New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BX571858 1 =0 (0.000)13 (0.990) 12/170 NT 100% intergenic (–/‑11) –/pSAS01 –/putative ABC transporter ATP binding protein
?BX571858 = 20651 0 (0.000)intergenic (+5/–) pSAS24/– putative exported protein/–

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGAAAAAGGAA  >  BX571858/1‑93
                                                                                            |                                                                                            
ctacaaaagaatatgtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGa                                                                                          <  2:354609‑M1/5‑1 (MQ=255)
        gaatatgtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGt                                                                                  >  1:181728‑M1/85‑97 (MQ=255)
           tatgtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGAt                                                                               >  2:102622‑M1/82‑97 (MQ=255)
                      aaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGaaa                                                                    >  2:295215‑M1/71‑97 (MQ=255)
                         tcataaagggaaatatgtgcgttcgatagaatacattacaaacgatattcctagctttttaaaatgaGGTGACCGATAGTGTTATAACTTGAAAATg                                                                 <  1:124456‑M1/30‑1 (MQ=255)
                         tcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATg                                                                 <  1:364723‑M1/30‑1 (MQ=255)
                                gggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGt                                                          <  2:346342‑M1/37‑1 (MQ=255)
                                       atgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTaaaaaaa                                                   <  2:8308‑M1/44‑1 (MQ=255)
                                                    agaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGGAATAAAAACa                                      <  2:335280‑M1/57‑1 (MQ=255)
                                                       atacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACAttt                                   <  1:87050‑M1/60‑1 (MQ=255)
                                                          cattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAg                                >  1:215448‑M1/35‑97 (MQ=255)
                                                                          cctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTaa                <  1:270757‑M1/79‑1 (MQ=255)
                                                                              gctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAAtttt            <  1:194818‑M1/83‑1 (MQ=255)
                                                                                     aaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGAAAAAg     <  1:260350‑M1/90‑1 (MQ=255)
                                                                                        atgaGGTGACCGATAGTTATAAAACTTGAAAATGTTTTTTTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGAAAAAGGaa  >  2:215585‑M1/5‑97 (MQ=255)
                                                                                        atgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGAAAAAGGaa  >  1:26118‑M1/5‑97 (MQ=255)
                                                                                            |                                                                                            
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGAAAAAGGAA  >  BX571858/1‑93

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.