTTTCCACTCGTGT < BX571857/1025750‑1025656 ACTAAAATCCATCTGCCCTTTTTATGCCCTTTTTTACCTTGCAACACATTCTGAACACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTA > 1:289805/1‑97 CTAAAATCCATCTGCCCTTTTTATGCCCTTTTTTACCTTTCAACACATTCTGAACACCTTGAAAACACTGAAATTAAGGCGTTATCTGTATCATTAT > 2:358199/1‑97 AAAATCCATCTGCCCTTTTTATGCCCTTTTTTACCTTGCAACACATTCTGAACACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGA < 1:193203/97‑1 ATCTGCCCTTTTTATGCCCTTTTTTACCTTGCAACACATTCTGAACACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTA > 1:364825/1‑97 TGCCCTTTTTATGCCCTTTTTTACCTTGCAACACATTCTGAACACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTAACA < 2:212800/97‑1 CTTTTTATGCCCTTTTTTACCTTGCAACACATTCTGAACACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTAACACCTA > 2:238652/1‑97 TTTATGCCCTTTTTTACCTTGCAACACATTCTGAACACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTAACACCTAATG < 2:266598/97‑1 TACCTTGCAACACATTCTGAACACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTAACACCTAATGGTAAAACGGCCATT > 2:34951/1‑97 ATTCTGAACACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTAACACCTAATGGTAAAACGGCCATTCTCAAACGTACAC < 1:228862/97‑1 CACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTAACACCTAATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTT > 1:334231/1‑97 ACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTAACACCTAATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTA < 1:223502/97‑1 CCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTAACACCTAATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAA > 2:225707/1‑97 TATCATTATGACACATTAACACCTAATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTT > 2:141938/1‑97 ATGACACATTAACACCTAATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTA > 2:320617/1‑97 GACACATTAACACCTAATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTAAA > 2:250193/1‑97 GACACATTAACACCTAATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTAAA < 2:74834/97‑1 ACATTAACACCTAATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTAAATAT > 2:200042/1‑97 CATTAACACCTAATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTAAATATT < 2:348908/97‑1 TAATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTAAATATTTTCCACTCGT > 1:360743/1‑97 AATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTAAATATTTTCCACTCGTG > 2:147504/1‑97 ATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTAAATATTTTCCACTCGTGT > 1:306783/1‑97 ATGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTAAATATTTTCCACTCGTGT > 2:382346/1‑97 ACTAAAATCCATCTGCCCTTTTTATGCCCTTTTTTACCTTGCAACACATTCTGAACACCTTGAAAACACTGTAATTAAGGCGTTATCTGTATCATTATGACACATTAACACCTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < BX571857/981112‑980997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcattatgacacattaacacctaatGGTAAAACGGCCATTCTCAAACGTACACGAACGTTTAAAAACGCTGTAATATCAAAGTTTTTATCACTTTAACTTTAAATATTTTCCACTCGTGT < BX571857/1025750‑1025656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |