mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,157,858 | +T | intergenic (+89/‑16) | yihS → / → gtsA | aldose‑ketose isomerase/mannose/glucose ABC transporter substrate‑binding protein |
| RA | 1,844,126 | Δ1 bp | coding (710/2754 nt) | gacS ← | sensor protein GacS |
| RA | 1,851,555 | T→A | L200Q (CTG→CAG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,273 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,275 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,277 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 176399 | NA (NA) | 44 (0.810) +CGAAA |
16/256 | 3.0 | 40.9% | intergenic (+43/‑420) | PP_5SA/PP_16SB | 5S ribosomal RNA/16S ribosomal RNA |
| ? | NC_002947 | = 182013 | 66 (1.180) | intergenic (+2/+63) | PP_5SB/PP_0160 | 5S ribosomal RNA/ferrioxamine receptor | |||||
| * | ? | NC_002947 | = 380858 | 33 (0.590) | 17 (0.370) | 14/220 | 2.8 | 34.6% | intergenic (+45/+64) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | = 380892 | 37 (0.800) | intergenic (+79/+30) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer | |||||
| * | ? | NC_002947 | = 652785 | 38 (0.680) | 34 (0.710) | 27/226 | 1.0 | 67.8% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | 744924 = | NA (NA) | 60 (1.070) | 44/266 | 0.4 | 93.8% | intergenic (‑586/+45) | PP_0636/PP_0637 | cold shock DNA‑binding domain‑containing protein/transposase |
| ? | NC_002947 | = 2218171 | 4 (0.070) | coding (47/828 nt) | PP_1958 | hypothetical protein | |||||
| * | ? | NC_002947 | = 746963 | NA (NA) | 60 (1.080) | 50/264 | 0.2 | 100% | intergenic (‑87/‑707) | PP_0638/PP_5448 | transposase/hypothetical protein |
| ? | NC_002947 | 2218163 = | 0 (0.000) | coding (55/828 nt) | PP_1958 | hypothetical protein | |||||
| * | ? | NC_002947 | 1499443 = | 26 (0.460) | 21 (0.450) | 14/220 | 2.8 | 57.1% | intergenic (+13/‑153) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | 1499526 = | 10 (0.220) | intergenic (+96/‑70) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
| * | ? | NC_002947 | = 1967220 | 18 (0.320) | 14 (0.330) | 12/200 | 2.9 | 46.3% | intergenic (+47/+72) | PP_1762/yciK | hypothetical protein/putative oxidoreductase |
| ? | NC_002947 | = 1967250 | 19 (0.450) | intergenic (+77/+42) | PP_1762/yciK | hypothetical protein/putative oxidoreductase | |||||
| * | ? | NC_002947 | = 4075786 | NA (NA) | 37 (0.700) | 29/252 | 1.1 | 100% | intergenic (‑328/+113) | PP_3586/tpx | transposase/2‑Cys peroxiredoxin |
| ? | NC_002947 | = 4957611 | 0 (0.000) | intergenic (‑49/+114) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein | |||||
| * | ? | NC_002947 | 4808219 = | 1 (0.020) | 31 (0.750) | 22/196 | 1.1 | 65.4% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 32 (0.770) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | 4957609 = | 0 (0.000) | 61 (1.110) | 40/260 | 0.5 | 100% | intergenic (‑47/+116) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein |
| ? | NC_002947 | 5222979 = | NA (NA) | intergenic (‑342/+37) | PP_4602/PP_4603 | AraC family transcriptional regulator/transposase | |||||
| * | ? | NC_002947 | = 5477178 | 23 (0.410) | 11 (0.280) | 11/184 | 2.8 | 33.9% | intergenic (+43/+69) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | = 5477195 | 27 (0.700) | intergenic (+60/+52) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
| * | ? | NC_002947 | 6006595 = | 26 (0.460) | 15 (0.370) | 14/194 | 2.3 | 58.9% | intergenic (+7/+92) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| ? | NC_002947 | 6006679 = | 2 (0.050) | intergenic (+91/+8) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||