New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BX571858 1 =0 (0.000)13 (0.990) 12/170 NT 100% intergenic (–/‑11) –/pSAS01 –/putative ABC transporter ATP binding protein
?BX571858 = 20651 0 (0.000)intergenic (+5/–) pSAS24/– putative exported protein/–

TTCCTTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  BX571858/93‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCATTTTAAAAAGCTAGGAATATTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATATTCTTTTGTAG  <  BX571858/20651‑20561
                                                                                                                                                                                         
TTCCTTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCAT                                                                                          >  1:26118/1‑97
TTCCTTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTAAAAAAACATTTTCAAGTTTTATAACTATCGGTCACCTCAT                                                                                          >  2:215585/1‑97
   CTTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTT                                                                                       <  1:260350/97‑1
          AAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGC                                                                                <  1:194818/97‑1
              TTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGG                                                                            <  1:270757/97‑1
                              CTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATG                                                            >  1:215448/1‑97
                                 AAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTAT                                                         <  1:87050/97‑1
                                    TGTTTTTATTCCCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCT                                                      <  2:335280/97‑1
                                                 TTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACAT                                         <  2:8308/97‑1
                                                        ACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCC                                  <  2:346342/97‑1
                                                               CATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGA                           <  1:364723/97‑1
                                                               CATTTTCAAGTTATAACACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCGTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGA                           <  1:124456/97‑1
                                                                  TTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTT                        >  2:295215/1‑97
                                                                             ATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATA             >  2:102622/1‑97
                                                                                ACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATATTC          >  1:181728/1‑97
                                                                                        TCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATATTCTTTTGTAG  <  2:354609/97‑1
                                                                                                                                                                                         
TTCCTTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  BX571858/93‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCATTTTAAAAAGCTAGGAATATTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATATTCTTTTGTAG  <  BX571858/20651‑20561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.