Predicted mutation
evidence seq id position mutation freq annotation gene description
RA BX571858 20,628:1 +G 100% coding (288/306 nt) pSAS24 → putative exported protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*BX57185820,6281.G99.7% 1356.3 / ‑2.2 303coding (288/306 nt)pSAS24putative exported protein
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base G (151/151);  total (152/151)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 333 total aligned reads displayed.

GTTATAAATTGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAATATTCCTAGCTTTTTAAAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑G  >  BX571858/20531‑20652
                                                                                                  |                                                                                             
 ttATAAATTGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACaaaag                                                                                               <  2:112652/98‑2 (MQ=255)
  tataAATTGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACaaaaga                                                                                              >  2:1104483/1‑96 (MQ=255)
  tataAATTGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACaaaaga                                                                                              >  2:2188616/1‑96 (MQ=255)
  tataAATTGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACaaaaga                                                                                              >  1:3234810/1‑96 (MQ=255)
    taAATTGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACaaaagata                                                                                            >  1:145421/1‑94 (MQ=255)
       aTTGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTc                                                                                         >  1:2967568/1‑98 (MQ=255)
       aTTGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTc                                                                                         >  1:3049032/1‑98 (MQ=255)
         tGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCt                                                                                       >  2:3533161/1‑98 (MQ=255)
         tGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCt                                                                                       >  2:414150/1‑98 (MQ=255)
          ggATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTa                                                                                      >  2:2316015/1‑98 (MQ=255)
          ggATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTa                                                                                      >  1:628352/1‑98 (MQ=255)
            aTTTTTTTTGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGc                                                                                    >  2:3295711/1‑98 (MQ=255)
            aTTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGc                                                                                    <  2:2297822/98‑1 (MQ=255)
            aTTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGc                                                                                    <  1:641201/98‑1 (MQ=255)
            aTTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGc                                                                                    >  2:1312266/1‑98 (MQ=255)
             ttttttAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCt                                                                                   <  1:2663665/98‑1 (MQ=255)
                  tAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTa                                                                              >  2:2895304/1‑98 (MQ=255)
                   aGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTaa                                                                             <  1:1779032/98‑1 (MQ=255)
                   aGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTaa                                                                             >  1:318911/1‑98 (MQ=255)
                   aGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTaa                                                                             >  1:254711/1‑98 (MQ=255)
                    ggTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTaaa                                                                            >  2:3253272/1‑98 (MQ=255)
                     gctATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTaaaa                                                                           >  2:1388836/3‑98 (MQ=255)
                      ttATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAAt                                                                          >  2:658233/1‑98 (MQ=255)
                      ttATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAAt                                                                          <  1:494419/98‑1 (MQ=255)
                         tGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAg                                                                       <  1:975288‑M2/98‑2 (MQ=255)
                           aTCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggt                                                                     <  1:2314678‑M2/98‑4 (MQ=255)
                            tCCTACAAAAGAATATGTGAACGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtg                                                                    <  1:2107858‑M2/98‑5 (MQ=255)
                               tACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgacc                                                                 <  2:2611543‑M2/98‑8 (MQ=255)
                                aCAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAgttgaccg                                                                <  2:470688‑M2/98‑9 (MQ=255)
                                aCAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccg                                                                >  1:190355‑M2/1‑90 (MQ=255)
                                aCAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccg                                                                >  1:3359600‑M2/1‑90 (MQ=255)
                                  aaaaGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgat                                                              <  2:1020327‑M2/98‑11 (MQ=255)
                                  aaaaGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgat                                                              >  1:1869731‑M2/1‑88 (MQ=255)
                                  aaaaGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgat                                                              >  1:3471566‑M2/1‑88 (MQ=255)
                                   aaaGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgata                                                             <  2:2058659‑M2/98‑12 (MQ=255)
                                    aaGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatag                                                            <  1:3421975‑M2/98‑13 (MQ=255)
                                     aGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagt                                                           <  1:1091742‑M2/98‑14 (MQ=255)
                                     aGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagt                                                           <  1:3121437‑M2/98‑14 (MQ=255)
                                      gAATATGTGAACGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtg                                                          <  2:2966757‑M2/98‑15 (MQ=255)
                                      gAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtg                                                          <  1:751007‑M2/98‑15 (MQ=255)
                                       aaTATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtga                                                         <  2:115129‑M2/98‑16 (MQ=255)
                                        atatGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgat                                                        <  2:3604675‑M2/98‑17 (MQ=255)
                                        atatGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgat                                                        <  2:1293319‑M2/98‑17 (MQ=255)
                                         tatGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgata                                                       <  2:3382665‑M2/98‑18 (MQ=255)
                                          atGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataa                                                      <  1:818023‑M2/98‑19 (MQ=255)
                                           tgtgAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaa                                                     >  2:3004841‑M2/1‑79 (MQ=255)
                                           tgtgAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaa                                                     >  2:1953435‑M2/1‑79 (MQ=255)
                                           tgtgAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaa                                                     <  1:1348930‑M2/98‑20 (MQ=255)
                                            gtgAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaa                                                    <  1:1433904‑M2/98‑21 (MQ=255)
                                             tgAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaac                                                   >  2:2209655‑M2/1‑77 (MQ=255)
                                             tgAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaac                                                   >  1:513966‑M2/1‑77 (MQ=255)
                                                aaGTAAATCATAAAGGGAAATATGTGCGTTCGATAGGATACATTACAAAAGATAGTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttg                                                <  2:2532951‑M2/98‑25 (MQ=255)
                                                  gTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaa                                              >  1:1735481‑M2/1‑72 (MQ=255)
                                                   tAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaa                                             <  2:1524075‑M2/98‑28 (MQ=255)
                                                    aaaTCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaa                                            <  1:2793127‑M2/98‑29 (MQ=255)
                                                     aaTCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaat                                           >  2:581695‑M2/1‑69 (MQ=255)
                                                      aTCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatg                                          >  1:169537‑M2/1‑68 (MQ=255)
                                                         aTAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgttt                                       >  2:275573‑M2/1‑65 (MQ=255)
                                                         aTAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgttt                                       <  1:124607‑M2/98‑34 (MQ=255)
                                                         aTAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgttt                                       >  1:285454‑M2/1‑65 (MQ=255)
                                                         aTAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgttt                                       <  1:3570710‑M2/98‑34 (MQ=255)
                                                          tAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttt                                      <  2:2808910‑M2/98‑35 (MQ=255)
                                                          tAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttt                                      <  1:2122513‑M2/98‑35 (MQ=255)
                                                           aaaGGGAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgttttt                                     >  1:2487963‑M2/1‑63 (MQ=255)
                                                              gggAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgta                                  <  2:1666798‑M2/98‑39 (MQ=255)
                                                               ggAAATATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaa                                 <  1:2159637‑M2/98‑40 (MQ=255)
                                                                 aaaTATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaa                               <  2:861017‑M2/98‑42 (MQ=255)
                                                                 aaaTATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaa                               <  1:3526019‑M2/98‑42 (MQ=255)
                                                                  aaTATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaa                              >  1:2425089‑M2/1‑56 (MQ=255)
                                                                  aaTATGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaa                              <  1:2733359‑M2/98‑43 (MQ=255)
                                                                   atatGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaa                             <  1:2026581‑M2/98‑44 (MQ=255)
                                                                    tatGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaa                            >  2:809494‑M2/1‑54 (MQ=255)
                                                                     atGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaag                           <  1:1189156‑M2/98‑46 (MQ=255)
                                                                     atGTGCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaag                           >  1:3273696‑M2/1‑53 (MQ=255)
                                                                       gtgCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggt                         >  2:1847184‑M2/1‑51 (MQ=255)
                                                                         gCGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaa                       >  2:2448768‑M2/1‑49 (MQ=255)
                                                                          cGTTCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaat                      >  1:378807‑M2/1‑48 (MQ=255)
                                                                             tCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaa                   >  1:3030185‑M2/1‑45 (MQ=255)
                                                                             tCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaa                   <  1:364731‑M2/98‑54 (MQ=255)
                                                                             tCGATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaa                   <  1:926129‑M2/98‑54 (MQ=255)
                                                                               gATAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaa                 <  1:941995‑M2/98‑56 (MQ=255)
                                                                                aTAGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaac                >  1:2045477‑M2/1‑42 (MQ=255)
                                                                                  aGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacat              >  2:2674042‑M2/1‑40 (MQ=255)
                                                                                  aGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacat              >  1:3631628‑M2/1‑40 (MQ=255)
                                                                                  aGAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacat              >  2:3090658‑M2/1‑40 (MQ=255)
                                                                                   gAATACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacatt             >  1:1006637‑M2/1‑39 (MQ=255)
                                                                                    aaTACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattt            >  1:3547578‑M2/1‑38 (MQ=255)
                                                                                    aaTACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattt            >  2:2177111‑M2/1‑38 (MQ=255)
                                                                                     aTACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacatttt           <  2:1503096‑M2/98‑62 (MQ=255)
                                                                                      tACATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacatttta          >  1:1548654‑M2/1‑36 (MQ=255)
                                                                                       aCATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattttag         >  1:3330280‑M2/1‑35 (MQ=255)
                                                                                       aCATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattttag         <  1:3374308‑M2/98‑64 (MQ=255)
                                                                                        cATTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattttaga        <  2:919694‑M2/98‑65 (MQ=255)
                                                                                         aTTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattttagac       <  2:3472819‑M2/98‑66 (MQ=255)
                                                                                         aTTACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattttagac       >  2:3131805‑M2/1‑33 (MQ=255)
                                                                                          ttACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattttagacg      <  1:2583989‑M2/98‑67 (MQ=255)
                                                                                           tACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattttagacgg     >  1:985665‑M2/1‑31 (MQ=255)
                                                                                           tACAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattttagacgg     >  1:2807094‑M2/1‑31 (MQ=255)
                                                                                             cAAAAGATATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattttagacggat   >  1:339349‑M2/1‑29 (MQ=255)
                                                                                             aaaagatATTCCTAGCTTTTTAAAATGAggtgaccgatagtgataaaacttgaaaatgtttttgtaaaaaaaggtaataaaaacattttagacggatg  <  2:2718915‑M2/97‑71 (MQ=255)
                                                                                                  |                                                                                             
GTTATAAATTGGATTTTTTAGGTTATGATCCTACAAAAGAATATGTGAAAGTAAATCATAAAGGGAAATATGTGCGTTCGATAGAATACATTACAAAAATATTCCTAGCTTTTTAAAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑G  >  BX571858/20531‑20652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: