Predicted mutation
evidence seq id position mutation freq annotation gene description
RA BX571857 545,010 G→A 6.2% intergenic (+413/+298) unknown → / ← SAS0475 –/GntR family regulatory protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*BX571857545,0100GA 6.2% 546.1 / 15.3 153intergenic (+413/+298)unknown/SAS0475–/GntR family regulatory protein
Reads supporting (aligned to +/- strand):  ref base G (53/89);  new base A (4/7);  total (57/96)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 163 total aligned reads displayed.

CTCTTTTTTTATGTCTAAAACGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTATAAC  >  BX571857/544914‑545104
                                                                                                 |                                                                                              
   tttttttATGTCTAAAACGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAgcgc                                                                                             <  2:1520518/97‑1 (MQ=255)
   tttttttATGTCTAAAACGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAgcgc                                                                                             <  2:1019279/97‑1 (MQ=255)
     tttttATGTCTAAAACGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCaa                                                                                           >  2:1096447/1‑97 (MQ=255)
       tttATGTCTAAAACGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACg                                                                                         <  1:218815/97‑1 (MQ=255)
         tATGTCTAAAACGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAg                                                                                       <  1:2003939/97‑1 (MQ=255)
            gTCTAAAACGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGttt                                                                                    <  1:1265175/97‑1 (MQ=255)
              cTAAAACGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtag                                                                                  <  1:1354638/97‑1 (MQ=255)
              cTAAAACGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtag                                                                                  >  1:920674/1‑97 (MQ=255)
                 aaaCGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtagtag                                                                               >  1:417248/1‑97 (MQ=255)
                 aaaCGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtagtag                                                                               <  1:1628878/97‑1 (MQ=255)
                 aaaCGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGGTtagtag                                                                               >  2:2127804/1‑97 (MQ=255)
                  aaCGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGGTTAGTaga                                                                              >  1:32069/1‑97 (MQ=255)
                     gTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCt                                                                           >  2:2072218/1‑97 (MQ=255)
                     gTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCt                                                                           >  1:641948/1‑97 (MQ=255)
                       cAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTaa                                                                         <  1:1065075/97‑1 (MQ=255)
                          aaTAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATg                                                                      >  1:423931/1‑97 (MQ=255)
                           aTAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGa                                                                     >  2:348323/1‑97 (MQ=255)
                           aTAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGa                                                                     >  2:299487/1‑97 (MQ=255)
                            tAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAg                                                                    <  1:1022575/97‑1 (MQ=255)
                              aaaGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTa                                                                  >  1:1010511/1‑97 (MQ=255)
                                aGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAg                                                                >  2:424179/1‑97 (MQ=255)
                                aGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAg                                                                >  2:476772/1‑97 (MQ=255)
                                   tAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGGGTTTAGTAGAGCTAAATGAGTAAGCga                                                             <  2:878104/97‑1 (MQ=255)
                                    aaCACAAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCga                                                             <  2:1448282/97‑1 (MQ=16)
                                    aaCACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCgag                                                            >  1:763011/1‑97 (MQ=40)
                                    aaCACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCgag                                                            <  1:2169403/97‑1 (MQ=40)
                                     acacAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCgaga                                                           <  2:1363762/97‑1 (MQ=39)
                                      cacaAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGagag                                                          >  2:1004994/1‑97 (MQ=40)
                                        caAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGcc                                                        >  2:270450/1‑97 (MQ=40)
                                           aggAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCga                                                      <  2:1061502/95‑1 (MQ=21)
                                            aGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCgaa                                                     <  2:60323/97‑1 (MQ=35)
                                            aGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCgaa                                                     <  2:198559/97‑1 (MQ=35)
                                              aaaaTGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCgaaga                                                   <  2:2031353/97‑1 (MQ=34)
                                              aaaaTGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAAAGAGTTTAGTAGAGCTAAATGAGAAAGCGAGAGCCgaaga                                                   >  2:1565427/1‑97 (MQ=255)
                                               aaaTGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCgaagaa                                                  <  1:1843847/97‑1 (MQ=35)
                                               aaaTGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCgaagaa                                                  >  1:1814775/1‑97 (MQ=37)
                                                aaTGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGaaa                                                 <  2:1712226/97‑1 (MQ=38)
                                                  tGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAAt                                               <  2:1560816/97‑1 (MQ=39)
                                                   ggCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAACGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGaaaagg                                              >  2:726488/1‑95 (MQ=1)
                                                   ggCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGGGAAAAGCGCGCCACGAGGTTAGTAGAGCGAAATGAGTAAGCGCGAGCCGAAGAAAATg                                              >  2:789607/1‑97 (MQ=14)
                                                    gCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGa                                             >  2:1263639/1‑97 (MQ=18)
                                                     cTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGAt                                            <  1:1089777/97‑1 (MQ=255)
                                                      ttGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATa                                           <  1:895969/97‑1 (MQ=255)
                                                      ttGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATa                                           >  1:580539/1‑97 (MQ=255)
                                                      ttGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATa                                           <  1:295357/97‑1 (MQ=255)
                                                        gACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAAt                                         >  1:2132923/1‑97 (MQ=255)
                                                         aCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAAtt                                        <  2:1296241/97‑1 (MQ=255)
                                                          cGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAAttt                                       <  2:1138693/97‑1 (MQ=255)
                                                           gAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTta                                      >  2:1537290/1‑97 (MQ=255)
                                                           gAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTta                                      >  2:257323/1‑97 (MQ=255)
                                                            aaGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTtaa                                     <  2:624444/97‑1 (MQ=255)
                                                             aGTGAAAACGTTTGAATCTGGCCAAACGAGAAACGAGCGCCTCGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTtaat                                    <  2:95075/97‑1 (MQ=17)
                                                             aGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTtaat                                    <  1:1484351/97‑1 (MQ=255)
                                                              gTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTtaata                                   >  1:1649666/1‑97 (MQ=255)
                                                              gTGAAAACGGTTGAATCTGCCGAAACGAGAAAAGAGCGCAACGAGATTAGTAGAGCTAAATGAGTAAGCGAGAGACGAAGAAAATGAtaatataata                                   >  2:372781/1‑97 (MQ=14)
                                                               tGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTtaataa                                  <  2:1499579/97‑1 (MQ=255)
                                                                gAAAACGTTTGAATCTGACGAAACGAGAAAAGAACGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGa                                             <  2:554122/85‑1 (MQ=255)
                                                                   aaCGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTa                              >  2:1833288/1‑97 (MQ=255)
                                                                    aCGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTac                             <  2:1923214/97‑1 (MQ=255)
                                                                    aCGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTac                             >  2:1526736/1‑97 (MQ=255)
                                                                     cGTTTGAATCTGACGAAACGAGAAAAGAACGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTaca                            <  2:1473151/97‑1 (MQ=255)
                                                                      gTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTacac                           <  2:1751420/97‑1 (MQ=255)
                                                                      gTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTacac                           <  2:604828/97‑1 (MQ=255)
                                                                      gTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTacac                           <  2:550414/97‑1 (MQ=255)
                                                                      gTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTacac                           <  1:641268/97‑1 (MQ=255)
                                                                       tttGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACt                          <  1:1059571/97‑1 (MQ=255)
                                                                       tttGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACt                          <  1:530913/97‑1 (MQ=255)
                                                                       tttGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACt                          <  1:1341068/97‑1 (MQ=255)
                                                                        ttGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACtt                         <  2:2176655/97‑1 (MQ=255)
                                                                        ttGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACtt                         <  2:105797/97‑1 (MQ=255)
                                                                         tGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACttt                        >  1:518567/1‑97 (MQ=255)
                                                                          gAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTc                       <  1:1398972/97‑1 (MQ=255)
                                                                           gaTCTGACGGAACGAGAAAGGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAGAATGATAATTTAATAATGTACACTTTCg                      <  2:207272/96‑1 (MQ=18)
                                                                           aaTCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCg                      <  1:859573/97‑1 (MQ=255)
                                                                           aaTCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCg                      <  2:168677/97‑1 (MQ=255)
                                                                           aaTCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCg                      <  2:75640/97‑1 (MQ=255)
                                                                           aaTCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCg                      <  2:168779/97‑1 (MQ=255)
                                                                           aaTCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCg                      <  1:964720/97‑1 (MQ=255)
                                                                            aTCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGa                     <  1:1742453/97‑1 (MQ=255)
                                                                            aTCTGACGAAACGAGAAAAGAACGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGa                     <  1:1230943/97‑1 (MQ=255)
                                                                             tCTGACGAAACGAGAAAAGAACGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGAt                    <  2:385126/97‑1 (MQ=255)
                                                                              cTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGAtt                   >  1:1798706/1‑97 (MQ=255)
                                                                               tGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCgaagaa                                                  <  1:1975511/65‑1 (MQ=33)
                                                                               tGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTg                  >  1:881443/1‑97 (MQ=255)
                                                                               tGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTg                  <  1:682330/97‑1 (MQ=255)
                                                                               tGACGAAACGAGAAAAGAACGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCgaagaa                                                  >  2:1975511/1‑65 (MQ=16)
                                                                                   gAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTa              <  2:1483033/97‑1 (MQ=255)
                                                                                     aaCGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAg            <  1:1401623/97‑1 (MQ=255)
                                                                                      aCGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAgt           >  2:1820248/1‑97 (MQ=255)
                                                                                         agaAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAgtatg        <  2:1753779/97‑1 (MQ=255)
                                                                                         agaAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAgtatg        <  1:1920700/97‑1 (MQ=255)
                                                                                         agaAAAGAACGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAgtatg        <  1:44178/97‑1 (MQ=255)
                                                                                          gaAAAGAACGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAgtatgt       <  2:1219505/97‑1 (MQ=255)
                                                                                           aaaaGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAgtatgta      >  1:1777806/1‑97 (MQ=255)
                                                                                            aaaGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAgtatgtat     <  2:87577/97‑1 (MQ=255)
                                                                                             aaGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGtata    <  2:426290/97‑1 (MQ=255)
                                                                                             aaGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGtata    <  1:501926/97‑1 (MQ=255)
                                                                                             aaGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCATAAGAAGATGATAATTTAATAGTGTACACTTTCGATTGTCTAAGTATGtata    <  1:1085996/97‑1 (MQ=25)
                                                                                               gagCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTATAAc  <  2:423069/97‑1 (MQ=255)
                                                                                               gagCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTATAAc  <  2:1258778/97‑1 (MQ=255)
                                                                                                 |                                                                                              
CTCTTTTTTTATGTCTAAAACGTCAAAATAAAAGTTAACACAAAGAAAATGGCTTGACGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTATAAC  >  BX571857/544914‑545104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: