mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 1,842,677 | Δ53 bp | coding (2107‑2159/2754 nt) | gacS ← | sensor protein GacS |
| RA | 1,851,958 | C→G | H334Q (CAC→CAG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 359689 | 48 (1.100) | 14 (0.330) | 12/256 | 2.8 | 23.5% | intergenic (+46/+74) | gbdR/PP_0299 | AraC family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 359707 | 45 (1.080) | intergenic (+64/+56) | gbdR/PP_0299 | AraC family transcriptional regulator/hypothetical protein | |||||
| * | ? | NC_002947 | = 652785 | 37 (0.850) | 30 (0.810) | 23/226 | 0.8 | 65.6% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | 1156328 = | 42 (0.970) | 12 (0.340) | 10/216 | 2.7 | 33.3% | intergenic (+25/‑191) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase |
| ? | NC_002947 | 1156401 = | 14 (0.400) | intergenic (+98/‑118) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase | |||||
| * | ? | NC_002947 | = 4586100 | 30 (0.690) | 16 (0.520) | 14/190 | 1.4 | 40.8% | intergenic (+139/+78) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | = 4586128 | 25 (0.810) | intergenic (+167/+50) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | = 4647641 | 19 (0.440) | 12 (0.390) | 9/188 | 2.4 | 41.1% | intergenic (+48/+83) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | = 4647671 | 21 (0.680) | intergenic (+78/+53) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
| * | ? | NC_002947 | 4808219 = | 1 (0.020) | 21 (0.660) | 9/196 | 2.6 | 67.0% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 20 (0.620) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 4886209 | 43 (0.990) | 9 (0.260) | 9/208 | 2.8 | 20.5% | intergenic (+43/+80) | PP_4295/PP_4296 | TetR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 4886238 | 36 (1.060) | intergenic (+72/+51) | PP_4295/PP_4296 | TetR family transcriptional regulator/hypothetical protein | |||||
| * | ? | NC_002947 | = 4896443 | 38 (0.870) | 12 (0.330) | 14/224 | 1.9 | 25.0% | intergenic (+31/‑177) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 4896490 | 40 (1.090) | intergenic (+78/‑130) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
| * | ? | NC_002947 | 5201627 = | 35 (0.810) | 9 (0.290) | 10/192 | 2.3 | 35.8% | intergenic (‑65/‑115) | PP_4582/PP_4583 | membrane protein/putative Peptidase |
| ? | NC_002947 | 5201722 = | 7 (0.220) | intergenic (‑160/‑20) | PP_4582/PP_4583 | membrane protein/putative Peptidase | |||||
| * | ? | NC_002947 | 5344519 = | 50 (1.150) | 12 (0.350) +29 bp |
11/208 | 2.3 | 27.5% | intergenic (+46/‑132) | pgi‑II/acsA‑II | glucose 6‑phosphate isomerase/acetyl‑CoA synthetase |
| ? | NC_002947 | = 5506607 | 31 (0.710) | intergenic (+18/‑181) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease | |||||
| * | ? | NC_002947 | = 5477178 | 21 (0.480) | 9 (0.300) | 8/184 | 2.6 | 36.3% | intergenic (+43/+69) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | = 5477195 | 17 (0.570) | intergenic (+60/+52) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
| * | ? | NC_002947 | = 5759491 | 26 (0.600) | 10 (0.300) | 9/202 | 2.7 | 30.9% | intergenic (+44/+112) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
| ? | NC_002947 | = 5759519 | 25 (0.760) | intergenic (+72/+84) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB | |||||
| * | ? | NC_002947 | = 5914240 | 34 (0.780) | 9 (0.260) | 9/210 | 2.8 | 29.1% | intergenic (+76/+77) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| ? | NC_002947 | = 5914280 | 17 (0.500) | intergenic (+116/+37) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase | |||||
| * | ? | NC_002947 | 6009165 = | 20 (0.460) | 14 (0.430) | 10/200 | 2.4 | 62.2% | intergenic (+6/+76) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| ? | NC_002947 | 6009242 = | 2 (0.060) | coding (1667/1668 nt) | PP_5263 | GGDEF domain‑containing protein | |||||