mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,443,925 | G→T | P90T (CCG→ACG) | PP_1262 ← | LysR family transcriptional regulator |
| RA | 1,852,445 | C→T | R497W (CGG→TGG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,635,632 | A→T | M57K (ATG→AAG) | uvrY ← | BarA/UvrY two‑componenent system response regulator |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4075786 | NA (NA) | 69 (1.060) | 48/254 | 0.4 | 98.7% | intergenic (‑328/+113) | PP_3586/tpx | transposase/2‑Cys peroxiredoxin |
| ? | NC_002947 | = 4957611 | 1 (0.010) | intergenic (‑49/+114) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein | |||||
| * | ? | NC_002947 | = 4808224 | 6 (0.090) | 37 (0.590) | 27/244 | 1.9 | 47.0% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | 5988821 = | 78 (1.250) | intergenic (+59/‑487) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 4861197 | 66 (0.960) | 23 (0.410) | 20/218 | 2.5 | 29.6% | intergenic (‑103/+134) | ligA/PP_4275 | DNA ligase/cell division protein ZipA |
| ? | NC_002947 | = 4861238 | 56 (1.010) | intergenic (‑144/+93) | ligA/PP_4275 | DNA ligase/cell division protein ZipA | |||||
| * | ? | NC_002947 | 4957609 = | 1 (0.010) | 106 (1.580) | 71/262 | 0.0 | 99.1% | intergenic (‑47/+116) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein |
| ? | NC_002947 | 5222979 = | NA (NA) | intergenic (‑342/+37) | PP_4602/PP_4603 | AraC family transcriptional regulator/transposase | |||||
| * | ? | NC_002947 | 6006595 = | 46 (0.670) | 23 (0.460) | 18/196 | 2.4 | 48.6% | intergenic (+7/+92) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| ? | NC_002947 | 6006679 = | 15 (0.300) | intergenic (+91/+8) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||
| * | ? | NC_002947 | 6009165 = | 26 (0.380) | 22 (0.430) | 18/202 | 2.5 | 65.1% | intergenic (+6/+76) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| ? | NC_002947 | 6009242 = | 4 (0.080) | coding (1667/1668 nt) | PP_5263 | GGDEF domain‑containing protein | |||||
| * | ? | NC_002947 | = 6013891 | 57 (0.830) | 20 (0.370) | 18/214 | 2.8 | 29.3% | intergenic (+40/+70) | xpt/PP_5266 | xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein |
| ? | NC_002947 | = 6013919 | 51 (0.930) | intergenic (+68/+42) | xpt/PP_5266 | xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein | |||||