breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 4,977 C→T 14.8% intergenic (‑596/+35) trmF ← / ← trmE tRNA uridine 5‑carboxymethylaminomethyl modification protein/GTPase
RA 4,980 A→G 17.1% intergenic (‑599/+32) trmF ← / ← trmE tRNA uridine 5‑carboxymethylaminomethyl modification protein/GTPase
RA 26,837:1 +A 9.5% intergenic (+33/+152) PP_0021 → / ← PP_0022 hypothetical protein/hypothetical protein
RA 26,844 A→T 9.8% intergenic (+40/+145) PP_0021 → / ← PP_0022 hypothetical protein/hypothetical protein
RA 43,457 Δ1 bp 8.3% intergenic (+23/+70) PP_0040 → / ← cadA‑I hypothetical protein/cadmium translocating P‑type ATPase
RA 43,461:1 +A 8.9% intergenic (+27/+66) PP_0040 → / ← cadA‑I hypothetical protein/cadmium translocating P‑type ATPase
RA 68,340 G→T 11.6% intergenic (+28/+147) PP_0057 → / ← PP_0058 major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA 68,342 A→T 12.2% intergenic (+30/+145) PP_0057 → / ← PP_0058 major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA 68,344 A→C 14.1% intergenic (+32/+143) PP_0057 → / ← PP_0058 major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA 88,649 T→A 10.5% A223A (GCA→GCT)  betC ← choline‑sulfatase
RA 88,653 T→A 10.8% Q222L (CAG→CTG)  betC ← choline‑sulfatase
RA 88,657 T→A 11.4% S221C (AGC→TGC)  betC ← choline‑sulfatase
RA 105,000 G→A 15.2% intergenic (+100/‑207) PP_0099 → / → cynT hypothetical protein/carbonic anhydrase
RA 126,115 A→G 9.1% intergenic (+25/+25) PP_0120 → / ← thrB zinc ABC transporter/homoserine kinase
RA 126,116 C→T 9.4% intergenic (+26/+24) PP_0120 → / ← thrB zinc ABC transporter/homoserine kinase
RA 128,090 G→A 10.5% V190M (GTG→ATG) ‡ polA → DNA polymerase I
RA 128,091 T→C 10.5% V190A (GTG→GCG) ‡ polA → DNA polymerase I
RA 146,127 T→A 14.3% intergenic (+32/‑116) gltP → / → PP_0138 glutamate/aspartate‑proton DAACS transporter/membrane protein
RA 146,128 T→A 13.7% intergenic (+33/‑115) gltP → / → PP_0138 glutamate/aspartate‑proton DAACS transporter/membrane protein
RA 150,058 G→A 12.1% P298S (CCG→TCG)  PP_0142 ← ABC transporter permease
RA 162,281 A→T 15.8% intergenic (‑315/+59) PP_0153 ← / ← scpC hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA 162,282 A→T 14.0% intergenic (‑316/+58) PP_0153 ← / ← scpC hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA 181,805 T→C 15.4% intergenic (+19/‑87) PP_r01 → / → PP_5SB 5S ribosomal RNA/5S ribosomal RNA
RA 181,811 C→T 14.5% intergenic (+25/‑81) PP_r01 → / → PP_5SB 5S ribosomal RNA/5S ribosomal RNA
RA 181,812 A→G 14.8% intergenic (+26/‑80) PP_r01 → / → PP_5SB 5S ribosomal RNA/5S ribosomal RNA
RA 181,818 G→A 16.6% intergenic (+32/‑74) PP_r01 → / → PP_5SB 5S ribosomal RNA/5S ribosomal RNA
RA 182,034 Δ1 bp 11.6% intergenic (+23/+42) PP_5SB → / ← PP_0160 5S ribosomal RNA/ferrioxamine receptor
RA 182,036:1 +C 11.9% intergenic (+25/+40) PP_5SB → / ← PP_0160 5S ribosomal RNA/ferrioxamine receptor
RA 195,559 C→A 24.7% T355T (ACC→ACA)  PP_0168 → putative surface adhesion protein
RA 195,634 C→T 45.5% T380T (ACC→ACT)  PP_0168 → putative surface adhesion protein
RA 196,306 T→C 16.7% N604N (AAT→AAC)  PP_0168 → putative surface adhesion protein
RA 196,327 A→C 21.7% T611T (ACA→ACC)  PP_0168 → putative surface adhesion protein
RA 196,351 C→G 18.7% T619T (ACC→ACG)  PP_0168 → putative surface adhesion protein
RA 196,390 T→C 21.8% D632D (GAT→GAC)  PP_0168 → putative surface adhesion protein
RA 197,089 T→C 7.7% N865N (AAT→AAC)  PP_0168 → putative surface adhesion protein
RA 197,551 C→G 8.5% T1019T (ACC→ACG)  PP_0168 → putative surface adhesion protein
RA 197,572 G→A 11.8% K1026K (AAG→AAA)  PP_0168 → putative surface adhesion protein
RA 197,590 T→C 14.5% D1032D (GAT→GAC)  PP_0168 → putative surface adhesion protein
RA 197,632 T→C 17.8% T1046T (ACT→ACC)  PP_0168 → putative surface adhesion protein
RA 205,613 Δ1 bp 8.9% coding (11119/26049 nt) PP_0168 → putative surface adhesion protein
RA 205,616 G→T 8.9% E3708* (GAA→TAA) ‡ PP_0168 → putative surface adhesion protein
RA 205,617 A→T 9.4% E3708V (GAA→GTA) ‡ PP_0168 → putative surface adhesion protein
RA 205,618 A→C 9.3% E3708D (GAA→GAC) ‡ PP_0168 → putative surface adhesion protein
RA 210,614 A→G 14.7% T5374A (ACC→GCC)  PP_0168 → putative surface adhesion protein
RA 211,621 G→C 11.5% V5709V (GTG→GTC)  PP_0168 → putative surface adhesion protein
RA 234,557 A→C 12.2% intergenic (‑65/‑84) PP_0182 ← / → PP_0183 hypothetical protein/glutathione S‑transferase
RA 239,116 C→G 12.5% A66G (GCC→GGC)  hemD → uroporphyrinogen‑III synthase
RA 239,119 C→G 12.5% A67G (GCC→GGC)  hemD → uroporphyrinogen‑III synthase
RA 243,622 T→A 11.7% K183N (AAA→AAT) ‡ fkl ← FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA 243,623 T→A 11.8% K183I (AAA→ATA) ‡ fkl ← FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA 263,957 A→T 14.0% E236D (GAA→GAT)  gabD‑I → succinate‑semialdehyde dehydrogenase
RA 263,958 A→T 14.0% I237F (ATC→TTC)  gabD‑I → succinate‑semialdehyde dehydrogenase
RA 280,792 C→A 16.0% P83P (CCG→CCT)  fliY ← cystine‑binding protein
RA 289,945 G→C 12.1% intergenic (+28/‑138) oprE → / → PP_0235 outer‑membrane porin E/peroxidase
RA 289,947 T→G 11.4% intergenic (+30/‑136) oprE → / → PP_0235 outer‑membrane porin E/peroxidase
RA 291,890 C→A 14.1% P91T (CCT→ACT)  ssuA → aliphatic sulfonatesABC transporter substrate‑binding protein
RA 321,742 T→C 9.6% intergenic (+27/+431) aguA → / ← PP_0267 agmatine deiminase/ferric siderophore receptor
RA 321,743 G→A 9.6% intergenic (+28/+430) aguA → / ← PP_0267 agmatine deiminase/ferric siderophore receptor
RA 322,135 G→A 18.4% intergenic (+420/+38) aguA → / ← PP_0267 agmatine deiminase/ferric siderophore receptor
RA 322,142 T→C 12.5% intergenic (+427/+31) aguA → / ← PP_0267 agmatine deiminase/ferric siderophore receptor
RA 322,878 C→T 8.5% L455L (CTG→CTA) ‡ PP_0267 ← ferric siderophore receptor
RA 322,879 A→G 8.5% L455P (CTG→CCG) ‡ PP_0267 ← ferric siderophore receptor
RA 325,250 G→A 10.0% L178L (CTG→CTA)  oprQ → outer‑membrane porin D
RA 352,583 C→G 21.2% A106A (GCC→GCG)  hisF → imidazole glycerol phosphate synthase subunit HisF
RA 362,694 C→T 9.3% L264L (CTG→CTA)  lcdH ← L‑carnitine dehydrogenase
RA 362,748 Δ1 bp 11.1% coding (738/966 nt) lcdH ← L‑carnitine dehydrogenase
RA 387,351 C→A 12.9% A163E (GCG→GAG)  glyA‑I → serine hydroxymethyltransferase
RA 416,124 G→C 9.8% D297H (GAC→CAC)  waaC → ADP‑heptose‑‑LPS heptosyltransferase
RA 431,353 C→T 19.3% G322S (GGC→AGC)  PP_0354 ← CBS domain‑containing protein
RA 431,358 A→G 18.2% L320P (CTG→CCG)  PP_0354 ← CBS domain‑containing protein
RA 431,365 C→T 18.2% V318I (GTT→ATT)  PP_0354 ← CBS domain‑containing protein
RA 432,996 A→T 8.8% intergenic (+18/+29) PP_0355 → / ← glcB two‑component system response regulator/malate synthase G
RA 432,997 A→T 8.9% intergenic (+19/+28) PP_0355 → / ← glcB two‑component system response regulator/malate synthase G
RA 432,998 A→T 8.9% intergenic (+20/+27) PP_0355 → / ← glcB two‑component system response regulator/malate synthase G
RA 459,902 C→T 14.3% intergenic (‑45/+34) pqqB ← / ← pqqA coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA 459,907 A→C 13.6% intergenic (‑50/+29) pqqB ← / ← pqqA coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA 459,908 G→T 14.0% intergenic (‑51/+28) pqqB ← / ← pqqA coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA 459,913 A→G 15.3% intergenic (‑56/+23) pqqB ← / ← pqqA coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA 464,323 G→C 9.8% H259Q (CAC→CAG) ‡ davB ← lysine 2‑monooxygenase
RA 464,324 T→A 9.8% H259L (CAC→CTC) ‡ davB ← lysine 2‑monooxygenase
RA 464,325 G→C 9.8% H259D (CAC→GAC) ‡ davB ← lysine 2‑monooxygenase
RA 471,069 T→C 23.3% intergenic (‑110/+18) PP_0386 ← / ← rpoD sensory box protein/RNA polymerase sigma 70 factor
RA 471,070 G→A 22.6% intergenic (‑111/+17) PP_0386 ← / ← rpoD sensory box protein/RNA polymerase sigma 70 factor
RA 503,828 Δ1 bp 15.4% intergenic (+28/‑123) PP_0414 → / → rpe polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA 503,834 A→T 14.8% intergenic (+34/‑117) PP_0414 → / → rpe polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA 503,835 A→T 14.3% intergenic (+35/‑116) PP_0414 → / → rpe polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA 503,840:1 +C 14.3% intergenic (+40/‑111) PP_0414 → / → rpe polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA 524,175 G→T 7.7% intergenic (+39/‑777) tyrS → / → PP_16SC tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA 524,176 G→A 7.7% intergenic (+40/‑776) tyrS → / → PP_16SC tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA 524,177 T→C 7.7% intergenic (+41/‑775) tyrS → / → PP_16SC tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA 524,178 A→C 7.7% intergenic (+42/‑774) tyrS → / → PP_16SC tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA 524,352 G→C 21.2% intergenic (+216/‑600) tyrS → / → PP_16SC tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA 524,355 G→C 21.2% intergenic (+219/‑597) tyrS → / → PP_16SC tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA 532,980 A→G 17.4% D81G (GAC→GGC)  tufA → elongation factor Tu‑A
RA 535,821 G→T 13.9% E85* (GAA→TAA) ‡ rplA → 50S ribosomal protein L1
RA 535,822 A→C 15.6% E85A (GAA→GCA) ‡ rplA → 50S ribosomal protein L1
RA 538,830 T→C 12.9% L402P (CTG→CCG)  rpoB → DNA‑directed RNA polymerase subunit beta
RA 541,440 A→G 12.2% Q1272R (CAG→CGG)  rpoB → DNA‑directed RNA polymerase subunit beta
RA 541,443 C→T 8.4% P1273L (CCG→CTG)  rpoB → DNA‑directed RNA polymerase subunit beta
RA 557,335 Δ1 bp 14.3% intergenic (+75/‑134) rpsN → / → rpsH 30S ribosomal protein S14/30S ribosomal protein S8
RA 557,339:1 +A 14.3% intergenic (+79/‑130) rpsN → / → rpsH 30S ribosomal protein S14/30S ribosomal protein S8
RA 566,891 G→A 10.5% L870L (CTG→TTG)  uvrA ← uvrABC excinuclease protein A
RA 566,892 T→C 10.0% Q869Q (CAA→CAG)  uvrA ← uvrABC excinuclease protein A
RA 571,620 G→A 14.7% intergenic (+43/+48) ssb → / ← PP_0486 single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA 571,621 T→C 14.7% intergenic (+44/+47) ssb → / ← PP_0486 single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA 591,082 G→A 8.4% R109H (CGC→CAC)  PP_0501 → NAD‑dependent epimerase/dehydratase family protein
RA 591,085 T→C 8.3% V110A (GTG→GCG)  PP_0501 → NAD‑dependent epimerase/dehydratase family protein
RA 605,124 G→A 13.2% R145H (CGC→CAC)  thiL → thiamin monophosphate kinase
RA 605,129 A→T 12.7% S147C (AGC→TGC)  thiL → thiamin monophosphate kinase
RA 605,134 T→C 13.5% G148G (GGT→GGC)  thiL → thiamin monophosphate kinase
RA 624,515 C→A 9.9% G132V (GGC→GTC)  PP_0537 ← transcriptional regulator
RA 644,143 G→C 9.4% R293G (CGC→GGC)  acoA ← acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA 644,144 G→C 9.5% A292A (GCC→GCG)  acoA ← acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA 648,290 A→C 11.9% intergenic (+56/+35) acoR → / ← accC acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA 648,292 A→T 12.0% intergenic (+58/+33) acoR → / ← accC acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA 648,294 G→T 11.1% intergenic (+60/+31) acoR → / ← accC acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA 677,954 C→T 54.5% G356D (GGC→GAC)  PP_0581 ← 3‑oxoacyl‑ACP reductase
RA 699,725 A→G 57.8% intergenic (+115/‑129) PP_t06 → / → PP_23SD tRNA‑Ala/23S ribosomal RNA
RA 735,613 A→G 11.4% intergenic (‑36/+97) PP_0627 ← / ← PP_0628 hypothetical protein/hypothetical protein
RA 735,620 A→G 11.1% intergenic (‑43/+90) PP_0627 ← / ← PP_0628 hypothetical protein/hypothetical protein
RA 735,621 C→T 11.1% intergenic (‑44/+89) PP_0627 ← / ← PP_0628 hypothetical protein/hypothetical protein
RA 735,628 C→T 10.9% intergenic (‑51/+82) PP_0627 ← / ← PP_0628 hypothetical protein/hypothetical protein
RA 740,479 C→G 11.5% G51R (GGG→CGG)  pilC ← type IV fimbrial assembly protein PilC
RA 743,433 G→A 15.7% intergenic (+109/+165) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,435 A→C 15.4% intergenic (+111/+163) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,442 T→G 15.3% intergenic (+118/+156) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,443 T→A 15.7% intergenic (+119/+155) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,444 C→A 15.7% intergenic (+120/+154) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,451 G→T 16.9% intergenic (+127/+147) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,453 T→C 11.3% intergenic (+129/+145) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,463 A→G 13.3% intergenic (+139/+135) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,628 A→G 11.1% I237I (ATT→ATC)  PP_0636 ← cold shock DNA‑binding domain‑containing protein
RA 780,559 A→C 15.1% intergenic (‑86/+36) PP_0670 ← / ← glyA‑II bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA 780,561 T→A 15.1% intergenic (‑88/+34) PP_0670 ← / ← glyA‑II bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA 780,563 G→T 15.6% intergenic (‑90/+32) PP_0670 ← / ← glyA‑II bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA 897,774 C→G 10.3% I401M (ATC→ATG)  PP_0779 → methyl‑accepting chemotaxis transducer/sensory box protein
RA 906,835 A→T 11.2% K92* (AAG→TAG) ‡ PP_0790 → inner membrane protein AmpE
RA 906,836 A→T 10.4% K92M (AAG→ATG) ‡ PP_0790 → inner membrane protein AmpE
RA 919,675 G→C 10.2% intergenic (‑143/+48) PP_5458 ← / ← PP_0800 hypothetical protein/hypothetical protein
RA 953,224 T→C 8.7% A10A (GCT→GCC)  cyoC → cytochrome bo terminal oxidase subunit III
RA 953,232 A→G 8.9% H13R (CAC→CGC) ‡ cyoC → cytochrome bo terminal oxidase subunit III
RA 953,233 C→T 8.9% H13H (CAC→CAT) ‡ cyoC → cytochrome bo terminal oxidase subunit III
RA 953,241 G→A 9.2% G16E (GGG→GAG)  cyoC → cytochrome bo terminal oxidase subunit III
RA 972,118 T→A 7.7% L136Q (CTG→CAG)  secD → protein translocase subunit SecD
RA 972,121 T→A 7.7% L137Q (CTG→CAG)  secD → protein translocase subunit SecD
RA 975,290 A→T 13.3% intergenic (+136/+33) ycfJ → / ← suhB flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA 975,291 A→T 14.0% intergenic (+137/+32) ycfJ → / ← suhB flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA 1,011,482 T→A 14.2% intergenic (‑417/‑110) PP_0871 ← / → prfC glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3
RA 1,011,483 T→A 14.3% intergenic (‑418/‑109) PP_0871 ← / → prfC glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3
RA 1,013,231 A→T 18.0% intergenic (+56/+75) prfC → / ← potF‑I peptide chain release factor 3/putrescine‑binding protein
RA 1,025,285 A→T 6.8% intergenic (‑136/+93) opdP ← / ← dppA‑II glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
RA 1,025,286 A→T 6.5% intergenic (‑137/+92) opdP ← / ← dppA‑II glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
RA 1,031,395 G→C 19.2% S33T (AGC→ACC)  regA → photosynthetic apparatus regulatory protein RegA
RA 1,041,942 A→C 10.5% E141A (GAG→GCG)  colR → two‑component system response regulator
RA 1,041,945 T→G 13.6% V142G (GTT→GGT)  colR → two‑component system response regulator
RA 1,058,260 Δ1 bp 13.9% intergenic (‑186/+34) PP_0914 ← / ← sodB GGDEF domain‑containing protein/superoxide dismutase
RA 1,058,264:1 +T 13.5% intergenic (‑190/+30) PP_0914 ← / ← sodB GGDEF domain‑containing protein/superoxide dismutase
RA 1,060,105:1 +T 9.1% coding (248/891 nt) iciA → chromosome initiation inhibitor
RA 1,070,265 G→C 20.0% intergenic (+62/+82) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA 1,070,268 G→C 22.5% intergenic (+65/+79) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA 1,123,943 T→A 16.2% intergenic (‑138/+83) PP_mr13 ← / ← gcvT‑I cspA regulatory region/aminomethyltransferase
RA 1,123,948 T→A 16.2% intergenic (‑143/+78) PP_mr13 ← / ← gcvT‑I cspA regulatory region/aminomethyltransferase
RA 1,148,799 G→T 18.0% T151K (ACG→AAG)  PP_1007 ← transmembrane sensor
RA 1,148,802 A→C 17.3% L150R (CTT→CGT)  PP_1007 ← transmembrane sensor
RA 1,153,793 C→T 8.2% A230V (GCG→GTG)  glk → glucokinase
RA 1,164,645 T→G 55.9% T256P (ACC→CCC)  hexR ← DNA‑binding transcriptional regulator
RA 1,189,041 A→G 11.0% intergenic (+25/+17) PP_1038 → / ← tatC‑I hypothetical protein/Sec‑independent protein translocase protein
RA 1,189,042 C→T 12.4% intergenic (+26/+16) PP_1038 → / ← tatC‑I hypothetical protein/Sec‑independent protein translocase protein
RA 1,212,017 C→T 8.2% Q152Q (CAG→CAA)  PP_1060 ← glutamate synthase large subunit
RA 1,221,043 T→G 11.9% D90A (GAC→GCC)  dctD‑II ← C4‑dicarboxylate transport transcriptional regulator
RA 1,221,052 C→A 15.4% G87V (GGC→GTC)  dctD‑II ← C4‑dicarboxylate transport transcriptional regulator
RA 1,226,713 T→A 17.7% intergenic (‑217/‑114) gltI ← / → PP_1072 glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA 1,226,716 T→A 14.3% intergenic (‑220/‑111) gltI ← / → PP_1072 glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA 1,233,640 G→A 11.8% R17R (CGC→CGT)  glpR ← DNA‑binding transcriptional repressor GlpR
RA 1,235,338 T→C 15.7% intergenic (‑47/+5) glpK ← / ← glpF glycerol kinase/aquaglyceroporin
RA 1,241,533 A→G 28.6% intergenic (+19/‑73) PP_1080 → / → grxD molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA 1,241,535 G→C 30.1% intergenic (+21/‑71) PP_1080 → / → grxD molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA 1,241,537 C→T 32.2% intergenic (+23/‑69) PP_1080 → / → grxD molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA 1,291,468 A→C 7.9% K85Q (AAG→CAG)  estC → carboxylesterase
RA 1,295,019 Δ1 bp 18.7% intergenic (+29/+41) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,295,024 T→A 20.7% intergenic (+34/+36) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,295,027 T→A 20.7% intergenic (+37/+33) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,295,031:1 +T 20.7% intergenic (+41/+29) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,327,127 C→T 50.1% intergenic (+97/‑196) PP_16SE → / → PP_23SE 16S ribosomal RNA/23S ribosomal RNA
RA 1,376,327 A→T 21.0% intergenic (+30/+19) kup → / ← PP_1201 potassium transport system protein Kup/hypothetical protein
RA 1,376,328 G→C 21.0% intergenic (+31/+18) kup → / ← PP_1201 potassium transport system protein Kup/hypothetical protein
RA 1,376,329 A→T 21.0% intergenic (+32/+17) kup → / ← PP_1201 potassium transport system protein Kup/hypothetical protein
RA 1,388,043 G→T 12.5% G151G (GGC→GGA)  PP_1209 ← cold‑shock protein
RA 1,388,050 T→A 13.3% D149V (GAC→GTC)  PP_1209 ← cold‑shock protein
RA 1,388,057 A→C 9.5% S147A (TCC→GCC)  PP_1209 ← cold‑shock protein
RA 1,403,596 G→A 25.0% intergenic (‑56/+25) PP_1227 ← / ← PP_1228 membrane protein/methyl‑accepting chemotaxis transducer
RA 1,403,597 T→C 25.0% intergenic (‑57/+24) PP_1227 ← / ← PP_1228 membrane protein/methyl‑accepting chemotaxis transducer
RA 1,434,266 Δ1 bp 8.0% coding (125/1248 nt) PP_1255 ← cis‑4‑hydroxy‑D‑proline oxidase
RA 1,434,270:1 +T 8.5% coding (121/1248 nt) PP_1255 ← cis‑4‑hydroxy‑D‑proline oxidase
RA 1,435,225 A→T 14.8% L249Q (CTG→CAG)  PP_1256 ← alpha‑ketoglutarate semialdehyde dehydrogenase
RA 1,449,467 C→T 8.5% R74R (CGG→CGA)  yhaV ← toxin antitoxin system SohB(PrlF)‑YhaV toxin endoribonuclease
RA 1,497,001 T→C 12.1% Q95R (CAA→CGA)  PP_1309 ← hypothetical protein
RA 1,526,613 G→T 13.6% C253F (TGC→TTC)  ddlB → D‑alanine‑‑D‑alanine ligase B
RA 1,526,622 T→A 11.6% I256N (ATT→AAT)  ddlB → D‑alanine‑‑D‑alanine ligase B
RA 1,528,340 C→T 22.3% G213G (GGC→GGT)  ftsA → cell division protein FtsA
RA 1,528,342 G→C 22.4% G214A (GGC→GCC)  ftsA → cell division protein FtsA
RA 1,528,344 A→G 23.7% T215A (ACC→GCC)  ftsA → cell division protein FtsA
RA 1,544,531 C→A 24.9% intergenic (+48/+66) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,544,534 G→C 19.5% intergenic (+51/+63) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,544,536 C→G 20.1% intergenic (+53/+61) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,544,541 C→G 22.7% intergenic (+58/+56) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,544,543 G→C 19.9% intergenic (+60/+54) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,544,546 T→G 18.1% intergenic (+63/+51) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,551,324 G→T 20.0% intergenic (+41/+85) groL → / ← pykA chaperonin GroEL/pyruvate kinase II
RA 1,551,327 A→C 20.0% intergenic (+44/+82) groL → / ← pykA chaperonin GroEL/pyruvate kinase II
RA 1,569,200 G→A 12.1% intergenic (+295/‑32) pcaK → / → pcaF‑I 4‑hydroxybenzoate transporter/beta‑ketoadipyl‑CoA thiolase
RA 1,592,024 C→A 16.7% intergenic (‑89/‑114) PP_1395 ← / → PP_1396 AraC family transcriptional regulator/hypothetical protein
RA 1,592,029 T→G 16.8% intergenic (‑94/‑109) PP_1395 ← / → PP_1396 AraC family transcriptional regulator/hypothetical protein
RA 1,606,449 A→T 17.6% intergenic (‑157/+54) PP_1407 ← / ← PP_t64 sulfate transporter/tRNA‑Gly
RA 1,606,450 A→T 17.6% intergenic (‑158/+53) PP_1407 ← / ← PP_t64 sulfate transporter/tRNA‑Gly
RA 1,642,313 G→C 13.8% intergenic (‑99/+53) PP_1442 ← / ← lon‑I hypothetical protein/DNA‑binding ATP‑dependent protease
RA 1,642,327 G→C 11.4% intergenic (‑113/+39) PP_1442 ← / ← lon‑I hypothetical protein/DNA‑binding ATP‑dependent protease
RA 1,647,969 G→A 100% Y265Y (TAC→TAT)  oprB‑II ← carbohydrate‑selective porin
RA 1,649,110 G→A 14.8% I664I (ATC→ATT)  PP_1446 ← TonB‑dependent receptor
RA 1,683,290 C→G 22.2% intergenic (+57/‑174) recJ → / → PP_1478 ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA 1,683,293 C→G 22.3% intergenic (+60/‑171) recJ → / → PP_1478 ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA 1,691,814 T→C 22.9% intergenic (+39/‑132) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,691,815 C→G 23.4% intergenic (+40/‑131) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,691,825 C→A 28.2% intergenic (+50/‑121) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,691,828 T→G 24.6% intergenic (+53/‑118) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,691,838 C→G 17.7% intergenic (+63/‑108) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,691,839 G→A 17.6% intergenic (+64/‑107) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,703,294:1 +T 20.5% intergenic (+101/‑66) lysS → / → PP_1497 lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA 1,707,269 G→C 17.2% intergenic (+45/+97) PP_1501 → / ← PP_1502 hypothetical protein/OmpA family protein
RA 1,707,272 G→C 17.3% intergenic (+48/+94) PP_1501 → / ← PP_1502 hypothetical protein/OmpA family protein
RA 1,718,111 G→C 11.6% L256F (TTG→TTC)  rsmJ → ribosomal RNA small subunit methyltransferase J
RA 1,745,546 T→G 11.4% E86A (GAA→GCA) ‡ PP_1543 ← hypothetical protein
RA 1,745,547 C→A 9.3% E86* (GAA→TAA) ‡ PP_1543 ← hypothetical protein
RA 1,777,730 A→G 16.0% L57P (CTG→CCG)  PP_1585 ← antidote protein
RA 1,782,577 C→A 9.4% Q514H (CAG→CAT) ‡ glnD ← uridylyltransferase
RA 1,782,578 T→G 9.1% Q514P (CAG→CCG) ‡ glnD ← uridylyltransferase
RA 1,786,986 A→G 12.9% T259A (ACC→GCC)  tsf → elongation factor Ts
RA 1,786,994 C→T 16.1% F261F (TTC→TTT)  tsf → elongation factor Ts
RA 1,786,995 A→G 16.1% K262E (AAA→GAA)  tsf → elongation factor Ts
RA 1,787,003 C→T 13.3% G264G (GGC→GGT)  tsf → elongation factor Ts
RA 1,813,442 T→C 16.2% G293G (GGT→GGC)  frmA → glutathione‑dependent formaldehyde dehydrogenase
RA 1,842,635 C→A 16.7% R734L (CGC→CTC)  gacS ← sensor protein GacS
MC JC 1,842,677 Δ53 bp 100% coding (2107‑2159/2754 nt) gacS ← sensor protein GacS
RA 1,851,958 C→G 100% H334Q (CAC→CAG)  relA → ATP:GTP 3'‑pyrophosphotransferase
RA 1,859,743 G→A 10.5% R192C (CGC→TGC)  PP_1663 ← hypothetical protein
RA 1,873,937 G→C 12.5% G69A (GGC→GCC)  cobU → nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
RA 1,915,868 A→T 13.9% intergenic (+254/‑35) fklB‑II → / → PP_1715 FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA 1,921,591 T→A 12.5% intergenic (+24/+37) PP_1720 → / ← PP_1721 alcohol dehydrogenase/phosphoserine phosphatase
RA 1,921,592 T→A 12.5% intergenic (+25/+36) PP_1720 → / ← PP_1721 alcohol dehydrogenase/phosphoserine phosphatase
RA 1,967,689 C→G 16.7% G115A (GGC→GCC) ‡ yciK ← putative oxidoreductase
RA 1,967,690 C→G 20.0% G115R (GGC→CGC) ‡ yciK ← putative oxidoreductase
RA 1,989,188 G→C 10.7% G132A (GGC→GCC)  PP_1780 → mannosyltransferase
RA 2,019,126 C→A 9.1% L120M (CTG→ATG) ‡ PP_1797 → HlyD family secretion protein
RA 2,019,127 T→G 9.1% L120R (CTG→CGG) ‡ PP_1797 → HlyD family secretion protein
RA 2,031,417 C→A 16.1% intergenic (+47/+28) PP_1806 → / ← kdsA‑II arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA 2,092,423 G→A 18.3% intergenic (+26/+65) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,425 T→C 17.6% intergenic (+28/+63) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,428 G→A 17.5% intergenic (+31/+60) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,430 T→C 17.7% intergenic (+33/+58) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,101,429 G→C 14.3% T135T (ACG→ACC)  msrC → free methionine‑(R)‑sulfoxide reductase
RA 2,173,821 A→C 11.5% A83A (GCT→GCG) ‡ PP_1926 ← phosphotyrosine‑protein phosphatase
RA 2,173,822 G→T 11.4% A83D (GCT→GAT) ‡ PP_1926 ← phosphotyrosine‑protein phosphatase
RA 2,246,284 C→T 16.7% intergenic (+30/+61) ibpA → / ← PP_1983 small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA 2,246,285 A→G 17.1% intergenic (+31/+60) ibpA → / ← PP_1983 small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA 2,260,786 G→A 11.8% G444D (GGC→GAC)  fimV → motility protein FimV
RA 2,260,789 G→C 11.7% G445A (GGC→GCC)  fimV → motility protein FimV
RA 2,260,792 T→C 11.1% V446A (GTC→GCC)  fimV → motility protein FimV
RA 2,273,765 A→T 12.5% H215Q (CAT→CAA)  PP_2004 ← AraC family transcriptional regulator
RA 2,282,773 T→C 20.0% intergenic (‑122/+107) PP_2010 ← / ← PP_2011 cytochrome b561/hypothetical protein
RA 2,282,780 T→G 20.0% intergenic (‑129/+100) PP_2010 ← / ← PP_2011 cytochrome b561/hypothetical protein
RA 2,282,813 T→G 46.0% intergenic (‑162/+67) PP_2010 ← / ← PP_2011 cytochrome b561/hypothetical protein
RA 2,282,817 G→C 36.2% intergenic (‑166/+63) PP_2010 ← / ← PP_2011 cytochrome b561/hypothetical protein
RA 2,282,818 G→C 36.4% intergenic (‑167/+62) PP_2010 ← / ← PP_2011 cytochrome b561/hypothetical protein
RA 2,282,822 C→A 33.8% intergenic (‑171/+58) PP_2010 ← / ← PP_2011 cytochrome b561/hypothetical protein
RA 2,318,704 A→G 15.1% A301A (GCA→GCG)  PP_2039 → acyl‑CoA dehydrogenase
RA 2,318,705 C→T 15.2% R302C (CGC→TGC)  PP_2039 → acyl‑CoA dehydrogenase
RA 2,371,656 G→T 11.8% A1477A (GCG→GCT)  gdhB → NAD‑specific glutamate dehydrogenase
RA 2,385,836 Δ1 bp 11.8% coding (85/576 nt) PP_2093 ← two‑component system response regulator NasT
RA 2,385,840:1 +A 11.4% coding (81/576 nt) PP_2093 ← two‑component system response regulator NasT
RA 2,410,403 A→G 8.5% L363P (CTG→CCG)  acnA‑I ← aconitate hydratase
RA 2,420,641 Δ1 bp 13.5% intergenic (+81/+26) ctpH → / ← PP_t62 methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA 2,420,645:1 +T 13.5% intergenic (+85/+22) ctpH → / ← PP_t62 methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA 2,444,458 A→C 13.9% *159G (TGA→GGA)  sulA ← cell division inhibitor SulA
RA 2,444,462 G→T 14.7% L157L (CTC→CTA) ‡ sulA ← cell division inhibitor SulA
RA 2,444,463 A→C 14.7% L157R (CTC→CGC) ‡ sulA ← cell division inhibitor SulA
RA 2,444,467 G→T 16.1% R156S (CGC→AGC)  sulA ← cell division inhibitor SulA
RA 2,650,203 A→T 26.3% intergenic (+99/+35) PP_2320 → / ← oprI hypothetical protein/major outer membrane lipoprotein
RA 2,650,204 A→T 26.3% intergenic (+100/+34) PP_2320 → / ← oprI hypothetical protein/major outer membrane lipoprotein
RA 2,651,319 G→C 12.1% intergenic (+41/+29) PP_2323 → / ← aroF‑I hypothetical protein/tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
RA 2,688,176 G→T 12.4% L22M (CTG→ATG)  PP_2355 ← two‑component system response regulator
RA 2,700,087 G→A 13.8% T156I (ACC→ATC)  fsr‑II ← fosmidomycin efflux system
RA 2,749,880 T→C 20.0% H218R (CAT→CGT)  PP_2406 ← quinate/shikimate dehydrogenase
RA 2,777,043 C→G 8.5% A169P (GCA→CCA)  PP_2429 ← membrane protein
RA 2,777,050 C→G 8.1% W166C (TGG→TGC)  PP_2429 ← membrane protein
RA 2,820,638:1 +T 12.9% intergenic (+396/+116) PP_2473 → / ← PP_2474 hypothetical protein/glutathione S‑transferase family protein
RA 2,820,642 Δ1 bp 12.9% intergenic (+400/+112) PP_2473 → / ← PP_2474 hypothetical protein/glutathione S‑transferase family protein
RA 2,951,377 G→C 26.9% intergenic (‑113/+48) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 2,951,384 A→C 23.1% intergenic (‑120/+41) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 2,951,385 G→T 23.1% intergenic (‑121/+40) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 2,991,844 A→G 16.0% M90T (ATG→ACG)  hcpC‑I ← hemolysin‑coregulated protein
RA 3,002,881 Δ1 bp 15.4% coding (879/1464 nt) PP_2626 → hypothetical protein
RA 3,002,883 T→G 20.0% V294G (GTT→GGT)  PP_2626 → hypothetical protein
RA 3,002,885 G→C 19.1% D295H (GAC→CAC) ‡ PP_2626 → hypothetical protein
RA 3,002,887 C→A 19.0% D295E (GAC→GAA) ‡ PP_2626 → hypothetical protein
RA 3,021,534 A→G 12.5% N677D (AAC→GAC)  PP_2638 → cellulose synthase operon protein C
RA 3,048,647 G→T 23.1% intergenic (+59/‑237) PP_2661 → / → PP_2662 hypothetical protein/hypothetical protein
RA 3,048,648 A→C 22.8% intergenic (+60/‑236) PP_2661 → / → PP_2662 hypothetical protein/hypothetical protein
RA 3,048,662 C→T 18.1% intergenic (+74/‑222) PP_2661 → / → PP_2662 hypothetical protein/hypothetical protein
RA 3,104,342 T→A 17.2% L276Q (CTG→CAG)  PP_2714 → sensor histidine kinase
RA 3,120,178 C→A 13.7% E184* (GAG→TAG)  PP_2736 ← hypothetical protein
RA 3,141,530 A→C 13.5% D135A (GAC→GCC)  PP_2757 → sugar‑binding protein
RA 3,141,536 Δ1 bp 13.5% coding (410/972 nt) PP_2757 → sugar‑binding protein
RA 3,141,550:1 +A 14.7% coding (424/972 nt) PP_2757 → sugar‑binding protein
RA 3,162,567 T→C 19.3% intergenic (+471/‑109) PP_2776 → / → PP_2777 homocysteine S‑methyltransferase family protein/acyl carrier protein
RA 3,162,570 G→A 18.5% intergenic (+474/‑106) PP_2776 → / → PP_2777 homocysteine S‑methyltransferase family protein/acyl carrier protein
RA 3,166,099 G→C 14.6% G163A (GGC→GCC)  PP_2780 → 3‑oxoacyl‑ACP synthase
RA 3,171,552 C→T 22.2% A172V (GCG→GTG)  PP_2783 → 3‑oxoacyl‑ACP reductase
RA 3,189,636 G→T 11.8% L353M (CTG→ATG)  PP_2799 ← class III aminotransferase
RA 3,189,641 T→A 11.4% Q351L (CAG→CTG)  PP_2799 ← class III aminotransferase
RA 3,189,646 A→C 11.0% H349Q (CAT→CAG)  PP_2799 ← class III aminotransferase
RA 3,211,931 T→G 13.3% S309A (TCA→GCA) ‡ PP_2815 → hypothetical protein
RA 3,211,932 C→A 13.4% S309* (TCA→TAA) ‡ PP_2815 → hypothetical protein
RA 3,212,319 T→C 18.5% *189W (TGA→TGG) ‡ PP_2816 ← transcriptional regulator NfxB
RA 3,212,321 A→T 13.8% *189R (TGA→AGA) ‡ PP_2816 ← transcriptional regulator NfxB
RA 3,212,324 A→T 14.5% Y188N (TAT→AAT)  PP_2816 ← transcriptional regulator NfxB
RA 3,212,326 G→A 15.4% P187L (CCC→CTC)  PP_2816 ← transcriptional regulator NfxB
RA 3,218,704:1 +C 16.0% intergenic (+44/+39) oprJ → / ← nfxB outer membrane protein OprJ/HTH‑type transcriptional regulator NfxB
RA 3,218,711 Δ1 bp 14.8% intergenic (+51/+32) oprJ → / ← nfxB outer membrane protein OprJ/HTH‑type transcriptional regulator NfxB
RA 3,253,091 C→G 18.2% G132R (GGC→CGC)  PP_2851 ← hypothetical protein
RA 3,253,096 C→G 18.2% R130P (CGC→CCC)  PP_2851 ← hypothetical protein
RA 3,260,381 T→A 12.3% Q161L (CAG→CTG)  PP_2857 ← hypothetical protein
RA 3,263,396:1 +A 17.7% coding (1194/1635 nt) PP_2861 ← methyl‑accepting chemotaxis transducer
RA 3,263,401 Δ1 bp 17.2% coding (1189/1635 nt) PP_2861 ← methyl‑accepting chemotaxis transducer
RA 3,295,567 C→A 13.9% V54V (GTG→GTT) ‡ PP_2895 ← hypothetical protein
RA 3,295,569 C→G 12.5% V54L (GTG→CTG) ‡ PP_2895 ← hypothetical protein
RA 3,295,570 Δ1 bp 12.5% coding (159/645 nt) PP_2895 ← hypothetical protein
RA 3,295,573 C→A 12.1% K52N (AAG→AAT) ‡ PP_2895 ← hypothetical protein
RA 3,295,574 T→G 11.8% K52T (AAG→ACG) ‡ PP_2895 ← hypothetical protein
RA 3,295,576:1 +G 11.8% coding (153/645 nt) PP_2895 ← hypothetical protein
RA 3,310,150 C→A 16.0% L408M (CTG→ATG) ‡ lhgO → L‑2‑hydroxyglutarate oxidase
RA 3,310,151 T→G 16.1% L408R (CTG→CGG) ‡ lhgO → L‑2‑hydroxyglutarate oxidase
RA 3,315,627 A→C 21.7% L192R (CTC→CGC)  PP_2915 ← membrane protein
RA 3,315,630 G→T 20.6% A191E (GCG→GAG)  PP_2915 ← membrane protein
RA 3,317,256 C→G 13.0% P608P (CCG→CCC)  treSA ← trehalose synthase A
RA 3,326,898 G→T 12.9% V536V (GTG→GTT)  mqo‑III → malate:quinone oxidoreductase
RA 3,337,837:1 +T 9.8% coding (998/1047 nt) PP_2934 → hypothetical protein
RA 3,344,389 C→G 26.0% Q261H (CAG→CAC)  PP_2941 ← hypothetical protein
RA 3,380,579 A→G 10.8% N70D (AAC→GAC)  tnpT‑I → cointegrate resolution protein T
RA 3,380,583 T→A 11.4% L71Q (CTG→CAG)  tnpT‑I → cointegrate resolution protein T
RA 3,380,587 C→T 11.8% V72V (GTC→GTT)  tnpT‑I → cointegrate resolution protein T
RA 3,431,901 G→T 15.1% E167D (GAG→GAT)  PP_3047 → hypothetical protein
RA 3,435,965 G→A 8.9% Q278Q (CAG→CAA)  gpJ → baseplate/tail fiber protein
RA 3,435,966 T→C 8.9% L279L (TTG→CTG)  gpJ → baseplate/tail fiber protein
RA 3,512,276 C→T 14.8% R301C (CGC→TGC)  PP_3108 → rhs family protein
RA 3,624,187 G→C 20.5% intergenic (‑92/+81) PP_3194 ← / ← PP_3195 hypothetical protein/hypothetical protein
RA 3,628,125 C→G 23.3% intergenic (+11/‑129) PP_3198 → / → PP_3199 2Fe‑2S ferredoxin/monooxygenase
RA 3,645,945 A→T 15.5% L32Q (CTG→CAG)  PP_3212 ← Rieske 2Fe‑2S family protein
RA 3,645,948 A→T 15.5% L31Q (CTG→CAG)  PP_3212 ← Rieske 2Fe‑2S family protein
RA 3,688,221 C→T 10.3% L99L (CTG→TTG)  PP_3253 → carboxylate‑amine ligase
RA 3,692,662 T→A 16.7% Q336L (CAG→CTG)  PP_3259 ← acyl‑CoA dehydrogenase‑related protein
RA 3,760,027 T→C 12.1% L206P (CTG→CCG) ‡ folEB → GTP cyclohydrolase I
RA 3,760,028 G→A 12.5% L206L (CTG→CTA) ‡ folEB → GTP cyclohydrolase I
RA 3,793,935 A→T 18.2% L211M (TTG→ATG)  PP_3355 ← beta‑ketothiolase
RA 3,793,940 A→T 18.2% I209N (ATT→AAT)  PP_3355 ← beta‑ketothiolase
RA 3,812,702 A→G 10.5% D328G (GAC→GGC)  PP_3368 → MFS transporter
RA 3,812,705 T→A 10.7% I329N (ATT→AAT)  PP_3368 → MFS transporter
RA 3,812,708 C→T 10.7% A330V (GCC→GTC)  PP_3368 → MFS transporter
RA 3,848,513 A→T 10.4% P78P (CCA→CCT)  PP_3397 → hypothetical protein
RA 3,853,162 T→A 21.9% I169N (ATT→AAT)  alkB → alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
RA 3,871,650 G→C 8.7% L259V (CTG→GTG)  PP_3420 ← sensor histidine kinase
RA 3,871,651 G→C 8.7% H258Q (CAC→CAG)  PP_3420 ← sensor histidine kinase
RA 3,871,727 G→C 9.3% A233G (GCC→GGC)  PP_3420 ← sensor histidine kinase
RA 3,881,873 A→T 17.6% Q163L (CAG→CTG)  oprN → multidrug RND transporter outer membrane protein OprN
RA 3,912,174 A→G 12.5% E159G (GAG→GGG)  PP_3452 → GGDEF domain‑containing protein
RA 3,912,177 C→T 12.5% P160L (CCC→CTC)  PP_3452 → GGDEF domain‑containing protein
RA 3,966,806 C→A 14.8% L319M (CTG→ATG) ‡ ydcP → peptidase
RA 3,966,807 T→G 16.1% L319R (CTG→CGG) ‡ ydcP → peptidase
RA 3,996,941 G→T 18.2% P89H (CCT→CAT)  PP_3525 ← hypothetical protein
RA 3,996,944 A→C 19.1% M88R (ATG→AGG)  PP_3525 ← hypothetical protein
RA 4,020,510 T→A 11.5% L393M (TTG→ATG) ‡ PP_3546 → two‑component system sensor histidine kinase/response regulator
RA 4,020,511 T→A 12.2% L393* (TTG→TAG) ‡ PP_3546 → two‑component system sensor histidine kinase/response regulator
RA 4,022,350 G→C 13.8% intergenic (‑1/+667) PP_3547 ← / ← emrB NAD(P)‑binding oxidoreductase/multidrug transporter permease
RA 4,022,351 G→C 13.8% intergenic (‑2/+666) PP_3547 ← / ← emrB NAD(P)‑binding oxidoreductase/multidrug transporter permease
RA 4,049,951 A→G 22.3% intergenic (+40/‑61) quiA → / → oprB‑III quinate dehydrogenase/carbohydrate‑selective porin
RA 4,049,954 C→G 18.2% intergenic (+43/‑58) quiA → / → oprB‑III quinate dehydrogenase/carbohydrate‑selective porin
RA 4,049,957 C→T 18.2% intergenic (+46/‑55) quiA → / → oprB‑III quinate dehydrogenase/carbohydrate‑selective porin
RA 4,072,512 G→C 8.9% A332G (GCG→GGG)  mdtA ← multidrug transporter membrane fusion protein
RA 4,072,519 G→C 8.9% P330A (CCG→GCG)  mdtA ← multidrug transporter membrane fusion protein
RA 4,090,100 C→G 13.5% S36C (TCC→TGC) ‡ gudP → glucarate transporter
RA 4,090,101 C→G 13.5% S36S (TCC→TCG) ‡ gudP → glucarate transporter
RA 4,120,891 G→A 10.3% A421A (GCG→GCA)  adhB → alcohol dehydrogenase cytochrome c subunit
RA 4,150,079 A→T 10.5% intergenic (+34/‑363) PP_3654 → / → PP_3655 leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
RA 4,163,542 T→C 16.0% intergenic (‑37/‑145) pssA ← / → PP_3665 CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA 4,163,546 T→G 18.2% intergenic (‑41/‑141) pssA ← / → PP_3665 CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA 4,163,549 C→A 17.9% intergenic (‑44/‑138) pssA ← / → PP_3665 CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA 4,163,553 G→A 18.5% intergenic (‑48/‑134) pssA ← / → PP_3665 CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA 4,165,663 A→G 12.1% R161R (CGT→CGC)  PP_3666 ← MHS family metabolite MFS transporter
RA 4,165,671 C→T 18.9% G159R (GGG→AGG)  PP_3666 ← MHS family metabolite MFS transporter
RA 4,165,672 A→G 20.0% P158P (CCT→CCC)  PP_3666 ← MHS family metabolite MFS transporter
RA 4,221,231 G→T 21.0% intergenic (+46/+216) PP_3699 → / ← PP_3700 hypothetical protein/chromosome partitioning ATPase
RA 4,221,233 A→T 20.8% intergenic (+48/+214) PP_3699 → / ← PP_3700 hypothetical protein/chromosome partitioning ATPase
RA 4,221,235 A→C 21.8% intergenic (+50/+212) PP_3699 → / ← PP_3700 hypothetical protein/chromosome partitioning ATPase
RA 4,224,539 G→A 14.7% intergenic (‑607/+214) PP_3703 ← / ← PP_3704 hypothetical protein/hypothetical protein
RA 4,224,545 C→A 14.3% intergenic (‑613/+208) PP_3703 ← / ← PP_3704 hypothetical protein/hypothetical protein
RA 4,224,546 T→G 16.1% intergenic (‑614/+207) PP_3703 ← / ← PP_3704 hypothetical protein/hypothetical protein
RA 4,281,403 G→A 14.9% T22I (ACC→ATC)  PP_3751 ← cyanate transporter
RA 4,295,419 A→G 23.1% intergenic (‑3/‑347) opdN ← / → PP_3765 outer‑membrane porin D/H‑NS family protein MvaT
RA 4,297,638 G→A 10.2% R154C (CGC→TGC)  PP_3768 ← shikimate 5‑dehydrogenase
RA 4,297,639 T→C 10.3% A153A (GCA→GCG)  PP_3768 ← shikimate 5‑dehydrogenase
RA 4,301,102 A→G 10.8% T75A (ACG→GCG)  PP_3774 → hypothetical protein
RA 4,301,115 C→T 11.6% A79V (GCC→GTC)  PP_3774 → hypothetical protein
RA 4,311,358 T→A 11.3% F12I (TTT→ATT) ‡ PP_3784 → hypothetical protein
RA 4,311,359 T→A 11.8% F12Y (TTT→TAT) ‡ PP_3784 → hypothetical protein
RA 4,339,035 T→A 10.3% L33Q (CTG→CAG)  ribAB‑II → 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 4,339,038 T→A 10.4% L34Q (CTG→CAG)  ribAB‑II → 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 4,348,749 A→G 55.0% intergenic (‑70/+404) PP_3820 ← / ← galU group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA 4,353,340 C→G 29.6% P141R (CCG→CGG)  yrpB → 2‑nitropropane dioxygenase
RA 4,395,564 T→C 12.9% D85G (GAC→GGC)  PP_3871 ← hypothetical protein
RA 4,395,567 G→C 13.4% A84G (GCC→GGC)  PP_3871 ← hypothetical protein
RA 4,395,570 G→A 13.3% A83V (GCC→GTC)  PP_3871 ← hypothetical protein
RA 4,445,294 C→G 24.8% G117A (GGG→GCG) ‡ nicE ← maleate isomerase
RA 4,445,295 C→G 23.5% G117R (GGG→CGG) ‡ nicE ← maleate isomerase
RA 4,479,750 C→A 11.8% Q353K (CAA→AAA)  ybdR → Zn‑dependent oxidoreductase
RA 4,512,559 A→G 16.6% V826A (GTG→GCG)  ftsK ← DNA translocase FtsK
RA 4,522,021 G→T 12.6% intergenic (‑240/‑175) icd ← / → idh NADP(+)‑specific isocitrate dehydrogenase/isocitrate dehydrogenase
RA 4,522,022 A→C 11.8% intergenic (‑241/‑174) icd ← / → idh NADP(+)‑specific isocitrate dehydrogenase/isocitrate dehydrogenase
RA 4,528,397 T→A 20.0% intergenic (+28/‑48) purB → / → PP_4017 adenylosuccinate lyase/hypothetical protein
RA 4,528,861 C→A 11.4% N139K (AAC→AAA)  PP_4017 → hypothetical protein
RA 4,530,069 T→A 17.2% intergenic (+31/‑137) PP_4018 → / → topB acetyltransferase/DNA topoisomerase III
RA 4,530,070 T→A 20.1% intergenic (+32/‑136) PP_4018 → / → topB acetyltransferase/DNA topoisomerase III
RA 4,552,005 G→A 14.3% intergenic (+55/+126) pydA → / ← rutR NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA 4,564,768 C→T 17.4% intergenic (‑864/‑34) vgrG‑III ← / → glgA type VI secretion system protein/glycogen synthase
RA 4,564,769 A→G 17.5% intergenic (‑865/‑33) vgrG‑III ← / → glgA type VI secretion system protein/glycogen synthase
RA 4,610,342 C→G 8.7% I261M (ATC→ATG)  PP_4081 → type IV/VI secretion system protein
RA 4,610,345 C→G 8.7% A262A (GCC→GCG)  PP_4081 → type IV/VI secretion system protein
RA 4,650,990 G→T 13.8% intergenic (‑31/+23) PP_4113 ← / ← PP_4114 hypothetical protein/hypothetical protein
RA 4,705,459 T→A 16.3% intergenic (‑151/+26) kdpF ← / ← PP_4162 potassium‑transporting ATPase subunit F/membrane protein
RA 4,705,460 T→A 16.6% intergenic (‑152/+25) kdpF ← / ← PP_4162 potassium‑transporting ATPase subunit F/membrane protein
RA 4,705,470 A→G 11.4% intergenic (‑162/+15) kdpF ← / ← PP_4162 potassium‑transporting ATPase subunit F/membrane protein
RA 4,705,471 G→A 11.4% intergenic (‑163/+14) kdpF ← / ← PP_4162 potassium‑transporting ATPase subunit F/membrane protein
RA 4,719,068 C→T 11.8% S258N (AGT→AAT)  PP_4176 ← 5‑oxo‑L‑prolinase
RA 4,727,359 T→C 15.5% A23A (GCA→GCG)  brnQ ← branched‑chain amino acid transporter
RA 4,740,884 C→G 9.2% intergenic (+75/+677) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,273:1 +C 56.0% intergenic (+464/+288) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,274 A→C 43.8% intergenic (+465/+287) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,275 A→G 57.3% intergenic (+466/+286) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,276 C→G 43.6% intergenic (+467/+285) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,277 C→T 64.3% intergenic (+468/+284) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,279 C→T 27.8% intergenic (+470/+282) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,280 C→T 64.4% intergenic (+471/+281) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,283 C→G 100% intergenic (+474/+278) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,285 2 bp→CT 100% intergenic (+476/+275) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,298:1 +T 46.7% intergenic (+489/+263) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,299 C→T 53.2% intergenic (+490/+262) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,301 A→C 53.2% intergenic (+492/+260) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,302 A→G 46.8% intergenic (+493/+259) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,304 C→G 52.9% intergenic (+495/+257) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,305 A→C 53.3% intergenic (+496/+256) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,744,784 G→A 9.1% A29A (GCC→GCT)  PP_4198 ← OmpA family protein
RA 4,744,788 C→G 8.9% S28T (AGT→ACT)  PP_4198 ← OmpA family protein
RA 4,744,792 T→C 9.1% S27G (AGC→GGC)  PP_4198 ← OmpA family protein
RA 4,767,863 C→T 13.5% intergenic (+32/+37) fpvA → / ← PP_4218 TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA 4,767,864 A→G 13.5% intergenic (+33/+36) fpvA → / ← PP_4218 TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA 4,806,160 A→T 12.1% S593T (TCG→ACG)  PP_4234 ← bifunctional aldehyde oxidase/xanthine dehydrogenase
RA 4,806,161 A→T 12.1% R592R (CGT→CGA)  PP_4234 ← bifunctional aldehyde oxidase/xanthine dehydrogenase
RA 4,842,941 Δ1 bp 18.2% intergenic (+40/‑257) ccoP‑II → / → PP_4259 cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA 4,842,949:1 +G 16.4% intergenic (+48/‑249) ccoP‑II → / → PP_4259 cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA 4,866,068 G→T 15.6% R171R (CGC→CGA)  PP_4277 ← GntR family transcriptional regulator
RA 4,866,075 T→A 16.7% D169V (GAC→GTC)  PP_4277 ← GntR family transcriptional regulator
RA 4,902,716 G→A 10.5% V196M (GTG→ATG) ‡ PP_4310 → hydantoin racemase
RA 4,902,717 T→C 10.5% V196A (GTG→GCG) ‡ PP_4310 → hydantoin racemase
RA 4,917,404 A→T 9.3% F25I (TTC→ATC)  ccmA ← cytochrome c biogenesis ABC transporter ATP‑binding protein CcmA
RA 4,917,405 A→T 9.3% D24E (GAT→GAA)  ccmA ← cytochrome c biogenesis ABC transporter ATP‑binding protein CcmA
RA 4,945,342 T→C 11.1% intergenic (+657/+141) PP_5673 → / ← flhB D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA 4,945,346 C→T 11.1% intergenic (+661/+137) PP_5673 → / ← flhB D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA 4,969,261 G→T 20.1% L343I (CTA→ATA)  fliC ← flagellin
RA 4,976,257 C→G 8.4% D187H (GAC→CAC)  flgJ ← peptidoglycan hydrolase FlgJ
RA 4,995,569 Δ1 bp 10.5% coding (1185/1272 nt) bkdB → branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA 4,995,572:1 +G 9.8% coding (1188/1272 nt) bkdB → branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA 5,025,416 C→T 13.8% P397L (CCA→CTA) ‡ PP_4429 → GntR family transcriptional regulator
RA 5,025,417 A→G 14.8% P397P (CCA→CCG) ‡ PP_4429 → GntR family transcriptional regulator
RA 5,079,174 T→A 17.9% intergenic (‑371/+26) mgtE ← / ← PP_t56 magnesium transporter/tRNA‑Arg
RA 5,079,177 T→A 19.0% intergenic (‑374/+23) mgtE ← / ← PP_t56 magnesium transporter/tRNA‑Arg
RA 5,115,762 C→A 13.4% R24R (CGG→CGT)  PP_4500 ← TrpH family protein
RA 5,120,021 C→T 11.4% A95T (GCC→ACC)  PP_4506 ← nitroreductase family protein
RA 5,140,444 A→C 7.2% intergenic (+108/+272) PP_4524 → / ← PP_4525 sodium‑solute symporter/LysR family transcriptional regulator
RA 5,141,747 G→A 34.4% V12M (GTG→ATG) ‡ PP_4526 → MFS transporter
RA 5,141,748 T→C 34.1% V12A (GTG→GCG) ‡ PP_4526 → MFS transporter
RA 5,168,846 T→C 9.5% V139A (GTG→GCG)  PP_4547 → glutamine synthetase
RA 5,173,292 T→C 22.0% intergenic (‑285/+47) fadD‑I ← / ← fadD‑II long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA 5,173,295 G→C 23.3% intergenic (‑288/+44) fadD‑I ← / ← fadD‑II long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA 5,173,296 G→C 23.3% intergenic (‑289/+43) fadD‑I ← / ← fadD‑II long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA 5,173,299 G→A 24.5% intergenic (‑292/+40) fadD‑I ← / ← fadD‑II long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA 5,182,107 G→T 20.1% intergenic (‑117/+37) PP_4560 ← / ← csbD ribonuclease BN/stress response protein
RA 5,182,113 T→G 22.8% intergenic (‑123/+31) PP_4560 ← / ← csbD ribonuclease BN/stress response protein
RA 5,182,114 C→A 20.6% intergenic (‑124/+30) PP_4560 ← / ← csbD ribonuclease BN/stress response protein
RA 5,182,120 A→C 16.7% intergenic (‑130/+24) PP_4560 ← / ← csbD ribonuclease BN/stress response protein
RA 5,182,884 G→T 11.1% R109L (CGC→CTC)  PP_4562 → hypothetical protein
RA 5,182,887 A→C 13.9% D110A (GAC→GCC)  PP_4562 → hypothetical protein
RA 5,182,894 T→G 13.6% R112R (CGT→CGG)  PP_4562 → hypothetical protein
RA 5,182,895 C→A 13.9% P113T (CCG→ACG)  PP_4562 → hypothetical protein
RA 5,182,902 G→T 11.4% G115V (GGC→GTC)  PP_4562 → hypothetical protein
RA 5,239,932 G→A 13.0% A144V (GCG→GTG)  ldh ← leucine dehydrogenase
RA 5,239,937 T→C 12.8% P142P (CCA→CCG)  ldh ← leucine dehydrogenase
RA 5,240,615 C→G 15.4% H43Q (CAC→CAG)  PP_4618 → hypothetical protein
RA 5,240,617 A→T 19.2% D44V (GAC→GTC)  PP_4618 → hypothetical protein
RA 5,240,619 C→G 15.4% L45V (CTG→GTG)  PP_4618 → hypothetical protein
RA 5,255,730 G→T 14.3% G71V (GGC→GTC)  folM → bifunctional dihydrofolate reductase/dihydromonapterin reductase
RA 5,324,205 T→G 12.5% L264R (CTG→CGG)  PP_4684 → kinase‑like domain‑containing protein
RA 5,338,098 C→G 14.8% intergenic (+57/‑227) PP_4696 → / → PP_mr53 nitrogen regulation protein NR(I)/CrcZ ncRNA
RA 5,338,101 C→G 14.3% intergenic (+60/‑224) PP_4696 → / → PP_mr53 nitrogen regulation protein NR(I)/CrcZ ncRNA
RA 5,362,263 C→G 14.7% V49L (GTG→CTG)  tpiA ← triose phosphate isomerase
RA 5,362,264 C→G 15.1% Q48H (CAG→CAC)  tpiA ← triose phosphate isomerase
RA 5,364,611 A→T 16.7% V24D (GTC→GAC)  folP ← dihydropteroate synthase
RA 5,378,931 C→G 11.8% A156A (GCC→GCG)  recN → DNA repair/recombination protein
RA 5,378,932 C→G 11.8% R157G (CGC→GGC)  recN → DNA repair/recombination protein
RA 5,420,007 G→C 8.5% A215A (GCG→GCC)  PP_4759 → transcriptional regulator, GntR family
RA 5,420,010 G→C 8.5% R216R (CGG→CGC)  PP_4759 → transcriptional regulator, GntR family
RA 5,427,336 T→A 14.4% D272V (GAC→GTC)  rhlE‑I ← ATP‑dependent RNA helicase
RA 5,427,343 T→C 12.1% N270D (AAT→GAT)  rhlE‑I ← ATP‑dependent RNA helicase
RA 5,455,695 A→C 14.5% intergenic (‑55/+80) PP_4792 ← / ← PP_4793 hypothetical protein/hypothetical protein
RA 5,456,659 C→A 10.2% L115M (CTG→ATG)  leuS → leucine‑‑tRNA ligase
RA 5,458,940:1 +A 15.4% intergenic (+17/‑45) leuS → / → PP_4795 leucine‑‑tRNA ligase/lipoprotein
RA 5,458,946 Δ1 bp 14.8% intergenic (+23/‑39) leuS → / → PP_4795 leucine‑‑tRNA ligase/lipoprotein
RA 5,471,540 T→C 9.1% E138G (GAG→GGG)  mrdA‑II ← transpeptidase
RA 5,472,204 T→A 17.3% K95M (AAG→ATG) ‡ rlmH ← 23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA 5,472,205 T→A 17.3% K95* (AAG→TAG) ‡ rlmH ← 23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA 5,486,218 G→T 13.7% V310V (GTG→GTT)  purD → phosphoribosylamine‑‑glycine ligase
RA 5,512,666 C→T 9.7% T85M (ACG→ATG)  urtD → ABC transporter ATP‑binding protein
RA 5,525,818 C→A 12.9% intergenic (+60/‑63) PP_4858 → / → PP_4859 hypothetical protein/TetR family transcriptional regulator
RA 5,525,821 T→G 12.9% intergenic (+63/‑60) PP_4858 → / → PP_4859 hypothetical protein/TetR family transcriptional regulator
RA 5,539,537 A→C 21.4% R499R (CGT→CGG)  PP_4872 ← hypothetical protein
RA 5,539,540 G→T 22.3% A498A (GCC→GCA)  PP_4872 ← hypothetical protein
RA 5,549,653 T→A 8.7% intergenic (+18/‑154) PP_t47 → / → PP_4881 tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA 5,549,654 T→A 8.7% intergenic (+19/‑153) PP_t47 → / → PP_4881 tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA 5,566,464 T→A 13.3% Q358L (CAG→CTG)  mutL ← DNA mismatch repair protein MutL
RA 5,566,467 T→A 13.3% Q357L (CAG→CTG)  mutL ← DNA mismatch repair protein MutL
RA 5,581,752 T→G 9.7% F246V (TTC→GTC)  PP_4910 → hypothetical protein
RA 5,581,760 C→A 9.5% D248E (GAC→GAA)  PP_4910 → hypothetical protein
RA 5,601,862:1 +C 10.0% coding (1671/5418 nt) PP_4924 ← subtilase family serine protease
RA 5,623,312 A→T 19.2% H159Q (CAT→CAA)  PP_4941 ← hypothetical protein
RA 5,624,802 C→G 9.8% G337A (GGG→GCG)  PP_4943 ← glycosyl transferase
RA 5,641,506 C→G 12.8% S373C (TCC→TGC)  PP_4951 → EmrB/QacA family drug resistance transporter
RA 5,641,511 C→G 13.6% Q375E (CAG→GAG)  PP_4951 → EmrB/QacA family drug resistance transporter
RA 5,644,635:1 +G 11.8% intergenic (+65/‑64) yhiN → / → PP_4954 FAD/NAD(P)‑binding domain‑containing oxidoreductase/membrane protein
RA 5,644,639 T→A 11.1% intergenic (+69/‑60) yhiN → / → PP_4954 FAD/NAD(P)‑binding domain‑containing oxidoreductase/membrane protein
RA 5,644,643 Δ1 bp 12.1% intergenic (+73/‑56) yhiN → / → PP_4954 FAD/NAD(P)‑binding domain‑containing oxidoreductase/membrane protein
RA 5,651,425 T→G 15.3% intergenic (‑182/+31) PP_4959 ← / ← fba diguanylate cyclase/fructose‑bisphosphate aldolase
RA 5,651,428 C→A 15.6% intergenic (‑185/+28) PP_4959 ← / ← fba diguanylate cyclase/fructose‑bisphosphate aldolase
RA 5,655,682 T→G 17.2% intergenic (‑86/+66) epd ← / ← tktA D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA 5,655,687 C→A 17.1% intergenic (‑91/+61) epd ← / ← tktA D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA 5,655,692 Δ1 bp 17.1% intergenic (‑96/+56) epd ← / ← tktA D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA 5,661,297 Δ1 bp 10.5% coding (871/1701 nt) ligB → DNA ligase B
RA 5,661,303:1 +C 11.1% coding (877/1701 nt) ligB → DNA ligase B
RA 5,672,863 G→A 13.8% A19T (GCG→ACG)  rhlE‑II → ATP‑dependent RNA helicase
RA 5,674,716 A→G 13.8% intergenic (+27/+114) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA 5,685,956 G→C 10.6% P331P (CCC→CCG) ‡ PP_4988 ← signal transduction histidine kinase CheA/CheY‑like receiver
RA 5,685,958 G→C 10.6% P331A (CCC→GCC) ‡ PP_4988 ← signal transduction histidine kinase CheA/CheY‑like receiver
RA 5,685,967 G→C 7.9% R328G (CGC→GGC)  PP_4988 ← signal transduction histidine kinase CheA/CheY‑like receiver
RA 5,740,523 T→G 13.9% intergenic (+32/+39) hutF → / ← PP_5037 formiminoglutamate deiminase/lipocalin family lipoprotein
RA 5,740,526 A→T 15.4% intergenic (+35/+36) hutF → / ← PP_5037 formiminoglutamate deiminase/lipocalin family lipoprotein
RA 5,740,527 A→T 15.0% intergenic (+36/+35) hutF → / ← PP_5037 formiminoglutamate deiminase/lipocalin family lipoprotein
RA 5,740,530 C→A 14.7% intergenic (+39/+32) hutF → / ← PP_5037 formiminoglutamate deiminase/lipocalin family lipoprotein
RA 5,741,559 C→T 11.9% intergenic (‑174/+54) PP_5038 ← / ← PP_5039 lipoprotein/hypothetical protein
RA 5,741,564 A→T 16.8% intergenic (‑179/+49) PP_5038 ← / ← PP_5039 lipoprotein/hypothetical protein
RA 5,743,387 G→A 10.9% intergenic (‑164/+83) fbp ← / ← glgP class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA 5,743,391 T→C 10.8% intergenic (‑168/+79) fbp ← / ← glgP class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA 5,750,485 A→T 11.9% L378L (CTT→CTA) ‡ thiI ← tRNA sulfurtransferase
RA 5,750,486 A→T 12.5% L378H (CTT→CAT) ‡ thiI ← tRNA sulfurtransferase
RA 5,753,541 T→G 18.7% intergenic (+46/‑320) glnA → / → glnL glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA 5,753,542 C→A 18.1% intergenic (+47/‑319) glnA → / → glnL glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA 5,793,941 A→G 13.8% F1339L (TTT→CTT)  gltB ← L‑glutamate synthase subunit alpha
RA 5,793,943 A→T 12.9% L1338Q (CTG→CAG)  gltB ← L‑glutamate synthase subunit alpha
RA 5,793,945 C→T 13.3% K1337K (AAG→AAA)  gltB ← L‑glutamate synthase subunit alpha
RA 5,827,810 G→C 11.4% G223R (GGG→CGG) ‡ mtgA → monofunctional biosynthetic peptidoglycan transglycosylase
RA 5,827,811 G→C 11.5% G223A (GGG→GCG) ‡ mtgA → monofunctional biosynthetic peptidoglycan transglycosylase
RA 5,839,742 T→A 10.0% intergenic (+63/+40) yheT → / ← sseA putative hydrolase/3‑mercaptopyruvate sulfurtransferase
RA 5,845,651:1 +A 15.2% intergenic (+20/‑82) coaD → / → yfhL phosphopantetheine adenylyltransferase/4Fe‑4S cluster‑containing protein
RA 5,845,658 Δ1 bp 14.7% intergenic (+27/‑75) coaD → / → yfhL phosphopantetheine adenylyltransferase/4Fe‑4S cluster‑containing protein
RA 5,849,104 A→G 14.2% intergenic (+23/‑248) rlmI → / → ilvD ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA 5,872,077 T→A 8.3% D211V (GAC→GTC)  ptsP ← phosphoenolpyruvate‑dependent regulator
RA 5,903,220 G→T 26.8% intergenic (‑128/‑140) PP_5175 ← / → PP_5176 HlyD family secretion protein/hypothetical protein
RA 5,903,221 A→C 27.0% intergenic (‑129/‑139) PP_5175 ← / → PP_5176 HlyD family secretion protein/hypothetical protein
RA 5,914,167 G→A 13.9% intergenic (+3/+150) spuI → / ← argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA 5,914,180 C→T 20.0% intergenic (+16/+137) spuI → / ← argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA 5,914,182 C→G 19.4% intergenic (+18/+135) spuI → / ← argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA 5,914,184 A→G 19.4% intergenic (+20/+133) spuI → / ← argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA 5,914,280 T→C 14.3% intergenic (+116/+37) spuI → / ← argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA 5,938,718 T→A 11.5% L408Q (CTG→CAG)  rbbA → ribosome‑associated ATPase
RA 5,958,085 A→C 8.9% Y478S (TAC→TCC)  cyaA → adenylate cyclase
RA 5,958,089 C→G 9.5% H479Q (CAC→CAG)  cyaA → adenylate cyclase
RA 5,958,093 G→T 10.0% E481* (GAG→TAG)  cyaA → adenylate cyclase
RA 5,979,209 T→A 6.7% intergenic (‑37/‑203) PP_5241 ← / → PP_5242 LuxR family transcriptional regulator/GAF domain‑containing sensor histidine kinase
RA 5,984,492 T→C 13.9% intergenic (+32/+57) PP_5242 → / ← ycaC‑II GAF domain‑containing sensor histidine kinase/putative hydrolase
RA 5,984,498 G→A 14.6% intergenic (+38/+51) PP_5242 → / ← ycaC‑II GAF domain‑containing sensor histidine kinase/putative hydrolase
RA 5,984,500 T→C 14.6% intergenic (+40/+49) PP_5242 → / ← ycaC‑II GAF domain‑containing sensor histidine kinase/putative hydrolase
RA 5,984,503 G→A 14.6% intergenic (+43/+46) PP_5242 → / ← ycaC‑II GAF domain‑containing sensor histidine kinase/putative hydrolase
RA 5,984,505 T→C 14.6% intergenic (+45/+44) PP_5242 → / ← ycaC‑II GAF domain‑containing sensor histidine kinase/putative hydrolase
RA 5,984,511 G→A 16.2% intergenic (+51/+38) PP_5242 → / ← ycaC‑II GAF domain‑containing sensor histidine kinase/putative hydrolase
RA 5,988,865 G→A 29.2% intergenic (+103/‑443) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,875 T→C 32.4% intergenic (+113/‑433) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,880 C→T 31.4% intergenic (+118/‑428) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,881 G→T 32.8% intergenic (+119/‑427) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,882 C→T 32.5% intergenic (+120/‑426) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,885 A→G 31.9% intergenic (+123/‑423) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,891 G→C 32.4% intergenic (+129/‑417) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,893 C→G 32.4% intergenic (+131/‑415) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,896 C→T 32.3% intergenic (+134/‑412) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,900 C→G 31.6% intergenic (+138/‑408) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,904 C→T 30.8% intergenic (+142/‑404) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,906 C→T 30.4% intergenic (+144/‑402) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,945 C→A 34.6% intergenic (+183/‑363) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,950 C→T 36.3% intergenic (+188/‑358) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,951 A→G 36.3% intergenic (+189/‑357) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,961 T→C 35.8% intergenic (+199/‑347) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,967 Δ1 bp 34.5% intergenic (+205/‑341) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,994,817 G→C 11.3% V496V (GTG→GTC)  PP_5251 → transporter
RA 5,994,821:1 +G 11.1% coding (1492/1599 nt) PP_5251 → transporter
RA 5,997,245:1 +G 17.6% intergenic (‑158/+42) PP_5252 ← / ← PP_5253 hypothetical protein/arylesterase
RA 5,997,250 Δ1 bp 17.0% intergenic (‑163/+37) PP_5252 ← / ← PP_5253 hypothetical protein/arylesterase
RA 6,000,476 A→T 8.9% S319C (AGC→TGC) ‡ PP_5256 → cyclic nucleotide‑binding protein
RA 6,000,478 C→G 9.1% S319R (AGC→AGG) ‡ PP_5256 → cyclic nucleotide‑binding protein
RA 6,000,481 C→G 9.4% R320R (CGC→CGG)  PP_5256 → cyclic nucleotide‑binding protein
RA 6,000,483 A→T 9.0% Q321L (CAG→CTG)  PP_5256 → cyclic nucleotide‑binding protein
RA 6,005,029 G→C 8.3% intergenic (+11/‑165) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,005,043 T→G 10.3% intergenic (+25/‑151) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,005,050 G→C 18.3% intergenic (+32/‑144) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,005,053 A→T 19.1% intergenic (+35/‑141) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,005,056 G→C 17.8% intergenic (+38/‑138) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,005,063 C→A 12.8% intergenic (+45/‑131) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,005,077 G→C 8.5% intergenic (+59/‑117) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,015,757 G→C 11.1% H22D (CAT→GAT)  PP_5266 ← acetyl‑CoA hydrolase family protein
RA 6,015,758 G→C 11.1% I21M (ATC→ATG)  PP_5266 ← acetyl‑CoA hydrolase family protein
RA 6,022,727 G→C 7.9% L293L (CTG→CTC)  PP_5273 → oxidoreductase
RA 6,032,841 C→T 11.1% intergenic (+49/+87) dppA‑IV → / ← PP_5284 dipeptide transport protein/hypothetical protein
RA 6,032,844 G→A 10.8% intergenic (+52/+84) dppA‑IV → / ← PP_5284 dipeptide transport protein/hypothetical protein
RA 6,032,846 Δ1 bp 10.8% intergenic (+54/+82) dppA‑IV → / ← PP_5284 dipeptide transport protein/hypothetical protein
RA 6,032,849 G→C 11.1% intergenic (+57/+79) dppA‑IV → / ← PP_5284 dipeptide transport protein/hypothetical protein
RA 6,032,856 A→G 11.1% intergenic (+64/+72) dppA‑IV → / ← PP_5284 dipeptide transport protein/hypothetical protein
RA 6,052,930 A→C 14.7% L198R (CTG→CGG) ‡ PP_5305 ← epimerase/dehydratase‑like protein
RA 6,052,931 G→T 15.4% L198M (CTG→ATG) ‡ PP_5305 ← epimerase/dehydratase‑like protein
RA 6,070,833 A→T 6.4% intergenic (‑133/+30) PP_5324 ← / ← phoU two‑component system response regulator/phosphate transport‑associated protein
RA 6,070,834 A→T 6.3% intergenic (‑134/+29) PP_5324 ← / ← phoU two‑component system response regulator/phosphate transport‑associated protein
RA 6,080,201 A→T 8.3% Q30L (CAG→CTG)  PP_5332 → hypothetical protein
RA 6,080,204 A→T 8.3% Q31L (CAG→CTG)  PP_5332 → hypothetical protein
RA 6,081,044 T→A 16.2% intergenic (+35/+27) PP_5332 → / ← PP_5333 hypothetical protein/hypothetical protein
RA 6,081,045 T→A 16.8% intergenic (+36/+26) PP_5332 → / ← PP_5333 hypothetical protein/hypothetical protein
RA 6,084,141 C→A 7.3% L212F (TTG→TTT)  PP_5337 ← LysR family transcriptional regulator
RA 6,107,734 G→C 9.7% R159G (CGC→GGC)  pdxY ← pyridoxamine kinase
RA 6,112,033 T→A 14.3% H118Q (CAT→CAA)  PP_5362 → hypothetical protein
RA 6,130,169 G→C 8.8% A107G (GCC→GGC)  PP_5378 ← metal‑binding protein
RA 6,171,893 Δ1 bp 8.2% coding (465/1836 nt) glmS ← L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA 6,171,897:1 +C 9.3% coding (461/1836 nt) glmS ← L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA 6,174,764 G→T 23.4% intergenic (‑70/+49) glmU ← / ← atpC bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon
RA 6,174,765 A→C 23.4% intergenic (‑71/+48) glmU ← / ← atpC bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 171364–176266 176266 1–4903 7 [6] [6] 7 PP_16SA–[PP_5SA] PP_16SA,PP_23SA,[PP_5SA]
* * ÷ NC_002947 176650–181676 181676 1–5027 7 [6] [6] 8 PP_16SB–[PP_r01] PP_16SB,PP_23SB,[PP_r01]
* * ÷ NC_002947 1131741 1131802 62 8 [6] [6] 7 PP_0992 hypothetical protein
* * ÷ NC_002947 4808205 4808218 14 15 [0] [0] 22 PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 9037429 (0.980)6 (0.230) 6/214 NT 16.4% intergenic (+49/+73) PP_0079/PP_0080 transcriptional regulator/hypothetical protein
?NC_002947 = 90397 36 (1.400)intergenic (+72/+50) PP_0079/PP_0080 transcriptional regulator/hypothetical protein
* ? NC_002947 = 13893855 (1.860)8 (0.270) 8/246 NT 12.6% coding (1566/1782 nt) kinB alginate biosynthesis sensor protein KinB
?NC_002947 = 138962 56 (1.900)coding (1542/1782 nt) kinB alginate biosynthesis sensor protein KinB
* ? NC_002947 173080 =NA (NA)4 (0.140) 4/234 NT NA intergenic (+170/‑123) PP_16SA/PP_23SA 16S ribosomal RNA/23S ribosomal RNA
?NC_002947 173100 = NA (NA)intergenic (+190/‑103) PP_16SA/PP_23SA 16S ribosomal RNA/23S ribosomal RNA
* ? NC_002947 = 174906NA (NA)7 (0.250) 7/236 NT NA noncoding (1704/2902 nt) PP_23SA 23S ribosomal RNA
?NC_002947 = 174936 NA (NA)noncoding (1734/2902 nt) PP_23SA 23S ribosomal RNA
* ? NC_002947 = 19216735 (1.180)7 (0.240) 6/240 NT 16.4% coding (1351/2157 nt) paxB toxin secretion ATP‑binding protein
?NC_002947 = 192188 37 (1.280)coding (1330/2157 nt) paxB toxin secretion ATP‑binding protein
* ? NC_002947 = 20561228 (0.950)12 (0.420) 8/236 NT 31.2% coding (11118/26049 nt) PP_0168 putative surface adhesion protein
?NC_002947 = 205620 26 (0.920)coding (11126/26049 nt) PP_0168 putative surface adhesion protein
* ? NC_002947 = 209275NA (NA)6 (0.210) 6/242 NT 21.0% coding (14781/26049 nt) PP_0168 putative surface adhesion protein
?NC_002947 = 210616 23 (0.780)coding (16122/26049 nt) PP_0168 putative surface adhesion protein
* ? NC_002947 222180 =35 (1.180)3 (0.110) 3/224 NT 9.0% coding (35/1020 nt) PP_0170 ABC transporter substrate‑binding protein
?NC_002947 222241 = 29 (1.080)coding (96/1020 nt) PP_0170 ABC transporter substrate‑binding protein
* ? NC_002947 235331 =39 (1.320)4 (0.160) 4/214 NT 12.7% intergenic (+28/+97) PP_0183/argH glutathione S‑transferase/argininosuccinate lyase
?NC_002947 235390 = 21 (0.820)intergenic (+87/+38) PP_0183/argH glutathione S‑transferase/argininosuccinate lyase
* ? NC_002947 = 25178129 (0.980)3 (0.110) 3/232 NT 9.6% intergenic (+22/‑40) PP_0201/PP_5432 hypothetical protein/hypothetical protein
?NC_002947 = 251799 29 (1.040)intergenic (+40/‑22) PP_0201/PP_5432 hypothetical protein/hypothetical protein
* ? NC_002947 325064 =46 (1.560)4 (0.140) 4/234 NT 8.9% coding (348/1320 nt) oprQ outer‑membrane porin D
?NC_002947 325089 = 38 (1.350)coding (373/1320 nt) oprQ outer‑membrane porin D
* ? NC_002947 332790 =36 (1.220)3 (0.110) 3/220 NT 8.8% intergenic (‑102/‑74) PP_0273/PP_5435 hypothetical protein/hypothetical protein
?NC_002947 332821 = 30 (1.140)intergenic (‑133/‑43) PP_0273/PP_5435 hypothetical protein/hypothetical protein
* ? NC_002947 = 34351242 (1.420)6 (0.210) 7/236 NT 12.7% intergenic (‑65/‑175) PP_5439/PP_5440 hypothetical protein/hypothetical protein
?NC_002947 = 343531 42 (1.480)intergenic (‑84/‑156) PP_5439/PP_5440 hypothetical protein/hypothetical protein
* ? NC_002947 356613 =19 (0.640)6 (0.210) 5/234 NT 23.5% intergenic (‑407/‑46) cbcX/tdcG‑I choline/betaine/carnitine ABC transporter substrate‑binding protein/L‑serine dehydratase
?NC_002947 356630 = 21 (0.750)intergenic (‑424/‑29) cbcX/tdcG‑I choline/betaine/carnitine ABC transporter substrate‑binding protein/L‑serine dehydratase
* ? NC_002947 380836 =36 (1.220)5 (0.210) 5/200 NT 13.3% intergenic (+23/+86) gbcB/PP_0317 glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
?NC_002947 380916 = 36 (1.500)intergenic (+103/+6) gbcB/PP_0317 glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
* ? NC_002947 390237 =31 (1.050)3 (0.110) 3/232 NT 9.8% coding (508/3015 nt) soxA sarcosine oxidase subunit alpha
?NC_002947 390307 = 26 (0.930)coding (578/3015 nt) soxA sarcosine oxidase subunit alpha
* ? NC_002947 = 42796539 (1.320)5 (0.170) 4/242 NT 11.4% intergenic (‑164/+88) PP_0350/PP_0351 ferrichrome‑iron receptor/transmembrane sensor
?NC_002947 = 428006 39 (1.340)intergenic (‑205/+47) PP_0350/PP_0351 ferrichrome‑iron receptor/transmembrane sensor
* ? NC_002947 = 42866336 (1.220)3 (0.100) 3/240 NT 7.7% coding (347/957 nt) PP_0351 transmembrane sensor
?NC_002947 = 428728 37 (1.280)coding (282/957 nt) PP_0351 transmembrane sensor
* ? NC_002947 445062 =34 (1.150)9 (0.390) 9/192 NT 25.9% intergenic (+32/‑256) PP_0367/PP_0368 hypothetical protein/acyl‑CoA dehydrogenase
?NC_002947 445155 = 25 (1.090)intergenic (+125/‑163) PP_0367/PP_0368 hypothetical protein/acyl‑CoA dehydrogenase
* ? NC_002947 = 48245739 (1.320)3 (0.110) 3/224 NT 7.3% intergenic (‑94/+62) PP_0396/yeaG hypothetical protein/protein kinase
?NC_002947 = 482485 41 (1.520)intergenic (‑122/+34) PP_0396/yeaG hypothetical protein/protein kinase
* ? NC_002947 = 50787938 (1.290)4 (0.140) 4/232 NT 9.4% coding (1135/1890 nt) estP esterase EstP
?NC_002947 = 507888 41 (1.470)coding (1126/1890 nt) estP esterase EstP
* ? NC_002947 = 61430028 (0.950)7 (0.320) 5/184 NT 21.9% intergenic (‑116/+62) dxs/ispA 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase
?NC_002947 = 614316 29 (1.320)intergenic (‑132/+46) dxs/ispA 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase
* ? NC_002947 = 63621543 (1.460)4 (0.140) 4/234 NT 8.9% coding (436/1350 nt) mpl UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
?NC_002947 = 636232 41 (1.460)coding (453/1350 nt) mpl UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
* ? NC_002947 = 63715744 (1.490)4 (0.140) 4/234 NT 8.6% coding (32/630 nt) PP_0548 phenylacrylic acid decarboxylase PadA
?NC_002947 = 637180 43 (1.530)coding (55/630 nt) PP_0548 phenylacrylic acid decarboxylase PadA
* ? NC_002947 = 65278518 (0.610)11 (0.450) 10/206 NT 59.4% coding (1961/1962 nt) ctpL methyl‑accepting chemotaxis protein CtpL
?NC_002947 = 4808204 0 (0.000)intergenic (‑268/‑287) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
* ? NC_002947 = 66154132 (1.080)4 (0.160) 4/214 NT 11.1% intergenic (+48/+79) PP_0568/PP_0569 hypothetical protein/MATE efflux family protein
?NC_002947 = 661574 36 (1.400)intergenic (+81/+46) PP_0568/PP_0569 hypothetical protein/MATE efflux family protein
* ? NC_002947 675325 =33 (1.120)3 (0.110) 3/234 NT 7.9% coding (377/696 nt) PP_0577 hypothetical protein
?NC_002947 675387 = 39 (1.390)coding (315/696 nt) PP_0577 hypothetical protein
* ? NC_002947 675401 =43 (1.460)3 (0.110) 3/224 NT 7.2% coding (301/696 nt) PP_0577 hypothetical protein
?NC_002947 675451 = 38 (1.410)coding (251/696 nt) PP_0577 hypothetical protein
* ? NC_002947 786595 =46 (1.560)5 (0.190) 5/224 NT 12.5% intergenic (+14/‑291) PP_0673/ettA hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
?NC_002947 786703 = 28 (1.040)intergenic (+122/‑183) PP_0673/ettA hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
* ? NC_002947 846685 =21 (0.710)4 (0.140) 4/238 NT 15.6% coding (518/1191 nt) PP_0729 hypothetical protein
?NC_002947 846705 = 23 (0.800)coding (498/1191 nt) PP_0729 hypothetical protein
* ? NC_002947 867938 =54 (1.830)7 (0.270) 7/216 NT 13.7% intergenic (+33/+144) PP_0750/mqo‑I hypothetical protein/malate:quinone oxidoreductase
?NC_002947 867998 = 41 (1.580)intergenic (+93/+84) PP_0750/mqo‑I hypothetical protein/malate:quinone oxidoreductase
* ? NC_002947 884638 =37 (1.250)5 (0.170) 5/240 NT 11.6% coding (546/2718 nt) PP_0767 LuxR family transcriptional regulator
?NC_002947 884681 = 40 (1.390)coding (589/2718 nt) PP_0767 LuxR family transcriptional regulator
* ? NC_002947 892835 =31 (1.050)4 (0.140) 4/244 NT 11.6% coding (883/2088 nt) pta phosphate acetyltransferase
?NC_002947 892868 = 30 (1.020)coding (850/2088 nt) pta phosphate acetyltransferase
* ? NC_002947 911026 =43 (1.460)4 (0.140) 4/238 NT 9.3% coding (1531/2853 nt) fruB PTS fructose transporter subunit EI/HPr/IIA
?NC_002947 911059 = 36 (1.260)coding (1564/2853 nt) fruB PTS fructose transporter subunit EI/HPr/IIA
* ? NC_002947 996911 =35 (1.180)6 (0.220) 5/226 NT 15.0% coding (688/2550 nt) PP_0860 sulfite reductase flavoprotein subunit
?NC_002947 996946 = 36 (1.330)coding (653/2550 nt) PP_0860 sulfite reductase flavoprotein subunit
* ? NC_002947 1013201 =26 (0.880)7 (0.310) 7/186 NT 32.1% intergenic (+26/+105) prfC/potF‑I peptide chain release factor 3/putrescine‑binding protein
?NC_002947 1013289 = 10 (0.450)intergenic (+114/+17) prfC/potF‑I peptide chain release factor 3/putrescine‑binding protein
* ? NC_002947 1022041 =43 (1.460)4 (0.140) 4/232 NT 8.7% intergenic (‑52/+40) dppB/dppA‑I dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein
?NC_002947 1022070 = 43 (1.540)intergenic (‑81/+11) dppB/dppA‑I dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein
* ? NC_002947 1025270 =44 (1.490)6 (0.260) 5/192 NT 15.9% intergenic (‑121/+108) opdP/dppA‑II glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
?NC_002947 1025363 = 29 (1.260)intergenic (‑214/+15) opdP/dppA‑II glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
* ? NC_002947 1114875 =28 (0.950)6 (0.260) 5/196 NT 29.1% intergenic (‑64/+115) rlmF/valS ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
?NC_002947 1114951 = 7 (0.300)intergenic (‑140/+39) rlmF/valS ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
* ? NC_002947 1128401 =33 (1.120)5 (0.170) 4/246 NT 12.5% coding (1156/2856 nt) gcvP‑I glycine dehydrogenase
?NC_002947 1128443 = 37 (1.250)coding (1114/2856 nt) gcvP‑I glycine dehydrogenase
* ? NC_002947 1149928 =41 (1.390)4 (0.160) 3/210 NT 14.0% intergenic (‑169/+88) PP_1008/gapA RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
?NC_002947 = 2071204 14 (0.560)intergenic (+113/+114) PP_1846/PP_1847 group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
* ? NC_002947 1241526 =24 (0.810)3 (0.110) 7/232 NT 12.6% intergenic (+12/‑80) PP_1080/grxD molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
?NC_002947 1241545 = 19 (0.680)intergenic (+31/‑61) PP_1080/grxD molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
* ? NC_002947 1273256 =24 (0.810)5 (0.190) 4/216 NT 20.0% intergenic (+41/+127) PP_1113/PP_1114 pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
?NC_002947 1273345 = 19 (0.730)intergenic (+130/+38) PP_1113/PP_1114 pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
* ? NC_002947 = 130541929 (0.980)7 (0.250) 4/236 NT 21.9% coding (904/924 nt) livH branched‑chain amino acid ABC transporter permease
?NC_002947 = 1305440 22 (0.780)coding (883/924 nt) livH branched‑chain amino acid ABC transporter permease
* ? NC_002947 = 136297815 (0.510)5 (0.180) 5/228 NT 22.3% intergenic (+15/‑336) phoQ/dctA‑I sensor protein/C4‑dicarboxylate transport protein
?NC_002947 = 1363010 21 (0.770)intergenic (+47/‑304) phoQ/dctA‑I sensor protein/C4‑dicarboxylate transport protein
* ? NC_002947 1392884 =26 (0.880)4 (0.190) 6/172 NT 19.5% intergenic (+48/‑138) PP_1214/ruvC transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
?NC_002947 1392984 = 15 (0.730)intergenic (+148/‑38) PP_1214/ruvC transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
* ? NC_002947 1399029 =31 (1.050)4 (0.140) 4/240 NT 13.1% coding (856/1302 nt) tolB Tol biopolymer transport system protein
?NC_002947 1399052 = 23 (0.800)coding (879/1302 nt) tolB Tol biopolymer transport system protein
* ? NC_002947 1484825 =24 (0.810)3 (0.110) 3/236 NT 10.9% coding (896/1179 nt) yhdX amino acid ABC transporter permease
?NC_002947 1484849 = 26 (0.920)coding (920/1179 nt) yhdX amino acid ABC transporter permease
* ? NC_002947 1487013 =31 (1.050)5 (0.220) 5/186 NT 22.0% intergenic (+22/+108) yhdZ/degS amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
?NC_002947 1487103 = 12 (0.540)intergenic (+112/+18) yhdZ/degS amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
* ? NC_002947 1499443 =27 (0.910)5 (0.210) 4/200 NT 19.6% intergenic (+13/‑153) trpS/zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
?NC_002947 1499526 = 19 (0.790)intergenic (+96/‑70) trpS/zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
* ? NC_002947 = 155927929 (0.980)4 (0.140) 4/230 NT 12.3% coding (811/1122 nt) PP_1370 group 1 family glycosyl transferase
?NC_002947 = 1559297 30 (1.090)coding (793/1122 nt) PP_1370 group 1 family glycosyl transferase
* ? NC_002947 = 157046820 (0.680)5 (0.220) 5/194 NT 21.9% intergenic (+34/‑154) pcaF‑I/pcaT beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
?NC_002947 = 1570494 20 (0.860)intergenic (+60/‑128) pcaF‑I/pcaT beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
* ? NC_002947 1577590 =31 (1.050)3 (0.110) 3/234 NT 8.9% coding (700/1455 nt) ttgC efflux pump outer membrane protein TtgC
?NC_002947 1577635 = 32 (1.140)coding (655/1455 nt) ttgC efflux pump outer membrane protein TtgC
* ? NC_002947 = 165708419 (0.640)4 (0.140) 4/230 NT 15.8% coding (1452/1698 nt) PP_1450 TPS family activation/secretion protein
?NC_002947 = 1657107 25 (0.910)coding (1429/1698 nt) PP_1450 TPS family activation/secretion protein
* ? NC_002947 1688164 =21 (0.710)4 (0.140) 4/234 NT 16.3% coding (382/912 nt) ydcU polyamine ABC transporter permease
?NC_002947 1688185 = 21 (0.750)coding (361/912 nt) ydcU polyamine ABC transporter permease
* ? NC_002947 1788780 =20 (0.680)3 (0.110) 3/234 NT 14.3% coding (211/756 nt) uppS (2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
?NC_002947 1788810 = 17 (0.610)coding (241/756 nt) uppS (2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
* ? NC_002947 1805898 =25 (0.850)5 (0.180) 4/236 NT 17.0% coding (1090/1284 nt) tilS tRNA lysidine(34) synthetase TilS
?NC_002947 1805928 = 25 (0.880)coding (1120/1284 nt) tilS tRNA lysidine(34) synthetase TilS
* ? NC_002947 = 181165345 (1.520)4 (0.140) 4/236 NT 7.7% coding (807/897 nt) PP_1615 LysR family transcriptional regulator
?NC_002947 = 1811699 53 (1.870)coding (761/897 nt) PP_1615 LysR family transcriptional regulator
* ? NC_002947 1833166 =35 (1.180)5 (0.170) 5/244 NT 11.4% coding (901/927 nt) PP_1637 LysR family transcriptional regulator
?NC_002947 1833195 = 43 (1.470)coding (872/927 nt) PP_1637 LysR family transcriptional regulator
* ? NC_002947 1852976 =39 (1.320)4 (0.140) 4/236 NT 10.0% coding (2020/2241 nt) relA ATP:GTP 3'‑pyrophosphotransferase
?NC_002947 1853007 = 35 (1.240)coding (2051/2241 nt) relA ATP:GTP 3'‑pyrophosphotransferase
* ? NC_002947 = 187518438 (1.290)4 (0.140) 4/236 NT 10.1% coding (401/567 nt) PP_1680 alpha‑ribazole‑5'‑phosphate phosphatase
?NC_002947 = 1875198 35 (1.240)coding (415/567 nt) PP_1680 alpha‑ribazole‑5'‑phosphate phosphatase
* ? NC_002947 1899249 =29 (0.980)5 (0.180) 4/226 NT 14.4% intergenic (+277/‑243) PP_t18/PP_1703 tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
?NC_002947 1899331 = 33 (1.220)intergenic (+359/‑161) PP_t18/PP_1703 tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
* ? NC_002947 = 189925833 (1.120)4 (0.150) 4/226 NT 11.2% intergenic (+286/‑234) PP_t18/PP_1703 tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
?NC_002947 = 1899320 33 (1.220)intergenic (+348/‑172) PP_t18/PP_1703 tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
* ? NC_002947 1928935 =42 (1.420)4 (0.140) 4/234 NT 9.6% coding (1199/2154 nt) PP_1728 membrane protein
?NC_002947 1928987 = 35 (1.250)coding (1147/2154 nt) PP_1728 membrane protein
* ? NC_002947 1982470 =27 (0.910)3 (0.110) 3/236 NT 10.5% coding (379/1434 nt) PP_1775 metallo‑beta‑lactamase family protein
?NC_002947 1982497 = 25 (0.880)coding (406/1434 nt) PP_1775 metallo‑beta‑lactamase family protein
* ? NC_002947 = 204885323 (0.780)4 (0.160) 3/212 NT 13.8% intergenic (+49/+90) PP_1821/PP_1822 glutathione S‑transferase family protein/hypothetical protein
?NC_002947 = 2048910 30 (1.180)intergenic (+106/+33) PP_1821/PP_1822 glutathione S‑transferase family protein/hypothetical protein
* ? NC_002947 = 206322727 (0.910)7 (0.300) 6/196 NT 23.9% intergenic (+41/‑166) PP_1838/PP_1839 membrane protein/hypothetical protein
?NC_002947 = 2063271 23 (0.980)intergenic (+85/‑122) PP_1838/PP_1839 membrane protein/hypothetical protein
* ? NC_002947 2086774 =NA (NA)4 (0.140) 4/230 NT NA coding (846/1302 nt) PP_1865 transposase
?NC_002947 2086805 = NA (NA)coding (877/1302 nt) PP_1865 transposase
* ? NC_002947 = 213751732 (1.080)4 (0.140) 4/234 NT 11.0% coding (334/624 nt) gstB glutathione S‑transferase
?NC_002947 = 2137523 34 (1.210)coding (340/624 nt) gstB glutathione S‑transferase
* ? NC_002947 = 220959836 (1.220)6 (0.220) 6/228 NT 14.4% coding (871/948 nt) PP_1952 metallo‑beta‑lactamase family protein
?NC_002947 = 2209615 38 (1.390)coding (888/948 nt) PP_1952 metallo‑beta‑lactamase family protein
* ? NC_002947 2295879 =21 (0.710)3 (0.110) 3/230 NT 9.0% intergenic (+82/+51) PP_5496/PP_2023 hypothetical protein/glutathione S‑transferase family protein
?NC_002947 4282196 = 41 (1.480)coding (1078/1089 nt) PP_3753 AraC family transcriptional regulator
* ? NC_002947 = 230356232 (1.080)3 (0.110) 3/230 NT 7.5% coding (1323/1632 nt) PP_2027 hypothetical protein
?NC_002947 = 2303589 44 (1.590)coding (1296/1632 nt) PP_2027 hypothetical protein
* ? NC_002947 2429928 =32 (1.080)6 (0.280) 6/180 NT 25.9% intergenic (+15/+98) PP_2129/PP_2130 hypothetical protein/lytic transglycosylase
?NC_002947 2430009 = 11 (0.510)intergenic (+96/+17) PP_2129/PP_2130 hypothetical protein/lytic transglycosylase
* ? NC_002947 2483907 =22 (0.740)4 (0.140) 4/232 NT 15.8% coding (730/1347 nt) puuA‑I glutamate‑putrescine ligase
?NC_002947 2483936 = 22 (0.790)coding (759/1347 nt) puuA‑I glutamate‑putrescine ligase
* ? NC_002947 2839511 =17 (0.580)4 (0.140) 4/236 NT 18.9% coding (55/825 nt) ecd flavoprotein
?NC_002947 2839537 = 18 (0.640)coding (29/825 nt) ecd flavoprotein
* ? NC_002947 = 288790629 (0.980)4 (0.140) 4/240 NT 13.1% coding (806/1425 nt) PP_2542 GntR family transcriptional regulator
?NC_002947 = 2887947 25 (0.870)coding (765/1425 nt) PP_2542 GntR family transcriptional regulator
* ? NC_002947 2930335 =21 (0.710)4 (0.140) 4/234 NT 17.4% coding (3810/4890 nt) PP_2566 leucine‑rich repeat‑containing protein
?NC_002947 2930359 = 18 (0.640)coding (3786/4890 nt) PP_2566 leucine‑rich repeat‑containing protein
* ? NC_002947 = 295712933 (1.120)5 (0.190) 4/216 NT 15.4% intergenic (+41/‑155) PP_2588/PP_2589 class III aminotransferase/aldehyde dehydrogenase family protein
?NC_002947 = 2957186 26 (1.000)intergenic (+98/‑98) PP_2588/PP_2589 class III aminotransferase/aldehyde dehydrogenase family protein
* ? NC_002947 = 300288214 (0.470)5 (0.180) 4/232 NT 26.9% coding (880/1464 nt) PP_2626 hypothetical protein
?NC_002947 = 3002888 14 (0.500)coding (886/1464 nt) PP_2626 hypothetical protein
* ? NC_002947 3057317 =36 (1.220)4 (0.140) 4/234 NT 10.5% coding (74/990 nt) PP_2669 outer membrane protein
?NC_002947 3057349 = 34 (1.210)coding (42/990 nt) PP_2669 outer membrane protein
* ? NC_002947 3295560 =21 (0.710)4 (0.140) 4/232 NT 15.7% coding (169/645 nt) PP_2895 hypothetical protein
?NC_002947 3295583 = 23 (0.830)coding (146/645 nt) PP_2895 hypothetical protein
* ? NC_002947 = 333747736 (1.220)3 (0.110) 3/234 NT 7.4% coding (638/1047 nt) PP_2934 hypothetical protein
?NC_002947 = 3337513 41 (1.460)coding (674/1047 nt) PP_2934 hypothetical protein
* ? NC_002947 3400633 =28 (0.950)5 (0.170) 5/244 NT 14.1% intergenic (‑21/+83) PP_3006/PP_3007 ECF family RNA polymerase sigma‑70 factor/hypothetical protein
?NC_002947 3400673 = 33 (1.130)intergenic (‑61/+43) PP_3006/PP_3007 ECF family RNA polymerase sigma‑70 factor/hypothetical protein
* ? NC_002947 3588140 =40 (1.350)6 (0.240) 6/206 NT 19.5% intergenic (+18/‑57) catA‑II/benE‑II catechol 1,2‑dioxygenase/benzoate transport protein
?NC_002947 3588208 = 16 (0.650)coding (12/1272 nt) benE‑II benzoate transport protein
* ? NC_002947 = 359594731 (1.050)5 (0.170) 5/238 NT 14.3% intergenic (‑462/+4) PP_3172/nemA group II intron‑encoding maturase/FMN‑linked N‑ethylmaleimide reductase
?NC_002947 = 4393488 NA (NA)intergenic (‑430/+40) PP_3868/PP_3869 group II intron‑encoding maturase/sheath protein
* ? NC_002947 3777873 =16 (0.540)4 (0.140) 4/232 NT 23.5% coding (884/2052 nt) PP_3340 TonB‑dependent receptor
?NC_002947 3777900 = 11 (0.390)coding (911/2052 nt) PP_3340 TonB‑dependent receptor
* ? NC_002947 3794011 =29 (0.980)4 (0.140) 4/230 NT 12.1% coding (555/1191 nt) PP_3355 beta‑ketothiolase
?NC_002947 3794035 = 31 (1.120)coding (531/1191 nt) PP_3355 beta‑ketothiolase
* ? NC_002947 3825042 =19 (0.640)3 (0.100) 3/240 NT 14.1% intergenic (‑38/+27) kguE/ptxS epimerase/2‑ketogluconate utilization repressor
?NC_002947 3825066 = 18 (0.620)intergenic (‑62/+3) kguE/ptxS epimerase/2‑ketogluconate utilization repressor
* ? NC_002947 3928383 =37 (1.250)5 (0.200) 5/212 NT 16.7% intergenic (+15/‑125) peaE/PP_3464 phenylacetaldehyde dehydrogenase/hypothetical protein
?NC_002947 3928464 = 18 (0.710)intergenic (+96/‑44) peaE/PP_3464 phenylacetaldehyde dehydrogenase/hypothetical protein
* ? NC_002947 3933475 =19 (0.640)5 (0.180) 4/232 NT 23.3% coding (46/1710 nt) PP_3466 ABC transporter permease/ATP‑binding protein
?NC_002947 3933493 = 15 (0.540)coding (28/1710 nt) PP_3466 ABC transporter permease/ATP‑binding protein
* ? NC_002947 3951114 =31 (1.050)4 (0.180) 3/190 NT 17.4% intergenic (‑34/+161) PP_3486/PP_3487 cytochrome c/hypothetical protein
?NC_002947 3951230 = 14 (0.610)intergenic (‑150/+45) PP_3486/PP_3487 cytochrome c/hypothetical protein
* ? NC_002947 4037820 =20 (0.680)5 (0.180) 4/236 NT 20.3% coding (588/1017 nt) PP_3558 amino acid ABC transporter substrate‑binding protein
?NC_002947 4037840 = 20 (0.710)coding (608/1017 nt) PP_3558 amino acid ABC transporter substrate‑binding protein
* ? NC_002947 = 416552521 (0.710)5 (0.180) 5/234 NT 20.0% coding (621/1335 nt) PP_3666 MHS family metabolite MFS transporter
?NC_002947 = 4165541 20 (0.710)coding (605/1335 nt) PP_3666 MHS family metabolite MFS transporter
* ? NC_002947 = 426659136 (1.220)6 (0.240) 6/212 NT 15.4% intergenic (‑89/+57) PP_3738/galP‑IV transcriptional regulator VanR/porin‑like protein
?NC_002947 = 4266628 35 (1.380)intergenic (‑126/+20) PP_3738/galP‑IV transcriptional regulator VanR/porin‑like protein
* ? NC_002947 = 426867629 (0.980)3 (0.110) 3/234 NT 12.1% coding (669/1341 nt) PP_3740 MFS transporter
?NC_002947 = 4268725 16 (0.570)coding (620/1341 nt) PP_3740 MFS transporter
* ? NC_002947 4282133 =33 (1.120)6 (0.220) 6/230 NT 14.3% intergenic (‑666/+52) PP_3751/PP_3753 cyanate transporter/AraC family transcriptional regulator
?NC_002947 4282196 = 41 (1.480)coding (1078/1089 nt) PP_3753 AraC family transcriptional regulator
* ? NC_002947 = 434432527 (0.910)6 (0.200) 5/246 NT 17.1% intergenic (+12/‑144) PP_3817/PP_3818 polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
?NC_002947 = 4344385 31 (1.050)intergenic (+72/‑84) PP_3817/PP_3818 polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
* ? NC_002947 4376055 =26 (0.880)4 (0.150) 4/224 NT 13.9% intergenic (‑43/+73) PP_3851/PP_3852 hypothetical protein/BNR domain‑containing protein
?NC_002947 4376085 = 26 (0.970)intergenic (‑73/+43) PP_3851/PP_3852 hypothetical protein/BNR domain‑containing protein
* ? NC_002947 = 445052850 (1.690)6 (0.210) 5/234 NT 12.1% coding (88/3564 nt) nicB nicotinate dehydrogenase subunit B
?NC_002947 = 4450543 40 (1.420)coding (103/3564 nt) nicB nicotinate dehydrogenase subunit B
* ? NC_002947 = 447126232 (1.080)3 (0.110) 3/236 NT 8.5% intergenic (‑29/‑865) PP_3961/PP_3962 transporter/hypothetical protein
?NC_002947 = 4471274 34 (1.200)intergenic (‑41/‑853) PP_3961/PP_3962 transporter/hypothetical protein
* ? NC_002947 = 458610016 (0.540)8 (0.390) 9/170 NT 40.0% intergenic (+139/+78) PP_4061/PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
?NC_002947 = 4586128 13 (0.640)intergenic (+167/+50) PP_4061/PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
* ? NC_002947 4593882 =47 (1.590)3 (0.140)
+36 bp		 3/174 NT 9.8% intergenic (+142/+157) mccA/PP_4068 methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
?NC_002947 = 5557913 31 (1.050)intergenic (‑233/+98) PP_4888/purA methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
* ? NC_002947 4647603 =29 (0.980)8 (0.400) 8/168 NT 37.4% intergenic (+10/+121) fusB/PP_4112 elongation factor G 2/sulfate transporter
?NC_002947 4647711 = 7 (0.350)intergenic (+118/+13) fusB/PP_4112 elongation factor G 2/sulfate transporter
* ? NC_002947 = 467242143 (1.460)3 (0.110) 3/232 NT 6.9% coding (34/363 nt) PP_4134 membrane protein
?NC_002947 = 4672447 41 (1.470)coding (8/363 nt)
coding (348/348 nt)		 PP_4134
PP_4135		 membrane protein
hypothetical protein
* ? NC_002947 = 469926128 (0.950)4 (0.140) 4/242 NT 12.4% coding (1473/2655 nt) kdpD sensor protein
?NC_002947 = 4699296 29 (1.000)coding (1438/2655 nt) kdpD sensor protein
* ? NC_002947 4808219 =0 (0.000)13 (0.620) 11/176 NT 55.3% intergenic (‑283/‑272) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
?NC_002947 = 5988991 21 (1.000)intergenic (+229/‑317) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? NC_002947 = 486119732 (1.080)9 (0.380) 5/196 NT 23.2% intergenic (‑103/+134) ligA/PP_4275 DNA ligase/cell division protein ZipA
?NC_002947 = 4861238 34 (1.450)intergenic (‑144/+93) ligA/PP_4275 DNA ligase/cell division protein ZipA
* ? NC_002947 4873089 =45 (1.520)4 (0.140) 4/236 NT 9.0% coding (576/693 nt) aqpZ aquaporin Z
?NC_002947 4873108 = 38 (1.340)coding (557/693 nt) aqpZ aquaporin Z
* ? NC_002947 4896423 =24 (0.810)7 (0.290) 7/204 NT 28.1% intergenic (+11/‑197) PP_4304/sbp‑I VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
?NC_002947 4896512 = 16 (0.650)intergenic (+100/‑108) PP_4304/sbp‑I VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
* ? NC_002947 = 489644321 (0.710)15 (0.610) 10/204 NT 47.3% intergenic (+31/‑177) PP_4304/sbp‑I VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
?NC_002947 = 4896490 16 (0.650)intergenic (+78/‑130) PP_4304/sbp‑I VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
* ? NC_002947 = 498725638 (1.290)4 (0.140) 4/244 NT 10.4% coding (169/468 nt) PP_4396 hypothetical protein
?NC_002947 = 4987290 31 (1.060)coding (203/468 nt) PP_4396 hypothetical protein
* ? NC_002947 = 508163643 (1.460)3 (0.100) 3/238 NT 7.2% intergenic (‑50/+53) lysC/alaS aspartokinase/alanine‑‑tRNA ligase
?NC_002947 = 5081683 36 (1.260)intergenic (‑97/+6) lysC/alaS aspartokinase/alanine‑‑tRNA ligase
* ? NC_002947 = 511643214 (0.470)3 (0.110) 3/230 NT 16.2% coding (532/594 nt) PP_4501 septation protein A
?NC_002947 = 5116448 18 (0.650)coding (548/594 nt) PP_4501 septation protein A
* ? NC_002947 5119634 =52 (1.760)4 (0.150) 4/216 NT 8.2% intergenic (+19/+112) PP_4505/PP_4506 sensor histidine kinase/nitroreductase family protein
?NC_002947 5119711 = 44 (1.700)intergenic (+96/+35) PP_4505/PP_4506 sensor histidine kinase/nitroreductase family protein
* ? NC_002947 = 512516043 (1.460)4 (0.170) 4/194 NT 9.8% intergenic (+86/‑96) PP_4511/PP_4512 AraC family transcriptional regulator/DMT superfamily permease
?NC_002947 = 5125187 40 (1.720)intergenic (+113/‑69) PP_4511/PP_4512 AraC family transcriptional regulator/DMT superfamily permease
* ? NC_002947 = 515982425 (0.850)9 (0.410) 7/184 NT 27.8% intergenic (+39/+67) PP_4542/PP_4543 ABC transporter ATP‑binding protein/permease/hypothetical protein
?NC_002947 = 5159839 28 (1.270)intergenic (+54/+52) PP_4542/PP_4543 ABC transporter ATP‑binding protein/permease/hypothetical protein
* ? NC_002947 5160427 =33 (1.120)4 (0.140) 4/230 NT 10.5% coding (676/1212 nt) PP_4543 hypothetical protein
?NC_002947 5160466 = 37 (1.340)coding (637/1212 nt) PP_4543 hypothetical protein
* ? NC_002947 5168706 =29 (0.980)4 (0.140) 4/236 NT 11.8% coding (276/1365 nt) PP_4547 glutamine synthetase
?NC_002947 5168744 = 32 (1.130)coding (314/1365 nt) PP_4547 glutamine synthetase
* ? NC_002947 = 519644021 (0.710)4 (0.150) 4/226 NT 17.3% coding (123/690 nt) ybgJ allophanate hydrolase subunit 1
?NC_002947 = 5196465 19 (0.700)coding (98/690 nt) ybgJ allophanate hydrolase subunit 1
* ? NC_002947 = 520045427 (0.910)5 (0.180) 4/232 NT 16.5% coding (597/774 nt) yafJ amidotransferase
?NC_002947 = 5200465 25 (0.900)coding (586/774 nt) yafJ amidotransferase
* ? NC_002947 5201627 =11 (0.370)5 (0.240) 4/172 NT 46.2% intergenic (‑65/‑115) PP_4582/PP_4583 membrane protein/putative Peptidase
?NC_002947 5201722 = 4 (0.190)intergenic (‑160/‑20) PP_4582/PP_4583 membrane protein/putative Peptidase
* ? NC_002947 = 520166310 (0.340)6 (0.290) 6/172 NT 52.2% intergenic (‑101/‑79) PP_4582/PP_4583 membrane protein/putative Peptidase
?NC_002947 = 5201684 4 (0.190)intergenic (‑122/‑58) PP_4582/PP_4583 membrane protein/putative Peptidase
* ? NC_002947 = 521028231 (1.050)6 (0.230) 6/214 NT 14.3% intergenic (‑100/+78) rnd/PP_4592 ribonuclease D/metal dependent hydrolase
?NC_002947 = 5210341 45 (1.750)intergenic (‑159/+19) rnd/PP_4592 ribonuclease D/metal dependent hydrolase
* ? NC_002947 = 533503122 (0.740)5 (0.170) 5/238 NT 17.2% coding (1413/2976 nt) PP_4695 two‑component system sensor histidine kinase
?NC_002947 = 5335072 27 (0.940)coding (1454/2976 nt) PP_4695 two‑component system sensor histidine kinase
* ? NC_002947 5355246 =36 (1.220)4 (0.140) 4/240 NT 10.1% coding (504/918 nt) truB tRNA pseudouridine(55) synthase TruB
?NC_002947 5355272 = 36 (1.250)coding (478/918 nt) truB tRNA pseudouridine(55) synthase TruB
* ? NC_002947 5378580 =37 (1.250)3 (0.100) 3/242 NT 7.0% coding (117/1674 nt) recN DNA repair/recombination protein
?NC_002947 5378624 = 43 (1.480)coding (161/1674 nt) recN DNA repair/recombination protein
* ? NC_002947 5418233 =38 (1.290)3 (0.110) 3/234 NT 7.6% coding (886/1368 nt) PP_4758 MFS transporter
?NC_002947 5418256 = 37 (1.320)coding (863/1368 nt) PP_4758 MFS transporter
* ? NC_002947 5455677 =24 (0.810)4 (0.150) 4/220 NT 15.9% intergenic (‑37/+98) PP_4792/PP_4793 hypothetical protein/hypothetical protein
?NC_002947 5455715 = 21 (0.800)intergenic (‑75/+60) PP_4792/PP_4793 hypothetical protein/hypothetical protein
* ? NC_002947 5485172 =37 (1.250)6 (0.260) 5/194 NT 17.9% intergenic (+30/‑117) purH/purD bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
?NC_002947 5485246 = 26 (1.120)intergenic (+104/‑43) purH/purD bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
* ? NC_002947 = 551331524 (0.810)6 (0.260) 5/194 NT 22.7% intergenic (+45/‑109) urtD/urtE ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
?NC_002947 = 5513371 22 (0.950)intergenic (+101/‑53) urtD/urtE ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
* ? NC_002947 = 553710538 (1.290)18 (0.780) 10/192 NT 37.7% intergenic (+34/+69) nadE/PP_4870 NH(3)‑dependent NAD(+) synthetase/azurin
?NC_002947 = 5537127 30 (1.300)intergenic (+56/+47) nadE/PP_4870 NH(3)‑dependent NAD(+) synthetase/azurin
* ? NC_002947 = 556046034 (1.150)5 (0.180) 5/234 NT 12.9% coding (88/1188 nt) hisZ ATP phosphoribosyltransferase regulatory subunit
?NC_002947 = 5560489 35 (1.250)coding (59/1188 nt) hisZ ATP phosphoribosyltransferase regulatory subunit
* ? NC_002947 = 557080932 (1.080)3 (0.110) 3/236 NT 8.4% coding (445/1065 nt) queG epoxyqueuosine reductase
?NC_002947 = 5570823 35 (1.240)coding (459/1065 nt) queG epoxyqueuosine reductase
* ? NC_002947 5594143 =14 (0.470)8 (0.350) 6/190 NT 37.4% intergenic (‑39/+106) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
?NC_002947 5594236 = 16 (0.700)intergenic (‑132/+13) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
* ? NC_002947 = 559417016 (0.540)6 (0.260) 5/190 NT 29.8% intergenic (‑66/+79) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
?NC_002947 = 5594207 16 (0.700)intergenic (‑103/+42) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
* ? NC_002947 = 559956638 (1.290)6 (0.210) 6/234 NT 14.1% coding (3967/5418 nt) PP_4924 subtilase family serine protease
?NC_002947 = 5599598 37 (1.320)coding (3935/5418 nt) PP_4924 subtilase family serine protease
* ? NC_002947 = 563246523 (0.780)3 (0.110) 3/236 NT 12.5% coding (1944/3954 nt) putA proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
?NC_002947 = 5632479 20 (0.710)coding (1958/3954 nt) putA proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
* ? NC_002947 = 567168922 (0.740)6 (0.250) 5/198 NT 22.8% intergenic (+57/‑113) PP_4978/PP_4979 hypothetical protein/substrate‑binding protein
?NC_002947 = 5671726 23 (0.970)intergenic (+94/‑76) PP_4978/PP_4979 hypothetical protein/substrate‑binding protein
* ? NC_002947 = 574340440 (1.350)9 (0.340) 6/220 NT 19.8% intergenic (‑181/+66) fbp/glgP class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
?NC_002947 = 5743432 37 (1.400)intergenic (‑209/+38) fbp/glgP class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
* ? NC_002947 = 574432536 (1.220)4 (0.140) 4/238 NT 11.0% coding (1596/2451 nt) glgP glycogen phosphorylase
?NC_002947 = 5744356 30 (1.050)coding (1565/2451 nt) glgP glycogen phosphorylase
* ? NC_002947 = 575614930 (1.020)4 (0.140) 3/238 NT 10.7% coding (1207/1437 nt) glnG two‑component system DNA‑binding response regulator GlnL/GlnG
?NC_002947 = 5756181 38 (1.330)coding (1239/1437 nt) glnG two‑component system DNA‑binding response regulator GlnL/GlnG
* ? NC_002947 5759460 =26 (0.880)5 (0.230) 4/182 NT 24.9% intergenic (+13/+143) trmL/secB tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
?NC_002947 5759552 = 11 (0.500)intergenic (+105/+51) trmL/secB tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
* ? NC_002947 = 578237338 (1.290)4 (0.140) 4/238 NT 10.4% coding (792/3309 nt) kefA intermediate mechanosensitive channel protein
?NC_002947 = 5782390 32 (1.120)coding (809/3309 nt) kefA intermediate mechanosensitive channel protein
* ? NC_002947 = 587034531 (1.050)5 (0.220) 5/188 NT 14.2% intergenic (+50/+84) PP_5144/ptsP hypothetical protein/phosphoenolpyruvate‑dependent regulator
?NC_002947 = 5870380 37 (1.640)intergenic (+85/+49) PP_5144/ptsP hypothetical protein/phosphoenolpyruvate‑dependent regulator
* ? NC_002947 5874604 =46 (1.560)4 (0.150) 4/224 NT 10.4% intergenic (‑40/+108) PP_5148/ilvA‑II membrane protein/threonine deaminase
?NC_002947 5874686 = 27 (1.000)intergenic (‑122/+26) PP_5148/ilvA‑II membrane protein/threonine deaminase
* ? NC_002947 = 587706334 (1.150)3 (0.130) 3/198 NT 8.4% intergenic (+29/+76) rpiA/PP_5151 ribose‑5‑phosphate isomerase A/hypothetical protein
?NC_002947 = 5877097 38 (1.600)intergenic (+63/+42) rpiA/PP_5151 ribose‑5‑phosphate isomerase A/hypothetical protein
* ? NC_002947 5897799 =40 (1.350)7 (0.300) 7/192 NT 22.2% intergenic (‑143/+91) PP_5172/PP_5173 hypothetical protein/RND family transporter
?NC_002947 5897875 = 18 (0.780)intergenic (‑219/+15) PP_5172/PP_5173 hypothetical protein/RND family transporter
* ? NC_002947 5914213 =21 (0.710)8 (0.350) 7/190 NT 39.8% intergenic (+49/+104) spuI/argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
?NC_002947 5914309 = 8 (0.350)intergenic (+145/+8) spuI/argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
* ? NC_002947 = 594525335 (1.180)4 (0.140) 4/238 NT 10.5% coding (346/969 nt) PP_5212 iron‑sulfur‑binding oxidoreductase
?NC_002947 = 5945286 34 (1.190)coding (313/969 nt) PP_5212 iron‑sulfur‑binding oxidoreductase
* ? NC_002947 5968466 =21 (0.710)4 (0.170) 4/202 NT 15.0% coding (162/360 nt) PP_5723 hypothetical protein
?NC_002947 5968570 = 28 (1.160)coding (58/360 nt) PP_5723 hypothetical protein
* ? NC_002947 = 597162915 (0.510)5 (0.180) 5/236 NT 24.8% coding (153/222 nt) PP_5237 hypothetical protein
?NC_002947 = 5971643 16 (0.560)coding (167/222 nt) PP_5237 hypothetical protein
* ? NC_002947 5980277 =45 (1.520)3 (0.110) 3/236 NT 6.9% coding (866/5049 nt) PP_5242 GAF domain‑containing sensor histidine kinase
?NC_002947 5980318 = 38 (1.340)coding (907/5049 nt) PP_5242 GAF domain‑containing sensor histidine kinase
* ? NC_002947 6000471 =41 (1.390)4 (0.140) 4/236 NT 9.4% coding (950/1428 nt) PP_5256 cyclic nucleotide‑binding protein
?NC_002947 6000489 = 38 (1.340)coding (968/1428 nt) PP_5256 cyclic nucleotide‑binding protein
* ? NC_002947 = 600098823 (0.780)3 (0.130) 3/186 NT 11.2% intergenic (+39/+70) PP_5256/amaA cyclic nucleotide‑binding protein/L‑pipecolate oxidase
?NC_002947 = 6001022 30 (1.350)intergenic (+73/+36) PP_5256/amaA cyclic nucleotide‑binding protein/L‑pipecolate oxidase
* ? NC_002947 6004770 =41 (1.390)4 (0.140) 4/236 NT 9.6% coding (643/891 nt) PP_5259 LysR family transcriptional regulator
?NC_002947 6004792 = 36 (1.270)coding (665/891 nt) PP_5259 LysR family transcriptional regulator
* ? NC_002947 = 601389121 (0.710)4 (0.170) 4/192 NT 20.3% intergenic (+40/+70) xpt/PP_5266 xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
?NC_002947 = 6013919 15 (0.650)intergenic (+68/+42) xpt/PP_5266 xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
* ? NC_002947 6032808 =24 (0.810)8 (0.370) 7/180 NT 36.8% intergenic (+16/+120) dppA‑IV/PP_5284 dipeptide transport protein/hypothetical protein
?NC_002947 6032890 = 10 (0.460)intergenic (+98/+38) dppA‑IV/PP_5284 dipeptide transport protein/hypothetical protein
* ? NC_002947 6063024 =47 (1.590)4 (0.140) 4/236 NT 8.1% intergenic (‑81/‑144) rubA/ubiC rubredoxin‑1/chorismate pyruvate‑lyase
?NC_002947 6063066 = 46 (1.620)intergenic (‑123/‑102) rubA/ubiC rubredoxin‑1/chorismate pyruvate‑lyase
* ? NC_002947 = 606302847 (1.590)4 (0.140) 4/236 NT 8.1% intergenic (‑85/‑140) rubA/ubiC rubredoxin‑1/chorismate pyruvate‑lyase
?NC_002947 = 6063060 46 (1.620)intergenic (‑117/‑108) rubA/ubiC rubredoxin‑1/chorismate pyruvate‑lyase
* ? NC_002947 = 611939135 (1.180)4 (0.140) 4/242 NT 10.7% intergenic (‑308/+91) PP_5368/PP_5370 MFS transporter/oxidoreductase‑like protein
?NC_002947 = 6119409 32 (1.100)intergenic (‑326/+73) PP_5368/PP_5370 MFS transporter/oxidoreductase‑like protein