mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,443,379 | C→A | A272S (GCC→TCC) | PP_1262 ← | LysR family transcriptional regulator |
| RA | 1,851,755 | A→G | I267V (ATC→GTC) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,635,606 | T→G | T66P (ACC→CCC) | uvrY ← | BarA/UvrY two‑componenent system response regulator |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 171344–176305 | 176305 | 1–4962 | 20 [19] | [19] 20 | PP_16SA–[PP_5SA] | PP_16SA,PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947 | 176629–181745 | 181745 | 1–5117 | 22 [19] | [19] 20 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4808219 = | 7 (0.130) | 23 (0.560) | 15/210 | 2.3 | 52.1% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 37 (0.900) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||