mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,443,578 | G→T | F205L (TTC→TTA) | PP_1262 ← | LysR family transcriptional regulator |
| MC JC | 1,842,677 | Δ53 bp | coding (2107‑2159/2754 nt) | gacS ← | sensor protein GacS |
| RA | 1,851,958 | C→G | H334Q (CAC→CAG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,277 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4075786 | NA (NA) | 87 (0.920) | 56/248 | 0.8 | 100% | intergenic (‑328/+113) | PP_3586/tpx | transposase/2‑Cys peroxiredoxin |
| ? | NC_002947 | = 4957611 | 0 (0.000) | intergenic (‑49/+114) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein | |||||
| * | ? | NC_002947 | = 4586100 | 42 (0.420) | 34 (0.480) | 27/186 | 2.4 | 56.8% | intergenic (+139/+78) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | = 4586128 | 22 (0.310) | intergenic (+167/+50) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | 4808219 = | 8 (0.080) | 50 (0.690) | 32/192 | 1.9 | 55.0% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 76 (1.050) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | 4957609 = | 0 (0.000) | 149 (1.530) | 73/256 | 0.3 | 100% | intergenic (‑47/+116) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein |
| ? | NC_002947 | 5222979 = | NA (NA) | intergenic (‑342/+37) | PP_4602/PP_4603 | AraC family transcriptional regulator/transposase | |||||