Predicted mutation
evidence seq id position mutation freq annotation gene description
RA BX571857 1,233,404 T→G 34.7% V109V (GTT→GTG SAS1155 → conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*BX5718571,233,4040TG34.7% 239.7 / inf 229V109V (GTT→GTGSAS1155conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (58/91);  new base G (42/37);  total (100/129)
Fisher's exact test for biased strand distribution p-value = 4.95e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.20e-01

Only 100 of 233 total aligned reads displayed.

TAATTGTAATGAGTGCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTATGAGACTGAATTT  >  BX571857/1233310‑1233500
                                                                                              |                                                                                                
   tggTAATGAGTGCTGTCGAGCCAGATGTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGGTAAATGCGAGAGTTTTGGt                                                                                             <  2:1969808/95‑1 (MQ=255)
    tGTAATGAGTGCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTg                                                                                            <  1:1061746/97‑1 (MQ=255)
     gTAATGAGTGCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGa                                                                                           >  2:2001024/1‑97 (MQ=255)
       aaTGAGTGCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACt                                                                                         >  1:1209458/1‑97 (MQ=255)
        aTGAGTGCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTa                                                                                        >  2:1765123/1‑97 (MQ=255)
          gAGTGCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTaaa                                                                                      >  2:1138561/1‑97 (MQ=255)
          gAGTGCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTATTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTaaa                                                                                      >  2:3763629/1‑97 (MQ=255)
           aGTGCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGATATTGCACATTCGTATCAGTTACATGCGAGAGTGTTGGTGACTaaaa                                                                                     >  2:1581589/1‑97 (MQ=255)
            gTGCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTaaaaa                                                                                    >  1:2040261/1‑97 (MQ=255)
              gCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAg                                                                                  <  1:3804475/97‑1 (MQ=255)
              gCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAg                                                                                  >  1:4349224/1‑97 (MQ=255)
               cTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGa                                                                                 >  2:2029201/1‑97 (MQ=255)
                 gTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATa                                                                               >  1:452707/1‑97 (MQ=255)
                    taGCCAAAGTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTGAATGCGAGAGTTTTGGTGACTAAAAAAGATaaaa                                                                            <  2:1334757/96‑1 (MQ=255)
                    gacccAAATTTTTCAACGCAATTATTAGATCGATTTTGAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATaaaa                                                                            <  2:1675775/94‑1 (MQ=255)
                    aaGCCAAATTTTTAAACGCAATTATTAGAACGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGAGACTAAAAAAGATaaaa                                                                            >  2:1380326/2‑97 (MQ=255)
                     aGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAac                                                                           <  1:3745999/97‑1 (MQ=255)
                      gCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTAAAAAATAAAAAAGATAAAaca                                                                          <  2:3155915/97‑1 (MQ=255)
                       ccAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAacac                                                                         >  1:4579925/1‑97 (MQ=255)
                       ccAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAacac                                                                         <  1:2596970/97‑1 (MQ=255)
                        cAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACAcc                                                                        <  2:52182/97‑1 (MQ=255)
                         aaaTTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCa                                                                       <  2:3849434/97‑1 (MQ=255)
                         aaaTTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCa                                                                       <  1:1575973/97‑1 (MQ=255)
                          aaTTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAATAGATAAAACACCaa                                                                      >  1:112681/1‑97 (MQ=255)
                          aaTTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCaa                                                                      >  2:48839/1‑97 (MQ=255)
                                tCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGaaa                                                                <  1:847198/97‑1 (MQ=255)
                                tCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGaaa                                                                <  2:2410361/97‑1 (MQ=255)
                                tCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGaaa                                                                >  1:221748/1‑97 (MQ=255)
                                 cAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGaaaa                                                               <  1:161038/97‑1 (MQ=255)
                                  aaCGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAg                                                              <  2:865698/97‑1 (MQ=255)
                                  aaCGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAg                                                              >  1:3937316/1‑97 (MQ=255)
                                   aCGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGc                                                             <  2:768480/97‑1 (MQ=255)
                                    cGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCa                                                            >  1:1378992/1‑97 (MQ=255)
                                    cGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCa                                                            <  1:3652024/97‑1 (MQ=255)
                                     gCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAg                                                           >  1:2316415/1‑97 (MQ=255)
                                     gCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAg                                                           <  1:128938/97‑1 (MQ=255)
                                     gCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAg                                                           >  2:1299955/1‑97 (MQ=255)
                                      cAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGt                                                          <  1:1732767/97‑1 (MQ=255)
                                      cAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGt                                                          <  2:3245662/97‑1 (MQ=255)
                                        attattAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTc                                                        <  2:3559322/97‑1 (MQ=255)
                                         ttattaGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCg                                                       <  2:1863098/97‑1 (MQ=255)
                                         ttattaGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCg                                                       <  2:3810122/97‑1 (MQ=255)
                                          tattaGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGa                                                      >  2:1530842/1‑97 (MQ=255)
                                           attaGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGaa                                                     >  1:4108981/1‑97 (MQ=255)
                                           attaGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGaa                                                     >  2:3999341/1‑97 (MQ=255)
                                           attaGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGaa                                                     <  2:3380088/97‑1 (MQ=255)
                                           attaGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGaa                                                     <  2:4098849/97‑1 (MQ=255)
                                           attaGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGaa                                                     >  2:2409107/1‑97 (MQ=255)
                                           attaGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGaa                                                     <  2:3461657/97‑1 (MQ=255)
                                            ttaGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAACAAAGATAAAACACCAATTGAAAAGCAGTTCGaaa                                                    >  2:1105520/1‑97 (MQ=255)
                                              aGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAAtt                                                  >  1:803435/1‑97 (MQ=255)
                                              aGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAAtt                                                  >  1:4053669/1‑97 (MQ=255)
                                               gATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTa                                                 <  2:3506756/97‑1 (MQ=255)
                                               gATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTa                                                 <  2:3096211/97‑1 (MQ=255)
                                                aTCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTaa                                                <  1:2523882/97‑1 (MQ=255)
                                                aTCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGAAAAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTaa                                                <  2:608013/97‑1 (MQ=255)
                                                 tCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAAt                                               >  2:105130/1‑97 (MQ=255)
                                                 tCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAAt                                               >  1:2689827/1‑97 (MQ=255)
                                                 tCGATTTTTAGTTATTGCACATTCGTATCAGTTAAAGGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAAt                                               <  1:3421243/97‑1 (MQ=255)
                                                   gATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGa                                             <  2:3895122/97‑1 (MQ=255)
                                                    aTTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAg                                            <  1:1844158/97‑1 (MQ=255)
                                                    aTTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAg                                            <  2:2720558/97‑1 (MQ=255)
                                                    aTTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAg                                            >  2:4151607/1‑97 (MQ=255)
                                                     tttttAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAgt                                           <  2:1087054/97‑1 (MQ=255)
                                                     tttttAGTTATTGCACATTCGTATAAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAga                                           >  2:2836462/1‑96 (MQ=255)
                                                      ttttAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAgtt                                          <  1:1432368/97‑1 (MQ=255)
                                                       tttAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAgttg                                         >  1:580585/1‑97 (MQ=255)
                                                       tttAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAgttg                                         <  2:3154211/97‑1 (MQ=255)
                                                        ttAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAgttgt                                        <  1:2094748/97‑1 (MQ=255)
                                                          aGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGttgttg                                      <  2:3233600/97‑1 (MQ=255)
                                                          aGTTATTGAACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGttgttg                                      <  2:2066762/97‑1 (MQ=255)
                                                           gTTATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGa                                     <  2:1412517/97‑1 (MQ=255)
                                                            ttATTGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGaa                                    <  1:2128092/97‑1 (MQ=255)
                                                             tATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGaaa                                   <  1:597875/97‑1 (MQ=255)
                                                             aaTTGCACATTCGTATCAGTTAAATGCGAGAATGTTGGTGACAAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGaaa                                   <  2:4390186/96‑1 (MQ=255)
                                                               ttGCACATTTGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAat                                 <  1:2337687/97‑1 (MQ=255)
                                                               ttGCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAat                                 >  1:4095167/1‑97 (MQ=255)
                                                                 gCACATTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAatat                               >  2:73074/1‑97 (MQ=255)
                                                                  cacaTTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAatata                              >  1:3266753/1‑97 (MQ=255)
                                                                  cacaTTCGTATCAGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAatata                              <  2:1203084/97‑1 (MQ=255)
                                                                        cGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGaaaa                        >  1:65885/1‑97 (MQ=255)
                                                                          tATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAata                      <  1:3504897/97‑1 (MQ=255)
                                                                            tCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATAtt                    <  1:2739714/97‑1 (MQ=255)
                                                                             cAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTg                   >  1:2464546/1‑97 (MQ=255)
                                                                              aGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTgg                  >  1:2888701/1‑97 (MQ=255)
                                                                              aGTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTgg                  >  2:4203532/1‑97 (MQ=255)
                                                                               gTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGc                 <  1:865219/97‑1 (MQ=255)
                                                                               gTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGc                 <  2:131704/97‑1 (MQ=255)
                                                                               gTTAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGc                 <  1:309886/97‑1 (MQ=255)
                                                                                ttAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCt                <  2:4621523/97‑1 (MQ=255)
                                                                                 tAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTa               >  2:117899/1‑97 (MQ=255)
                                                                                 tAAATGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTa               >  2:672773/1‑97 (MQ=255)
                                                                                  aaaTGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTAt              >  2:2904186/1‑97 (MQ=255)
                                                                                   aaTGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTATg             <  1:1816467/97‑1 (MQ=255)
                                                                                    aTGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTATga            <  2:881791/97‑1 (MQ=255)
                                                                                     tGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTATgag           >  1:3023186/1‑97 (MQ=255)
                                                                                     tGCGAGAGTGTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTATgag           <  1:2600189/97‑1 (MQ=255)
                                                                                      gCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTATgaga          <  2:235369/97‑1 (MQ=255)
                                                                                          gagTGTTGGTGACTAAAAAAGATAAAACACCAACTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTATGAGACTGa      >  1:1172437/1‑97 (MQ=255)
                                                                                           agTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTATGAGACTGaa     <  1:925404/97‑1 (MQ=255)
                                                                                              |                                                                                                
TAATTGTAATGAGTGCTGTCGAGCCAAATTTTTCAACGCAATTATTAGATCGATTTTTAGTTATTGCACATTCGTATCAGTTAAATGCGAGAGTTTTGGTGACTAAAAAAGATAAAACACCAATTGAAAAGCAGTTCGAAATTAATGAGTTGTTGAAAATATATGAAAATATTGGCTATGAGACTGAATTT  >  BX571857/1233310‑1233500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: