mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 195,559 | C→A | 20.5% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,628 | C→T | 13.7% | D378D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,629 | A→G | 14.6% | T379A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 39.0% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,306 | T→C | 35.3% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,327 | A→C | 38.7% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,351 | C→G | 40.2% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 40.1% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,032 | C→T | 7.7% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 16.1% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 27.8% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 326,067 | C→A | 22.4% | *556Y (TAG→TAT) | PP_0269 ← | glutamate synthase large subunit |
| RA | 326,070 | T→G | 21.9% | A555A (GCA→GCC) | PP_0269 ← | glutamate synthase large subunit |
| RA | 345,733 | G→T | 19.4% | L706M (CTG→ATG) | PP_0287 ← | hypothetical protein |
| RA | 432,015 | A→G | 15.4% | F101S (TTC→TCC) | PP_0354 ← | CBS domain‑containing protein |
| RA | 459,902 | C→T | 16.2% | intergenic (‑45/+34) | pqqB ← / ← pqqA | coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A |
| RA | 471,069 | T→C | 10.8% | intergenic (‑110/+18) | PP_0386 ← / ← rpoD | sensory box protein/RNA polymerase sigma 70 factor |
| RA | 471,070 | G→A | 10.8% | intergenic (‑111/+17) | PP_0386 ← / ← rpoD | sensory box protein/RNA polymerase sigma 70 factor |
| RA | 514,014 | G→T | 19.0% | intergenic (+45/+32) | yhfA → / ← PP_0426 | hypothetical protein/membrane protein |
| RA | 514,015 | A→C | 19.1% | intergenic (+46/+31) | yhfA → / ← PP_0426 | hypothetical protein/membrane protein |
| RA | 539,720 | C→T | 26.7% | R699C (CGT→TGT) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 550,552 | C→G | 24.1% | intergenic (+30/‑112) | tufB → / → rpsJ | elongation factor Tu‑B/30S ribosomal protein S10 |
| RA | 623,110 | C→A | 23.6% | intergenic (+59/+103) | PP_0535 → / ← PP_0536 | ferric siderophore receptor/hypothetical protein |
| RA | 690,514 | C→A | 15.2% | V42V (GTG→GTT) | PP_0591 ← | adenosine deaminase |
| RA | 697,217 | T→C | 20.0% | intergenic (+141/‑610) | mmsA‑I → / → PP_16SD | methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA |
| RA | 697,228 | C→G | 19.0% | intergenic (+152/‑599) | mmsA‑I → / → PP_16SD | methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA |
| RA | 697,231 | C→G | 20.4% | intergenic (+155/‑596) | mmsA‑I → / → PP_16SD | methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA |
| RA | 865,406 | G→T | 26.6% | A141A (GCC→GCA) | upp ← | uracil phosphoribosyltransferase |
| RA | 865,409 | A→C | 23.5% | V140V (GTT→GTG) | upp ← | uracil phosphoribosyltransferase |
| RA | 937,766 | A→T | 13.2% | L2620Q (CTG→CAG) | PP_0806 ← | surface adhesion protein |
| RA | 937,771 | A→T | 13.2% | A2618A (GCT→GCA) | PP_0806 ← | surface adhesion protein |
| RA | 1,004,529 | A→T | 13.2% | Q184L (CAG→CTG) | PP_0866 → | transmembrane sensor |
| RA | 1,057,080:1 | +C | 18.2% | coding (995/2082 nt) | PP_0914 ← | GGDEF domain‑containing protein |
| RA | 1,057,081 | G→A | 18.1% | L332L (CTG→TTG) | PP_0914 ← | GGDEF domain‑containing protein |
| RA | 1,145,439 | C→T | 19.7% | intergenic (‑100/+41) | hemO ← / ← PP_1006 | heme oxygenase/heme receptor |
| RA | 1,145,446 | G→A | 17.3% | intergenic (‑107/+34) | hemO ← / ← PP_1006 | heme oxygenase/heme receptor |
| RA | 1,145,447 | T→C | 16.6% | intergenic (‑108/+33) | hemO ← / ← PP_1006 | heme oxygenase/heme receptor |
| RA | 1,165,388 | A→G | 45.3% | I8T (ATC→ACC) | hexR ← | DNA‑binding transcriptional regulator |
| RA | 1,169,311 | T→C | 14.0% | I369V (ATC→GTC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 1,169,312 | G→A | 14.0% | D368D (GAC→GAT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 1,219,480 | C→T | 16.0% | S337S (AGC→AGT) | PP_1064 → | alpha/beta family hydrolase |
| RA | 1,299,783 | T→C | 14.8% | Q134R (CAG→CGG) ‡ | PP_1134 ← | hypothetical protein |
| RA | 1,299,784 | G→A | 14.8% | Q134* (CAG→TAG) ‡ | PP_1134 ← | hypothetical protein |
| RA | 1,315,094 | C→A | 13.8% | A94A (GCC→GCA) | PP_1146 → | hypothetical protein |
| RA | 1,362,915 | T→A | 12.1% | D433E (GAT→GAA) | phoQ → | sensor protein |
| RA | 1,390,853 | C→A | 23.5% | C218* (TGC→TGA) | aspS → | aspartate‑‑tRNA ligase |
| RA | 1,415,900 | T→C | 11.5% | G88G (GGT→GGC) | PP_1238 → | lipoprotein |
| RA | 1,415,901 | G→A | 11.2% | A89T (GCC→ACC) | PP_1238 → | lipoprotein |
| RA | 1,435,822 | A→T | 28.1% | L50Q (CTG→CAG) | PP_1256 ← | alpha‑ketoglutarate semialdehyde dehydrogenase |
| RA | 1,435,829 | A→T | 28.1% | C48S (TGC→AGC) | PP_1256 ← | alpha‑ketoglutarate semialdehyde dehydrogenase |
| RA | 1,453,565 | C→A | 23.5% | P64P (CCC→CCA) | PP_1272 → | multidrug MFS transporter membrane fusion protein |
| RA | 1,592,024 | C→A | 18.7% | intergenic (‑89/‑114) | PP_1395 ← / → PP_1396 | AraC family transcriptional regulator/hypothetical protein |
| RA | 1,592,029 | T→G | 18.8% | intergenic (‑94/‑109) | PP_1395 ← / → PP_1396 | AraC family transcriptional regulator/hypothetical protein |
| RA | 1,606,449 | A→T | 16.1% | intergenic (‑157/+54) | PP_1407 ← / ← PP_t64 | sulfate transporter/tRNA‑Gly |
| RA | 1,606,450 | A→T | 16.1% | intergenic (‑158/+53) | PP_1407 ← / ← PP_t64 | sulfate transporter/tRNA‑Gly |
| RA | 1,637,378 | G→A | 14.8% | intergenic (+45/+21) | pdxJ → / ← PP_1437 | pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase |
| RA | 1,649,375 | T→G | 17.3% | E576A (GAG→GCG) ‡ | PP_1446 ← | TonB‑dependent receptor |
| RA | 1,649,376 | C→A | 17.3% | E576* (GAG→TAG) ‡ | PP_1446 ← | TonB‑dependent receptor |
| RA | 1,703,294:1 | +T | 17.5% | intergenic (+101/‑66) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| RA | 1,744,949 | T→C | 11.1% | intergenic (‑33/+308) | PP_1542 ← / ← PP_1543 | hypothetical protein/hypothetical protein |
| RA | 1,787,945 | T→C | 12.9% | L230P (CTG→CCG) | pyrH → | uridylate kinase |
| RA | 1,851,651 | G→T | 25.0% | R232L (CGG→CTG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 1,851,740 | G→T | 63.6% | G262C (GGC→TGC) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 1,852,445 | C→T | 18.5% | R497W (CGG→TGG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 1,932,783 | C→A | 39.2% | L66L (CTG→CTT) | minE ← | cell division topological specificity factor |
| RA | 1,944,672 | A→G | 26.7% | intergenic (+130/+132) | actP‑I → / ← PP_1744 | acetate permease/hypothetical protein |
| RA | 1,968,703 | C→A | 10.8% | M53I (ATG→ATT) | gph ← | phosphoglycolate phosphatase |
| RA | 1,978,751 | C→G | 22.2% | F45L (TTC→TTG) | cmk → | cytidylate kinase |
| RA | 2,081,155 | G→T | 20.9% | intergenic (+30/+85) | efp → / ← ohr | elongation factor P/organic hydroperoxide resistance protein |
| RA | 2,081,156 | C→T | 20.5% | intergenic (+31/+84) | efp → / ← ohr | elongation factor P/organic hydroperoxide resistance protein |
| RA | 2,081,157 | A→G | 20.7% | intergenic (+32/+83) | efp → / ← ohr | elongation factor P/organic hydroperoxide resistance protein |
| RA | 2,081,158 | A→C | 20.7% | intergenic (+33/+82) | efp → / ← ohr | elongation factor P/organic hydroperoxide resistance protein |
| RA | 2,144,374 | G→T | 21.4% | G227V (GGC→GTC) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 2,144,383 | G→C | 14.8% | R230P (CGT→CCT) ‡ | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 2,144,384 | T→G | 15.6% | R230R (CGT→CGG) ‡ | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 2,144,392 | A→C | 22.3% | D233A (GAC→GCC) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 2,272,650 | G→A | 23.6% | V172M (GTG→ATG) | PP_2003 → | hypothetical protein |
| RA | 2,282,813 | T→G | 49.7% | intergenic (‑162/+67) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,282,817 | G→C | 52.9% | intergenic (‑166/+63) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,282,818 | G→C | 52.9% | intergenic (‑167/+62) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,282,822 | C→A | 53.0% | intergenic (‑171/+58) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,335,490 | T→C | 15.4% | E337G (GAG→GGG) | PP_2052 ← | bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase |
| RA | 2,335,493 | G→A | 14.9% | P336L (CCC→CTC) | PP_2052 ← | bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase |
| RA | 2,402,351 | A→T | 15.7% | L20Q (CTG→CAG) | PP_2103 ← | hypothetical protein |
| RA | 2,402,354 | A→T | 19.2% | L19Q (CTG→CAG) | PP_2103 ← | hypothetical protein |
| RA | 2,402,360 | Δ1 bp | 22.9% | coding (50/330 nt) | PP_2103 ← | hypothetical protein |
| RA | 2,508,883 | A→G | 12.9% | V92A (GTG→GCG) | PP_2203 ← | hypothetical protein |
| RA | 2,568,736 | T→A | 13.3% | Q285H (CAA→CAT) | PP_2252 ← | hypothetical protein |
| RA | 2,568,739 | T→G | 13.4% | E284D (GAA→GAC) | PP_2252 ← | hypothetical protein |
| RA | 2,568,744 | C→A | 12.5% | V283F (GTC→TTC) | PP_2252 ← | hypothetical protein |
| RA | 2,568,747 | T→A | 12.4% | M282L (ATG→TTG) | PP_2252 ← | hypothetical protein |
| RA | 2,615,985 | G→A | 21.1% | D37N (GAC→AAC) ‡ | PP_2288 → | tail fiber protein |
| RA | 2,615,986 | A→C | 22.6% | D37A (GAC→GCC) ‡ | PP_2288 → | tail fiber protein |
| RA | 2,615,990 | A→T | 22.6% | T38T (ACA→ACT) | PP_2288 → | tail fiber protein |
| RA | 2,615,994 | G→T | 24.9% | V40F (GTC→TTC) ‡ | PP_2288 → | tail fiber protein |
| RA | 2,615,995 | T→C | 25.0% | V40A (GTC→GCC) ‡ | PP_2288 → | tail fiber protein |
| RA | 2,820,638:1 | +T | 33.3% | intergenic (+396/+116) | PP_2473 → / ← PP_2474 | hypothetical protein/glutathione S‑transferase family protein |
| RA | 2,820,642 | Δ1 bp | 35.3% | intergenic (+400/+112) | PP_2473 → / ← PP_2474 | hypothetical protein/glutathione S‑transferase family protein |
| RA | 2,861,170 | G→T | 15.4% | Q69K (CAG→AAG) | gllD ← | 4‑oxalomesaconate tautomerase |
| RA | 2,897,767 | T→A | 26.7% | intergenic (+98/‑52) | PP_2551 → / → PP_2552 | LysR family transcriptional regulator/DOPA decarboxylase |
| RA | 2,897,768 | T→A | 26.7% | intergenic (+99/‑51) | PP_2551 → / → PP_2552 | LysR family transcriptional regulator/DOPA decarboxylase |
| RA | 2,951,377 | G→C | 9.8% | intergenic (‑113/+48) | oguA ← / ← PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
| RA | 2,951,384 | A→C | 10.0% | intergenic (‑120/+41) | oguA ← / ← PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
| RA | 2,951,385 | G→T | 10.0% | intergenic (‑121/+40) | oguA ← / ← PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
| RA | 2,951,392 | G→C | 10.0% | intergenic (‑128/+33) | oguA ← / ← PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
| RA | 3,030,404 | C→G | 20.1% | intergenic (+361/‑333) | pcaY → / → mgtA | aromatic acid chemoreceptor/ATP‑dependent magnesium transporter |
| RA | 3,030,407 | C→G | 20.0% | intergenic (+364/‑330) | pcaY → / → mgtA | aromatic acid chemoreceptor/ATP‑dependent magnesium transporter |
| RA | 3,041,016 | A→C | 22.3% | Q192H (CAA→CAC) | PP_2652 → | hydratase/decarboxylase |
| RA | 3,041,027 | G→T | 22.3% | G196V (GGT→GTT) | PP_2652 → | hydratase/decarboxylase |
| RA | 3,057,001:1 | +A | 20.0% | coding (390/990 nt) | PP_2669 ← | outer membrane protein |
| RA | 3,057,006 | Δ1 bp | 20.0% | coding (385/990 nt) | PP_2669 ← | outer membrane protein |
| RA | 3,319,181 | G→A | 13.2% | intergenic (‑102/+90) | treSA ← / ← PP_2919 | trehalose synthase A/LysR family transcriptional regulator |
| RA | 3,344,389 | C→G | 23.6% | Q261H (CAG→CAC) | PP_2941 ← | hypothetical protein |
| RA | 3,396,949 | C→A | 16.6% | L206M (CTG→ATG) ‡ | PP_3001 → | CAIB/BAIF family protein |
| RA | 3,396,950 | T→G | 15.4% | L206R (CTG→CGG) ‡ | PP_3001 → | CAIB/BAIF family protein |
| RA | 3,423,575 | C→G | 14.3% | P564A (CCA→GCA) | PP_3038 → | TraC domain‑containing protein |
| RA | 3,429,067 | C→T | 12.9% | S244S (AGC→AGT) | PP_3044 → | lambda family portal protein |
| RA | 3,453,523 | A→G | 23.4% | intergenic (‑34/+79) | PP_3069 ← / ← ppiC‑I | outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C |
| RA | 3,472,028 | C→A | 11.5% | D183Y (GAC→TAC) | PP_3084 ← | ferric siderophore receptor |
| RA | 3,533,716 | T→G | 16.6% | I117M (ATT→ATG) | atoA → | 3‑oxoacid CoA‑transferase subunit A |
| RA | 3,584,941 | G→T | 28.9% | intergenic (+45/‑90) | benC → / → benD | benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase |
| RA | 3,584,942 | A→C | 31.2% | intergenic (+46/‑89) | benC → / → benD | benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase |
| RA | 3,652,204 | G→C | 16.6% | G16A (GGC→GCC) | PP_3218 → | NtaA/SnaA/SoxA family monooxygenase |
| RA | 3,652,217 | G→C | 20.5% | R20R (CGG→CGC) | PP_3218 → | NtaA/SnaA/SoxA family monooxygenase |
| RA | 3,697,127 | C→G | 15.4% | W135C (TGG→TGC) | PP_5595 ← | hypothetical protein |
| RA | 3,700,170 | C→A | 16.0% | G106C (GGC→TGC) | ybhP‑I ← | phosphohydrolase |
| RA | 3,700,551 | C→A | 19.8% | L328F (TTG→TTT) | PP_3266 ← | hypothetical protein |
| RA | 3,704,938 | A→G | 14.3% | F369F (TTT→TTC) | paaZ ← | bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 3,723,352 | C→T | 24.4% | A189V (GCC→GTC) | PP_3288 → | universal stress protein family protein |
| RA | 3,762,580:1 | +G | 23.5% | coding (1885/2091 nt) | PP_3325 → | ferric siderophore receptor |
| RA | 3,762,587 | A→T | 23.5% | Q631L (CAG→CTG) | PP_3325 → | ferric siderophore receptor |
| RA | 3,800,887 | C→T | 26.3% | intergenic (+54/+25) | PP_3360 → / ← PP_3361 | membrane protein/aminotransferase |
| RA | 3,812,702 | A→G | 18.2% | D328G (GAC→GGC) | PP_3368 → | MFS transporter |
| RA | 3,812,705 | T→A | 18.2% | I329N (ATT→AAT) | PP_3368 → | MFS transporter |
| RA | 3,812,708 | C→T | 18.2% | A330V (GCC→GTC) | PP_3368 → | MFS transporter |
| RA | 3,853,162 | T→A | 25.7% | I169N (ATT→AAT) | alkB → | alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase |
| RA | 3,920,314 | A→G | 18.6% | L499P (CTG→CCG) | acs ← | acyl‑CoA synthetase |
| RA | 3,920,317 | C→T | 19.2% | R498Q (CGG→CAG) | acs ← | acyl‑CoA synthetase |
| RA | 3,990,126 | C→T | 10.8% | Q123* (CAG→TAG) | PP_3516 → | AraC family transcriptional regulator |
| RA | 4,002,532 | G→A | 17.4% | V224V (GTG→GTA) | allE → | S‑ureidoglycine aminohydrolase |
| RA | 4,002,533 | T→C | 17.4% | Y225H (TAC→CAC) | allE → | S‑ureidoglycine aminohydrolase |
| RA | 4,049,951 | A→G | 23.5% | intergenic (+40/‑61) | quiA → / → oprB‑III | quinate dehydrogenase/carbohydrate‑selective porin |
| RA | 4,049,954 | C→G | 25.0% | intergenic (+43/‑58) | quiA → / → oprB‑III | quinate dehydrogenase/carbohydrate‑selective porin |
| RA | 4,049,957 | C→T | 25.0% | intergenic (+46/‑55) | quiA → / → oprB‑III | quinate dehydrogenase/carbohydrate‑selective porin |
| RA | 4,073,653 | G→A | 13.8% | intergenic (‑147/+477) | mdtA ← / ← PP_3586 | multidrug transporter membrane fusion protein/transposase |
| RA | 4,073,654 | T→C | 13.8% | intergenic (‑148/+476) | mdtA ← / ← PP_3586 | multidrug transporter membrane fusion protein/transposase |
| RA | 4,080,963 | A→T | 17.4% | intergenic (‑143/+20) | amaC ← / ← dpkA | D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase |
| RA | 4,080,964 | A→T | 16.9% | intergenic (‑144/+19) | amaC ← / ← dpkA | D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase |
| RA | 4,091,493 | A→C | 20.0% | N20H (AAC→CAC) | garD → | galactarate dehydratase |
| RA | 4,091,497 | T→A | 20.6% | V21D (GTC→GAC) | garD → | galactarate dehydratase |
| RA | 4,091,501 | G→T | 17.5% | V22V (GTG→GTT) | garD → | galactarate dehydratase |
| RA | 4,119,525 | T→G | 16.0% | V724G (GTG→GGG) | PP_3622 → | isoquinoline 1‑oxidoreductase subunit beta |
| RA | 4,119,530 | C→A | 16.0% | P726T (CCG→ACG) | PP_3622 → | isoquinoline 1‑oxidoreductase subunit beta |
| RA | 4,159,109 | T→C | 13.3% | intergenic (+13/‑196) | PP_3661 → / → PP_3662 | membrane protein/hypothetical protein |
| RA | 4,159,110 | C→T | 13.3% | intergenic (+14/‑195) | PP_3661 → / → PP_3662 | membrane protein/hypothetical protein |
| RA | 4,159,112 | G→C | 13.8% | intergenic (+16/‑193) | PP_3661 → / → PP_3662 | membrane protein/hypothetical protein |
| RA | 4,159,126 | A→G | 16.9% | intergenic (+30/‑179) | PP_3661 → / → PP_3662 | membrane protein/hypothetical protein |
| RA | 4,159,147 | T→C | 14.8% | intergenic (+51/‑158) | PP_3661 → / → PP_3662 | membrane protein/hypothetical protein |
| RA | 4,159,187 | C→T | 14.3% | intergenic (+91/‑118) | PP_3661 → / → PP_3662 | membrane protein/hypothetical protein |
| RA | 4,170,224 | T→G | 25.7% | intergenic (‑288/‑99) | katG ← / → PP_3669 | catalase‑peroxidase/LysR family transcriptional regulator |
| RA | 4,170,226 | A→T | 27.1% | intergenic (‑290/‑97) | katG ← / → PP_3669 | catalase‑peroxidase/LysR family transcriptional regulator |
| RA | 4,170,227 | A→T | 27.3% | intergenic (‑291/‑96) | katG ← / → PP_3669 | catalase‑peroxidase/LysR family transcriptional regulator |
| RA | 4,170,229 | C→A | 25.7% | intergenic (‑293/‑94) | katG ← / → PP_3669 | catalase‑peroxidase/LysR family transcriptional regulator |
| RA | 4,244,402 | G→C | 16.0% | S221R (AGC→AGG) | aruH ← | arginine‑‑pyruvate transaminase AruH |
| RA | 4,272,817 | G→A | 12.5% | V23I (GTC→ATC) | PP_3743 → | hypothetical protein |
| RA | 4,272,822 | T→C | 11.8% | D24D (GAT→GAC) | PP_3743 → | hypothetical protein |
| RA | 4,301,621 | G→C | 25.1% | intergenic (+67/‑1233) | PP_3774 → / → PP_5627 | hypothetical protein/hypothetical protein |
| RA | 4,301,623 | G→C | 25.8% | intergenic (+69/‑1231) | PP_3774 → / → PP_5627 | hypothetical protein/hypothetical protein |
| RA | 4,316,702 | C→T | 23.5% | H247H (CAC→CAT) | PP_3788 → | non‑ribosomal peptide synthetase |
| RA | 4,333,149 | C→A | 14.8% | intergenic (+45/+39) | PP_3804 → / ← yaiW | hypothetical protein/lipoprotein |
| RA | 4,333,156 | A→T | 15.0% | intergenic (+52/+32) | PP_3804 → / ← yaiW | hypothetical protein/lipoprotein |
| RA | 4,333,157 | A→T | 15.3% | intergenic (+53/+31) | PP_3804 → / ← yaiW | hypothetical protein/lipoprotein |
| RA | 4,338,537 | A→T | 13.4% | intergenic (+113/+29) | PP_3812 → / ← PP_5632 | lipase/allo‑isoleucine metabolism protein |
| RA | 4,338,538 | A→T | 13.3% | intergenic (+114/+28) | PP_3812 → / ← PP_5632 | lipase/allo‑isoleucine metabolism protein |
| RA | 4,338,740 | C→T | 10.8% | G40G (GGG→GGA) | PP_5632 ← | allo‑isoleucine metabolism protein |
| RA | 4,348,749 | A→G | 52.4% | intergenic (‑70/+404) | PP_3820 ← / ← galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,385,076 | G→A | 23.6% | G168G (GGC→GGT) | PP_3860 ← | FluMu protein gp47 |
| RA | 4,399,566 | A→T | 12.1% | I123N (ATT→AAT) | PP_3878 ← | minor capsid protein C |
| RA | 4,399,571 | T→C | 12.5% | E121E (GAA→GAG) | PP_3878 ← | minor capsid protein C |
| RA | 4,512,506 | C→A | 33.3% | G9V (GGT→GTT) | lolA ← | outer membrane lipoprotein carrier protein |
| RA | 4,512,509 | T→G | 33.3% | N8T (AAC→ACC) | lolA ← | outer membrane lipoprotein carrier protein |
| RA | 4,570,431 | T→C | 11.1% | L84P (CTG→CCG) | treY → | maltooligosyl trehalose synthase |
| RA | 4,635,632 | A→T | 100% | M57K (ATG→AAG) | uvrY ← | BarA/UvrY two‑componenent system response regulator |
| RA | 4,741,273:1 | +C | 64.3% | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,275 | A→G | 64.1% | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,277 | C→T | 100% | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | 100% | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | 100% | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | 100% | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298:1 | +T | 53.8% | intergenic (+489/+263) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,299 | C→T | 42.6% | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,301 | A→C | 46.0% | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,302 | A→G | 53.9% | intergenic (+493/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,304 | C→G | 46.1% | intergenic (+495/+257) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,305 | Δ1 bp | 53.8% | intergenic (+496/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,775,005 | C→A | 13.8% | R1436L (CGC→CTC) | pvdD ← | non‑ribosomal peptide synthetase |
| RA | 4,778,393 | G→A | 21.0% | Q307* (CAG→TAG) | pvdD ← | non‑ribosomal peptide synthetase |
| RA | 4,796,649 | A→G | 28.7% | intergenic (‑162/+56) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,796,657 | C→T | 40.0% | intergenic (‑170/+48) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,796,659 | G→C | 40.3% | intergenic (‑172/+46) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,796,662 | G→C | 37.7% | intergenic (‑175/+43) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,796,664 | A→G | 42.9% | intergenic (‑177/+41) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,796,672 | C→T | 42.6% | intergenic (‑185/+33) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,804,688 | T→C | 17.4% | D142G (GAC→GGC) | PP_4233 ← | oxidoreductase small subunit |
| RA | 4,842,941 | Δ1 bp | 21.7% | intergenic (+40/‑257) | ccoP‑II → / → PP_4259 | cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein |
| RA | 4,842,949:1 | +G | 19.2% | intergenic (+48/‑249) | ccoP‑II → / → PP_4259 | cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein |
| RA | 4,896,422 | C→T | 10.8% | intergenic (+10/‑198) | PP_4304 → / → sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| RA | 4,904,699 | C→G | 15.2% | L60F (TTG→TTC) | PP_4312 ← | hypothetical protein |
| RA | 4,936,585 | A→G | 21.0% | L17P (CTC→CCC) | flhA ← | flagellar export pore protein |
| RA | 4,936,588 | C→T | 21.1% | G16E (GGG→GAG) | flhA ← | flagellar export pore protein |
| RA | 4,951,017 | T→G | 42.4% | intergenic (‑122/+35) | fliL ← / ← fliK | flagellar protein FliL/flagellar hook‑length control protein FliK |
| RA | 4,951,018 | C→A | 33.5% | intergenic (‑123/+34) | fliL ← / ← fliK | flagellar protein FliL/flagellar hook‑length control protein FliK |
| RA | 4,989,572 | C→A | 15.4% | G79C (GGT→TGT) | PP_4398 ← | MFS transporter |
| RA | 5,027,863 | C→A | 14.2% | A28D (GCT→GAT) | PP_4432 → | Xaa‑Pro aminopeptidase |
| RA | 5,182,107 | G→T | 32.9% | intergenic (‑117/+37) | PP_4560 ← / ← csbD | ribonuclease BN/stress response protein |
| RA | 5,182,113 | T→G | 33.3% | intergenic (‑123/+31) | PP_4560 ← / ← csbD | ribonuclease BN/stress response protein |
| RA | 5,182,114 | C→A | 33.3% | intergenic (‑124/+30) | PP_4560 ← / ← csbD | ribonuclease BN/stress response protein |
| RA | 5,229,239 | Δ1 bp | 19.2% | intergenic (‑133/+43) | PP_4606 ← / ← PP_4607 | ferric siderophore receptor/transmembrane sensor |
| RA | 5,229,243 | C→G | 19.2% | intergenic (‑137/+39) | PP_4606 ← / ← PP_4607 | ferric siderophore receptor/transmembrane sensor |
| RA | 5,229,246 | C→G | 19.2% | intergenic (‑140/+36) | PP_4606 ← / ← PP_4607 | ferric siderophore receptor/transmembrane sensor |
| RA | 5,229,249:1 | +C | 22.7% | intergenic (‑143/+33) | PP_4606 ← / ← PP_4607 | ferric siderophore receptor/transmembrane sensor |
| RA | 5,257,199 | C→T | 20.0% | Q217Q (CAG→CAA) | PP_4634 ← | alpha/beta family hydrolase |
| RA | 5,314,956 | A→G | 11.8% | S36P (TCA→CCA) | msrP ← | methionine sulfoxide reductase catalytic subunit |
| RA | 5,346,315 | C→A | 14.7% | V555V (GTC→GTA) | acsA‑II → | acetyl‑CoA synthetase |
| RA | 5,346,316 | T→G | 14.7% | Y556D (TAC→GAC) | acsA‑II → | acetyl‑CoA synthetase |
| RA | 5,445,697 | G→T | 16.7% | R202L (CGC→CTC) | thiD → | phosphomethylpyrimidine kinase |
| RA | 5,550,709 | T→A | 20.0% | S301S (TCT→TCA) | PP_4881 → | iron ABC transporter substrate‑binding protein |
| RA | 5,550,711 | A→G | 20.1% | D302G (GAC→GGC) | PP_4881 → | iron ABC transporter substrate‑binding protein |
| RA | 5,550,718 | C→T | 21.1% | G304G (GGC→GGT) | PP_4881 → | iron ABC transporter substrate‑binding protein |
| RA | 5,550,720 | T→A | 21.1% | L305Q (CTG→CAG) | PP_4881 → | iron ABC transporter substrate‑binding protein |
| RA | 5,565,016 | C→A | 13.7% | A207A (GCG→GCT) | miaA ← | tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA |
| RA | 5,651,560 | C→A | 19.1% | E321* (GAA→TAA) | fba ← | fructose‑bisphosphate aldolase |
| RA | 5,685,956 | G→C | 17.3% | P331P (CCC→CCG) ‡ | PP_4988 ← | signal transduction histidine kinase CheA/CheY‑like receiver |
| RA | 5,685,958 | G→C | 17.2% | P331A (CCC→GCC) ‡ | PP_4988 ← | signal transduction histidine kinase CheA/CheY‑like receiver |
| RA | 5,829,231 | C→G | 14.8% | A272P (GCA→CCA) | ftsX ← | cell division protein FtsX |
| RA | 5,857,758 | A→C | 11.2% | E84A (GAG→GCG) | PP_5134 → | hypothetical protein |
| RA | 5,890,847 | A→C | 28.1% | intergenic (+79/+41) | PP_5164 → / ← plpB | penicillin amidase family protein/NLPA lipoprotein |
| RA | 5,890,848 | A→T | 24.0% | intergenic (+80/+40) | PP_5164 → / ← plpB | penicillin amidase family protein/NLPA lipoprotein |
| RA | 5,890,849 | G→T | 27.3% | intergenic (+81/+39) | PP_5164 → / ← plpB | penicillin amidase family protein/NLPA lipoprotein |
| RA | 5,907,962:1 | +G | 28.6% | coding (61/1095 nt) | spuE ← | spermidine/putrescine ABC transporter substrate‑binding protein |
| RA | 5,907,968 | Δ1 bp | 27.3% | coding (55/1095 nt) | spuE ← | spermidine/putrescine ABC transporter substrate‑binding protein |
| RA | 5,914,167 | G→A | 16.0% | intergenic (+3/+150) | spuI → / ← argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| RA | 5,914,180 | C→T | 16.0% | intergenic (+16/+137) | spuI → / ← argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| RA | 5,914,182 | C→G | 17.8% | intergenic (+18/+135) | spuI → / ← argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| RA | 5,914,184 | A→G | 16.0% | intergenic (+20/+133) | spuI → / ← argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| RA | 5,978,158 | T→A | 10.3% | D9V (GAC→GTC) | PP_5240 ← | two‑component system response regulator |
| RA | 5,988,945 | C→A | 29.6% | intergenic (+183/‑363) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,950 | C→T | 27.6% | intergenic (+188/‑358) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,951 | A→G | 24.1% | intergenic (+189/‑357) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,961 | T→C | 26.5% | intergenic (+199/‑347) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,997,245:1 | +G | 25.0% | intergenic (‑158/+42) | PP_5252 ← / ← PP_5253 | hypothetical protein/arylesterase |
| RA | 5,997,250 | Δ1 bp | 23.8% | intergenic (‑163/+37) | PP_5252 ← / ← PP_5253 | hypothetical protein/arylesterase |
| RA | 6,002,481 | C→A | 10.3% | intergenic (‑125/+21) | amaA ← / ← amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase |
| RA | 6,031,887 | A→T | 19.4% | K229* (AAG→TAG) ‡ | dppA‑IV → | dipeptide transport protein |
| RA | 6,031,888 | A→T | 19.4% | K229M (AAG→ATG) ‡ | dppA‑IV → | dipeptide transport protein |
| RA | 6,071,939 | C→G | 18.7% | L214F (TTG→TTC) | pstB‑II ← | phosphate ABC transporter ATP‑binding protein |
| RA | 6,081,044 | T→A | 41.6% | intergenic (+35/+27) | PP_5332 → / ← PP_5333 | hypothetical protein/hypothetical protein |
| RA | 6,081,045 | T→A | 41.6% | intergenic (+36/+26) | PP_5332 → / ← PP_5333 | hypothetical protein/hypothetical protein |
| RA | 6,104,109 | T→A | 11.4% | intergenic (+31/‑83) | PP_5353 → / → PP_5354 | hypothetical protein/hypothetical protein |
| RA | 6,104,110 | T→A | 10.9% | intergenic (+32/‑82) | PP_5353 → / → PP_5354 | hypothetical protein/hypothetical protein |
| RA | 6,125,913 | G→T | 17.9% | G218W (GGG→TGG) | PP_5374 → | choline/carnitine/betaine transporter family protein |
| RA | 6,125,918 | G→C | 18.0% | L219L (CTG→CTC) | PP_5374 → | choline/carnitine/betaine transporter family protein |
| RA | 6,125,923 | A→C | 19.5% | Q221P (CAG→CCG) | PP_5374 → | choline/carnitine/betaine transporter family protein |
| RA | 6,138,499 | T→A | 16.7% | F300I (TTC→ATC) ‡ | czcC → | CzcC family metal RND transporter outer membrane protein |
| RA | 6,138,500 | T→A | 16.9% | F300Y (TTC→TAC) ‡ | czcC → | CzcC family metal RND transporter outer membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 171396–172965 | 176331–172968 | 4–4936 | 3 [1] | [1] 3 | [PP_16SA]–[PP_5SA] | [PP_16SA],PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947 | 176638–178395 | 181680–178398 | 4–5043 | 3 [2] | [2] 3 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | NC_002947 | 5005748 | 5005791 | 44 | 4 [2] | [2] 3 | PP_4410 | hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 90374 | 17 (0.900) | 5 (0.310) | 5/214 | NT | 21.4% | intergenic (+49/+73) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 90397 | 22 (1.350) | intergenic (+72/+50) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein | |||||
| * | ? | NC_002947 | = 336235 | 1 (0.050) | 5 (0.340) | 5/192 | NT | 53.3% | intergenic (+80/+313) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 336301 | 8 (0.550) | intergenic (+146/+247) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | 353374 = | 30 (1.600) | 3 (0.170) | 3/230 | NT | 10.5% | coding (959/1179 nt) | cbcV | choline/betaine/carnitine ABC transporter ATP binding protein |
| ? | NC_002947 | 353413 = | 23 (1.310) | coding (920/1179 nt) | cbcV | choline/betaine/carnitine ABC transporter ATP binding protein | |||||
| * | ? | NC_002947 | = 398599 | 21 (1.120) | 4 (0.230) | 4/228 | NT | 18.4% | intergenic (‑112/+100) | PP_0331/PP_0332 | hypothetical protein/acyltransferase |
| ? | NC_002947 | = 398664 | 16 (0.920) | intergenic (‑177/+35) | PP_0331/PP_0332 | hypothetical protein/acyltransferase | |||||
| * | ? | NC_002947 | 478264 = | 21 (1.120) | 7 (0.490) | 6/186 | NT | 34.3% | intergenic (+9/+101) | PP_0393/cca | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase |
| ? | NC_002947 | 478359 = | 11 (0.780) | intergenic (+104/+6) | PP_0393/cca | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase | |||||
| * | ? | NC_002947 | = 485836 | 14 (0.750) | 5 (0.280) | 5/236 | NT | 27.5% | coding (102/867 nt) | apaH | bis(5'‑nucleosyl)‑tetraphosphatase |
| ? | NC_002947 | = 485846 | 13 (0.720) | coding (92/867 nt) | apaH | bis(5'‑nucleosyl)‑tetraphosphatase | |||||
| * | ? | NC_002947 | 486032 = | 17 (0.900) | 3 (0.170) | 3/232 | NT | 15.4% | coding (286/381 nt) | apaG | Co(2+)/Mg(2+) efflux protein |
| ? | NC_002947 | 486064 = | 17 (0.960) | coding (254/381 nt) | apaG | Co(2+)/Mg(2+) efflux protein | |||||
| * | ? | NC_002947 | 490731 = | 18 (0.960) | 4 (0.210) | 4/244 | NT | 19.6% | coding (1693/2823 nt) | lptD | LPS‑assembly protein LptD |
| ? | NC_002947 | 490755 = | 15 (0.800) | coding (1669/2823 nt) | lptD | LPS‑assembly protein LptD | |||||
| * | ? | NC_002947 | 655800 = | 17 (0.900) | 9 (0.500) | 8/236 | NT | 36.5% | coding (546/1356 nt) | PP_0563 | two‑component system response regulator |
| ? | NC_002947 | 655828 = | 15 (0.830) | coding (518/1356 nt) | PP_0563 | two‑component system response regulator | |||||
| * | ? | NC_002947 | = 661596 | 26 (1.380) | 3 (0.170) | 3/236 | NT | 9.4% | intergenic (+103/+24) | PP_0568/PP_0569 | hypothetical protein/MATE efflux family protein |
| ? | NC_002947 | = 661622 | 33 (1.830) | coding (1336/1338 nt) | PP_0569 | MATE efflux family protein | |||||
| * | ? | NC_002947 | = 726912 | 20 (1.060) | 3 (0.160) +TT |
3/242 | NT | 13.2% | intergenic (‑156/+111) | PP_0620/PP_0621 | GntR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | 5571473 = | 20 (1.060) | intergenic (+44/+97) | queG/yicG | epoxyqueuosine reductase/inner membrane protein | |||||
| * | ? | NC_002947 | = 743469 | 16 (0.850) | 2 (0.120) +AGGCAGGTCTGATTTCGC |
3/210 | NT | 12.8% | intergenic (+145/+129) | PP_0635/PP_0636 | group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein |
| ? | NC_002947 | = 1431465 | NA (NA) | intergenic (+74/+78) | PP_1252/PP_1253 | group II intron‑encoding maturase/ArsR family transcriptional regulator | |||||
| * | ? | NC_002947 | = 785264 | 18 (0.960) | 4 (0.230) | 4/232 | NT | 17.0% | coding (665/3831 nt) | PP_0672 | sensory box protein |
| ? | NC_002947 | = 785293 | 22 (1.240) | coding (636/3831 nt) | PP_0672 | sensory box protein | |||||
| * | ? | NC_002947 | = 796843 | 29 (1.540) | 5 (0.310) | 5/214 | NT | 15.6% | intergenic (+42/‑148) | PP_0681/PP_0682 | hypothetical protein/inner membrane protein |
| ? | NC_002947 | = 796881 | 29 (1.780) | intergenic (+80/‑110) | PP_0681/PP_0682 | hypothetical protein/inner membrane protein | |||||
| * | ? | NC_002947 | 820860 = | 25 (1.330) | 4 (0.220) | 4/240 | NT | 14.2% | coding (228/2412 nt) | PP_0707 | hypothetical protein |
| ? | NC_002947 | 820883 = | 24 (1.310) | coding (251/2412 nt) | PP_0707 | hypothetical protein | |||||
| * | ? | NC_002947 | 851021 = | 21 (1.120) | 3 (0.160) | 3/242 | NT | 12.9% | intergenic (‑601/‑204) | pcs/hemA | phosphatidylcholine synthase/glutamyl‑tRNA reductase |
| ? | NC_002947 | = 2085560 | 20 (1.080) | intergenic (+226/‑369) | PP_1864/PP_1865 | hypothetical protein/transposase | |||||
| * | ? | NC_002947 | 867938 = | 31 (1.650) | 5 (0.300) | 5/216 | NT | 18.1% | intergenic (+33/+144) | PP_0750/mqo‑I | hypothetical protein/malate:quinone oxidoreductase |
| ? | NC_002947 | 867998 = | 18 (1.090) | intergenic (+93/+84) | PP_0750/mqo‑I | hypothetical protein/malate:quinone oxidoreductase | |||||
| * | ? | NC_002947 | = 1273270 | 24 (1.280) | 5 (0.300) | 5/216 | NT | 18.2% | intergenic (+55/+113) | PP_1113/PP_1114 | pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein |
| ? | NC_002947 | = 1273329 | 24 (1.460) | intergenic (+114/+54) | PP_1113/PP_1114 | pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein | |||||
| * | ? | NC_002947 | = 1419584 | 13 (0.690) | 7 (0.510) | 7/182 | NT | 39.3% | intergenic (‑67/+70) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1419614 | 12 (0.870) | intergenic (‑97/+40) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 1499465 | 14 (0.750) | 3 (0.200) | 3/200 | NT | 21.2% | intergenic (+35/‑131) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 1499502 | 11 (0.720) | intergenic (+72/‑94) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
| * | ? | NC_002947 | = 1696895 | 16 (0.850) | 3 (0.170) | 3/232 | NT | 15.4% | coding (886/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 1696922 | 18 (1.020) | coding (913/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator | |||||
| * | ? | NC_002947 | 1780109 = | 12 (0.640) | 4 (0.250) | 4/208 | NT | 25.7% | intergenic (+26/+80) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| ? | NC_002947 | 1780171 = | 13 (0.820) | intergenic (+88/+18) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase | |||||
| * | ? | NC_002947 | 1844176 = | 7 (0.370) | 6 (0.330) | 6/236 | NT | 25.2% | coding (660/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2179419 | 29 (1.610) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 1895760 | 18 (0.960) | 4 (0.220) | 4/234 | NT | 17.7% | coding (952/1986 nt) | PP_1700 | acyltransferase |
| ? | NC_002947 | = 1895766 | 20 (1.120) | coding (958/1986 nt) | PP_1700 | acyltransferase | |||||
| * | ? | NC_002947 | 1900904 = | 20 (1.060) | 5 (0.270) | 5/240 | NT | 22.5% | coding (1413/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase |
| ? | NC_002947 | 1900952 = | 15 (0.820) | coding (1461/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase | |||||
| * | ? | NC_002947 | 1967188 = | 9 (0.480) | 8 (0.580) | 6/180 | NT | 54.1% | intergenic (+15/+104) | PP_1762/yciK | hypothetical protein/putative oxidoreductase |
| ? | NC_002947 | 1967284 = | 7 (0.510) | intergenic (+111/+8) | PP_1762/yciK | hypothetical protein/putative oxidoreductase | |||||
| * | ? | NC_002947 | 2048837 = | 16 (0.850) | 4 (0.250) | 4/212 | NT | 24.4% | intergenic (+33/+106) | PP_1821/PP_1822 | glutathione S‑transferase family protein/hypothetical protein |
| ? | NC_002947 | 2048928 = | 11 (0.680) | intergenic (+124/+15) | PP_1821/PP_1822 | glutathione S‑transferase family protein/hypothetical protein | |||||
| * | ? | NC_002947 | 2050911 = | 19 (1.010) | 4 (0.230) | 4/230 | NT | 20.1% | coding (135/321 nt) | PP_1825 | hypothetical protein |
| ? | NC_002947 | 2050951 = | 14 (0.800) | coding (95/321 nt) | PP_1825 | hypothetical protein | |||||
| * | ? | NC_002947 | = 2056021 | 35 (1.860) | 4 (0.250) | 3/214 | NT | 11.5% | intergenic (+27/‑116) | aroC/PP_1831 | chorismate synthase/membrane protein |
| ? | NC_002947 | = 2056095 | 31 (1.900) | intergenic (+101/‑42) | aroC/PP_1831 | chorismate synthase/membrane protein | |||||
| * | ? | NC_002947 | 2144373 = | 21 (1.120) | 4 (0.210) | 5/244 | NT | 16.4% | coding (679/1005 nt) | lpxK | tetraacyldisaccharide 4'‑kinase |
| ? | NC_002947 | 2144394 = | 20 (1.070) | coding (700/1005 nt) | lpxK | tetraacyldisaccharide 4'‑kinase | |||||
| * | ? | NC_002947 | 2303555 = | 22 (1.170) | 3 (0.170) | 3/230 | NT | 12.6% | coding (1330/1632 nt) | PP_2027 | hypothetical protein |
| ? | NC_002947 | 2303598 = | 21 (1.200) | coding (1287/1632 nt) | PP_2027 | hypothetical protein | |||||
| * | ? | NC_002947 | = 2401237 | 8 (0.430) | 5 (0.290) | 4/228 | NT | 36.5% | coding (695/1332 nt) | dgt | deoxyguanosinetriphosphate triphosphohydrolase‑like protein |
| ? | NC_002947 | = 2401251 | 10 (0.570) | coding (681/1332 nt) | dgt | deoxyguanosinetriphosphate triphosphohydrolase‑like protein | |||||
| * | ? | NC_002947 | 2449107 = | 26 (1.380) | 3 (0.170) | 3/232 | NT | 13.2% | coding (2019/3318 nt) | PP_2146 | SNF2/RAD54 family helicase |
| ? | NC_002947 | 2449143 = | 15 (0.850) | coding (1983/3318 nt) | PP_2146 | SNF2/RAD54 family helicase | |||||
| * | ? | NC_002947 | 2465132 = | 24 (1.280) | 4 (0.220) | 4/238 | NT | 15.3% | coding (549/1353 nt) | PP_2157 | sensor histidine kinase |
| ? | NC_002947 | 2465167 = | 21 (1.160) | coding (514/1353 nt) | PP_2157 | sensor histidine kinase | |||||
| * | ? | NC_002947 | = 2615984 | 24 (1.280) | 6 (0.340) | 4/232 | NT | 21.2% | coding (108/1641 nt) | PP_2288 | tail fiber protein |
| ? | NC_002947 | = 2615995 | 22 (1.240) | coding (119/1641 nt) | PP_2288 | tail fiber protein | |||||
| * | ? | NC_002947 | = 2622525 | 6 (0.320) | 3 (0.170) | 3/234 | NT | 27.6% | intergenic (+273/‑75) | PP_5515/PP_5516 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 2622573 | 10 (0.560) | intergenic (+321/‑27) | PP_5515/PP_5516 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | 2990927 = | 13 (0.690) | 4 (0.230) | 4/232 | NT | 24.8% | coding (596/2169 nt) | vgrG‑I | type VI secretion system protein |
| ? | NC_002947 | 2990961 = | 12 (0.680) | coding (562/2169 nt) | vgrG‑I | type VI secretion system protein | |||||
| * | ? | NC_002947 | 3339160 = | 13 (0.690) | 5 (0.320) | 5/202 | NT | 29.7% | intergenic (‑119/+124) | PP_2935/ybiT | membrane protein/ABC‑F family ATPase |
| ? | NC_002947 | 3339248 = | 13 (0.840) | intergenic (‑207/+36) | PP_2935/ybiT | membrane protein/ABC‑F family ATPase | |||||
| * | ? | NC_002947 | 3424447 = | 20 (1.060) | 4 (0.220) | 4/234 | NT | 18.6% | coding (355/363 nt) | PP_3039 | hypothetical protein |
| ? | NC_002947 | 3424498 = | 16 (0.900) | intergenic (+43/‑469) | PP_3039/PP_3040 | hypothetical protein/holin | |||||
| * | ? | NC_002947 | = 3428398 | 17 (0.900) | 4 (0.220) | 4/236 | NT | 16.6% | coding (63/1494 nt) | PP_3044 | lambda family portal protein |
| ? | NC_002947 | = 3428432 | 24 (1.330) | coding (97/1494 nt) | PP_3044 | lambda family portal protein | |||||
| * | ? | NC_002947 | = 3689486 | 19 (1.010) | 4 (0.220) | 4/236 | NT | 17.3% | coding (463/654 nt) | PP_3254 | nucleosidase |
| ? | NC_002947 | = 3689511 | 20 (1.110) | coding (488/654 nt) | PP_3254 | nucleosidase | |||||
| * | ? | NC_002947 | 3691685 = | 17 (0.900) | 3 (0.170) | 3/232 | NT | 14.3% | coding (177/600 nt) | PP_3257 | putative Methyltransferase |
| ? | NC_002947 | 3691733 = | 20 (1.130) | coding (129/600 nt) | PP_3257 | putative Methyltransferase | |||||
| * | ? | NC_002947 | 3919152 = | 18 (0.960) | 3 (0.170) | 3/238 | NT | 16.9% | coding (2890/3129 nt) | mexB | multidrug resistance protein MexB |
| ? | NC_002947 | 3919185 = | 12 (0.660) | coding (2923/3129 nt) | mexB | multidrug resistance protein MexB | |||||
| * | ? | NC_002947 | 3981803 = | 14 (0.750) | 3 (0.170) | 3/238 | NT | 17.9% | intergenic (‑58/+39) | cobW/PP_mr43 | adenosylcobalamin biosynthesis protein CobW/Cobalamin regulatory region |
| ? | NC_002947 | 3981841 = | 14 (0.770) | intergenic (‑96/+1) | cobW/PP_mr43 | adenosylcobalamin biosynthesis protein CobW/Cobalamin regulatory region | |||||
| * | ? | NC_002947 | 4014845 = | 19 (1.010) | 4 (0.230) | 4/226 | NT | 19.8% | coding (157/1404 nt) | PP_3543 | iron‑sulfur cluster‑binding protein |
| ? | NC_002947 | 4014880 = | 15 (0.870) | coding (192/1404 nt) | PP_3543 | iron‑sulfur cluster‑binding protein | |||||
| * | ? | NC_002947 | = 4117899 | 23 (1.220) | 4 (0.230) | 4/232 | NT | 15.2% | coding (545/2256 nt) | PP_3622 | isoquinoline 1‑oxidoreductase subunit beta |
| ? | NC_002947 | = 4117925 | 23 (1.300) | coding (571/2256 nt) | PP_3622 | isoquinoline 1‑oxidoreductase subunit beta | |||||
| * | ? | NC_002947 | 4167406 = | 20 (1.060) | 4 (0.230) | 4/232 | NT | 16.0% | coding (114/1212 nt) | creA | creatinase |
| ? | NC_002947 | 4167447 = | 23 (1.300) | coding (73/1212 nt) | creA | creatinase | |||||
| * | ? | NC_002947 | 4350173 = | 12 (0.640) | 4 (0.250) | 4/212 | NT | 32.9% | intergenic (‑181/+56) | galU/PP_3822 | UTP‑glucose‑1‑phosphate uridylyltransferase/cytochrome c family protein |
| ? | NC_002947 | 4350224 = | 6 (0.370) | intergenic (‑232/+5) | galU/PP_3822 | UTP‑glucose‑1‑phosphate uridylyltransferase/cytochrome c family protein | |||||
| * | ? | NC_002947 | 4366918 = | 14 (0.750) | 4 (0.220) | 4/234 | NT | 22.7% | intergenic (‑140/+40) | PP_3843/PP_3844 | hypothetical protein/D‑aminopeptidase |
| ? | NC_002947 | 4366948 = | 14 (0.780) | intergenic (‑170/+10) | PP_3843/PP_3844 | hypothetical protein/D‑aminopeptidase | |||||
| * | ? | NC_002947 | 4586063 = | 4 (0.210) | 7 (0.540) | 7/170 | NT | 78.9% | intergenic (+102/+115) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | 4586167 = | 1 (0.080) | intergenic (+206/+11) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | = 4586100 | 4 (0.210) | 6 (0.460) | 5/170 | NT | 76.2% | intergenic (+139/+78) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | = 4586128 | 1 (0.080) | intergenic (+167/+50) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | = 4647641 | 5 (0.270) | 4 (0.310) | 3/168 | NT | 46.0% | intergenic (+48/+83) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | = 4647671 | 6 (0.470) | intergenic (+78/+53) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
| * | ? | NC_002947 | 4796257 = | 20 (1.060) | 4 (0.220) | 4/234 | NT | 17.0% | coding (231/1359 nt) | pvdH | diaminobutyrate‑2‑oxoglutarate transaminase |
| ? | NC_002947 | 4796290 = | 20 (1.120) | coding (198/1359 nt) | pvdH | diaminobutyrate‑2‑oxoglutarate transaminase | |||||
| * | ? | NC_002947 | 4828690 = | 33 (1.760) | 3 (0.170) | 3/228 | NT | 11.4% | coding (2545/12954 nt) | pvdL | non‑ribosomal peptide synthetase |
| ? | NC_002947 | 4828734 = | 16 (0.920) | coding (2501/12954 nt) | pvdL | non‑ribosomal peptide synthetase | |||||
| * | ? | NC_002947 | 4845173 = | 21 (1.120) | 4 (0.250) | 4/214 | NT | 18.5% | intergenic (+14/‑123) | PP_4260/PP_4261 | hypothetical protein/cation‑transporting P‑type ATPase |
| ? | NC_002947 | 4845266 = | 17 (1.040) | intergenic (+107/‑30) | PP_4260/PP_4261 | hypothetical protein/cation‑transporting P‑type ATPase | |||||
| * | ? | NC_002947 | = 4860676 | 23 (1.220) | 3 (0.170) | 3/236 | NT | 12.5% | coding (419/2331 nt) | ligA | DNA ligase |
| ? | NC_002947 | = 4860710 | 20 (1.110) | coding (385/2331 nt) | ligA | DNA ligase | |||||
| * | ? | NC_002947 | = 4870735 | 16 (0.850) | 5 (0.330) | 5/196 | NT | 23.4% | intergenic (+40/‑80) | xdhB/xdhC | xanthine dehydrogenase subunit XdhB/xanthine dehydrogenase accessory factor |
| ? | NC_002947 | = 4870755 | 20 (1.340) | intergenic (+60/‑60) | xdhB/xdhC | xanthine dehydrogenase subunit XdhB/xanthine dehydrogenase accessory factor | |||||
| * | ? | NC_002947 | = 4896443 | 25 (1.330) | 11 (0.710) | 10/204 | NT | 35.1% | intergenic (+31/‑177) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 4896490 | 20 (1.290) | intergenic (+78/‑130) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
| * | ? | NC_002947 | 5162618 = | 29 (1.540) | 7 (0.470) | 6/194 | NT | 27.5% | intergenic (+93/+108) | PP_4544/PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase |
| ? | NC_002947 | 5162702 = | 14 (0.950) | intergenic (+177/+24) | PP_4544/PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase | |||||
| * | ? | NC_002947 | = 5168047 | 20 (1.060) | 4 (0.240) | 4/216 | NT | 16.8% | intergenic (‑120/‑384) | hrpA/PP_4547 | ATP‑dependent helicase HrpA/glutamine synthetase |
| ? | NC_002947 | = 5168063 | 22 (1.340) | intergenic (‑136/‑368) | hrpA/PP_4547 | ATP‑dependent helicase HrpA/glutamine synthetase | |||||
| * | ? | NC_002947 | 5171015 = | 32 (1.700) | 3 (0.160) | 3/240 | NT | 8.8% | coding (1196/1308 nt) | PP_4548 | oxidoreductase |
| ? | NC_002947 | 5171054 = | 31 (1.690) | coding (1235/1308 nt) | PP_4548 | oxidoreductase | |||||
| * | ? | NC_002947 | = 5196440 | 27 (1.440) | 4 (0.230) | 3/226 | NT | 14.3% | coding (123/690 nt) | ybgJ | allophanate hydrolase subunit 1 |
| ? | NC_002947 | = 5196465 | 23 (1.330) | coding (98/690 nt) | ybgJ | allophanate hydrolase subunit 1 | |||||
| * | ? | NC_002947 | = 5288471 | 18 (0.960) | 8 (0.560) | 8/186 | NT | 39.4% | intergenic (‑104/+80) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
| ? | NC_002947 | = 5288505 | 11 (0.780) | intergenic (‑138/+46) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B | |||||
| * | ? | NC_002947 | = 5365167 | 23 (1.220) | 3 (0.160) | 3/242 | NT | 15.1% | coding (1437/1914 nt) | ftsH | integral membrane ATP‑dependent zinc metallopeptidase |
| ? | NC_002947 | = 5365227 | 11 (0.600) | coding (1377/1914 nt) | ftsH | integral membrane ATP‑dependent zinc metallopeptidase | |||||
| * | ? | NC_002947 | 5382446 = | 15 (0.800) | 7 (0.520) | 6/176 | NT | 56.7% | intergenic (+18/+115) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | 5382544 = | 0 (0.000) | intergenic (+116/+17) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
| * | ? | NC_002947 | = 5671689 | 16 (0.850) | 3 (0.200) | 3/198 | NT | 17.2% | intergenic (+57/‑113) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein |
| ? | NC_002947 | = 5671726 | 16 (1.060) | intergenic (+94/‑76) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein | |||||
| * | ? | NC_002947 | 5759460 = | 32 (1.700) | 7 (0.510) | 7/182 | NT | 31.4% | intergenic (+13/+143) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
| ? | NC_002947 | 5759552 = | 7 (0.510) | intergenic (+105/+51) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB | |||||
| * | ? | NC_002947 | = 5816927 | 27 (1.440) | 4 (0.250) | 4/210 | NT | 14.0% | intergenic (+57/+72) | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
| ? | NC_002947 | = 5816954 | 26 (1.620) | intergenic (+84/+45) | PP_5092/pilT | NLP/P60 protein/twitching motility protein | |||||
| * | ? | NC_002947 | = 5863651 | 21 (1.120) | 4 (0.220) | 4/238 | NT | 16.9% | coding (294/870 nt) | PP_5138 | LysR family transcriptional regulator |
| ? | NC_002947 | = 5863681 | 19 (1.050) | coding (264/870 nt) | PP_5138 | LysR family transcriptional regulator | |||||
| * | ? | NC_002947 | 5897799 = | 14 (0.750) | 4 (0.270) | 5/192 | NT | 32.1% | intergenic (‑143/+91) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| ? | NC_002947 | 5897875 = | 6 (0.410) | intergenic (‑219/+15) | PP_5172/PP_5173 | hypothetical protein/RND family transporter | |||||
| * | ? | NC_002947 | 5903827 = | 29 (1.540) | 4 (0.250) | 3/214 | NT | 15.3% | intergenic (+27/+80) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
| ? | NC_002947 | 5903887 = | 19 (1.160) | intergenic (+87/+20) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | NC_002947 | 5914213 = | 24 (1.280) | 4 (0.280) | 4/190 | NT | 22.5% | intergenic (+49/+104) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| ? | NC_002947 | 5914309 = | 9 (0.620) | intergenic (+145/+8) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase | |||||
| * | ? | NC_002947 | 5957953 = | 18 (0.960) | 4 (0.230) | 4/230 | NT | 18.3% | coding (1301/2856 nt) | cyaA | adenylate cyclase |
| ? | NC_002947 | 5957991 = | 19 (1.080) | coding (1339/2856 nt) | cyaA | adenylate cyclase | |||||
| * | ? | NC_002947 | = 6117789 | 11 (0.590) | 3 (0.170) | 3/236 | NT | 16.4% | coding (42/471 nt) | PP_5367 | transketolase domain‑containing protein |
| ? | NC_002947 | = 6117858 | 20 (1.110) | intergenic (‑28/+68) | PP_5367/PP_5368 | transketolase domain‑containing protein/MFS transporter | |||||