New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BX571858	1 =	0 (0.000)	35 (0.920)	28/170	NT	100%	intergenic (–/‑11)	–/pSAS01	–/putative ABC transporter ATP binding protein
	?	BX571858	= 20651	0 (0.000)					intergenic (+5/–)	pSAS24/–	putative exported protein/–

TTTCCTTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  BX571858/94‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCATTTTAAAAAGCTAGGAATAT‑TTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATATTCTTTTGTAG  <  BX571858/20651‑20561                                                                                                                                                                                            TTTCCTTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCA                                                                                           >  2:975437/1‑97     CTTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTT                                                                                       <  1:2014126/97‑1     CTTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTT                                                                                       <  1:627871/97‑1      TTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTA                                                                                      >  2:1503228/1‑97       TTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTCTCACTATCGGTCACCTCACTTTAA                                                                                     >  1:1325500/1‑97        TTTCAAAATTAAAGTTACATCCGGCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTTTCACTATCGGTCACCTCATTTTAAA                                                                                    <  2:27674/97‑1                TTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGG                                                                            >  2:1418374/1‑97                TTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGG                                                                            >  2:1418338/1‑97                     GTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATAT                                                                       >  1:1816516/1‑97                     GTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATAT                                                                       <  2:1034149/97‑1                            CCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGT                                                                <  2:15408/97‑1                                CTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATG                                                            >  1:934542/1‑97                                 TAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGT                                                           <  2:77857/97‑1                                     ATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTC                                                       >  1:1149369/1‑97                                     ATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTC                                                       >  1:47407/1‑97                                       GTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATAGGTCACCTCATTTTAATAAGCTAGGAATATCTTTTGTAGTGTATCCTA                                                     >  2:11809/1‑97                                        TTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTAT                                                    >  1:631877/1‑97                                              TTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACG                                              <  1:691300/97‑1                                                    TTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATA                                        <  1:2126323/97‑1                                                    TTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATA                                        <  2:1545381/97‑1                                                     TTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATAT                                       >  2:2123348/1‑97                                                          ACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCC                                  <  2:931177/97‑1                                                          ACAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCC                                  <  2:178467/97‑1                                                           CAAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCT                                 <  1:942902/97‑1                                                            AAAAACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTT                                <  1:1125551/97‑1                                                               AACATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTAT                             >  2:1575372/1‑97                                                                 CATTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGA                           <  1:1324600/97‑1                                                                   TTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATT                         >  2:871740/1‑97                                                                   TTTTCAAGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATT                         >  2:90984/1‑97                                                                         AGTTTTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTT                   <  1:2058790/97‑1                                                                             TTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACA               <  1:1418338/97‑1                                                                             TTATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACA               <  1:1418374/97‑1                                                                              TATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACAT              >  1:2060477/1‑97                                                                               ATCACTATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACTTA             >  2:1368465/1‑97                                                                                    TATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATATTCTT        >  2:1419858/1‑97                                                                                     ATCGGTCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATATTCTTT       >  1:708858/1‑97                                                                                          TCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAGCGCACATATTTCCCTTTATGATTTACTTTCACATATTCTTTTGTAG  <  2:1548549/97‑1                                                                                          TCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATATTCTTTTGTAG  <  2:2108718/97‑1                                                                                          TCACCTCATTTTAAAAAGCTAGGAATATCTTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATATTCTTTTGTAG  >  2:1396700/1‑97                                                                                                                                                                                            TTTCCTTTTTCAAAATTAAAGTTACATCCGTCTAAAATGTTTTTATTACCTTTTTTTACAAAAACATTTTCAAGTTTTATCACTATCGGTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  BX571858/94‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCATTTTAAAAAGCTAGGAATAT‑TTTTGTAATGTATTCTATCGAACGCACATATTTCCCTTTATGATTTACTTTCACATATTCTTTTGTAG  <  BX571858/20651‑20561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.