mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 431,505 | T→C | 9.5% | S77P (TCA→CCA) | SAS0387 → | exotoxin |
| RA | BX571857 | 545,010 | G→A | 5.1% | intergenic (+413/+298) | unknown → / ← SAS0475 | –/GntR family regulatory protein |
| RA | BX571857 | 605,157 | T→C | 6.4% | D1007D (GAT→GAC) | SAS0521 → | bone sialoprotein‑binding protein |
| RA | BX571857 | 605,193 | T→C | 5.0% | D1019D (GAT→GAC) | SAS0521 → | bone sialoprotein‑binding protein |
| RA | BX571857 | 605,238 | T→C | 6.5% | S1034S (AGT→AGC) | SAS0521 → | bone sialoprotein‑binding protein |
| RA | BX571857 | 1,035,394 | A→T | 5.1% | intergenic (+392/‑249) | SAS0963 → / → SAS0964 | hypothetical protein/putative exported protein |
| RA | BX571857 | 1,233,404 | T→G | 34.7% | V109V (GTT→GTG) | SAS1155 → | conserved hypothetical protein |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| JC | BX571857 | 1,332,856 | 30 bp→30 bp | 15.8% | coding (185‑214/1239 nt) | SAS1239 → | conserved hypothetical protein |
| RA | BX571857 | 1,434,367 | T→A | 10.3% | G144G (GGT→GGA) | SAS1338 → | putative tetrahydrodipicolinate acetyltransferase |
| RA | BX571857 | 1,472,392 | G→T | 6.4% | pseudogene (3325/5622 nt) | ebh ← | very large surface anchored protein (pseudogene) |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 1,937,435 | A→G | 6.4% | noncoding (62/90 nt) | tRNA Ser anticodon TGA_ Cove score 61.04 ← | tRNA‑Ser |
| RA | BX571857 | 2,700,167 | T→G | 5.1% | E767D (GAA→GAC) | SAS2516 ← | fibrinogen and keratin‑10 binding surface anchored protein |
| JC | BX571857 | 2,705,150 | 30 bp→30 bp | 9.3% | coding (836‑865/1437 nt) | SAS2519 ← | arginine/ornithine antiporter |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 165482 | NA (NA) | 126 (0.570) | 7/136 | NT | 33.8% | coding (47/267 nt) | SAS0144 | hypothetical protein |
| ? | BX571857 | = 273445 | 313 (1.120) | coding (57/135 nt) | SAS0230 | hypothetical protein | |||||
| * | ? | BX571857 | 980997 = | NA (NA) | 23 (0.120) | 20/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571857 | = 2116011 | 294 (1.060) | 28 (0.100) +CA |
13/168 | NT | 9.7% | intergenic (+174/+293) | SAS1966/unknown | threonine dehydratase biosynthetic/– |
| ? | BX571857 | 2116271 = | 239 (0.860) | intergenic (+434/+33) | SAS1966/unknown | threonine dehydratase biosynthetic/– | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 469 (1.130) | 142/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||