mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 10,884 | G→A | 64.7% | intergenic (‑299/‑9) | SAS0007 ← / → SAS0008 | conserved hypothetical protein/putative histidine ammonia‑lyase |
| RA | BX571857 | 292,191 | G→A | 21.0% | F98F (TTC→TTT) | SAS0247 ← | putative sugar transport protein |
| RA | BX571857 | 431,505 | T→C | 10.2% | S77P (TCA→CCA) | SAS0387 → | exotoxin |
| RA | BX571857 | 545,010 | G→A | 6.2% | intergenic (+413/+298) | unknown → / ← SAS0475 | –/GntR family regulatory protein |
| RA | BX571857 | 605,238 | T→C | 5.1% | S1034S (AGT→AGC) | SAS0521 → | bone sialoprotein‑binding protein |
| RA | BX571857 | 733,955 | G→A | 8.9% | G422D (GGC→GAC) | SAS0655 → | putative sodium:sulfate symporter protein |
| RA | BX571857 | 848,832 | T→G | 21.6% | G227G (GGT→GGG) | SAS0756 → | thermonuclease precursor |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 1,937,435 | A→G | 6.4% | noncoding (62/90 nt) | tRNA Ser anticodon TGA_ Cove score 61.04 ← | tRNA‑Ser |
| RA | BX571857 | 2,778,533 | T→C | 5.1% | N912S (AAC→AGC) | SAS2578 ← | collagen adhesin precursor |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 40 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 980997 = | NA (NA) | 7 (0.080) | 7/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 35 (0.920) | 28/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||