mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 102,733 | T→C | 10.8% | L518P (CTG→CCG) | prlC → | oligopeptidase A |
| RA | 146,084 | G→A | 12.9% | A440T (GCC→ACC) | gltP → | glutamate/aspartate‑proton DAACS transporter |
| RA | 188,837 | C→T | 100% | R316C (CGC→TGC) | PP_0165 → | GGDEF domain‑containing protein |
| RA | 195,559 | C→A | 26.1% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 48.0% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 210,239 | G→T | 18.2% | D5249Y (GAC→TAC) | PP_0168 → | putative surface adhesion protein |
| RA | 213,169 | T→C | 26.7% | V6225V (GTT→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 213,172 | C→T | 28.6% | G6226G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 213,220 | G→C | 25.2% | V6242V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 233,545 | C→T | 100% | G548G (GGC→GGT) | PP_0180 → | cytochrome c family protein |
| RA | 270,519 | G→T | 25.0% | L140L (CTG→CTT) | PP_0218 → | sensory box protein |
| RA | 313,191 | C→T | 10.8% | C8Y (TGC→TAC) | fdhD ← | protein sulfur transferase |
| RA | 341,380 | C→T | 14.8% | intergenic (‑271/‑107) | PP_5438 ← / → gabP‑I | hypothetical protein/gamma‑aminobutyrate permease |
| RA | 378,220 | C→T | 11.3% | G400S (GGT→AGT) | gbcA ← | glycine‑betaine dioxygenase subunit |
| RA | 476,133 | A→T | 100% | Q141L (CAG→CTG) | tsaD → | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
| RA | 478,702 | C→A | 22.2% | R257L (CGA→CTA) | cca ← | multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase |
| RA | 506,820 | T→C | 9.3% | D437D (GAT→GAC) | trpE → | anthranilate synthase component 1 |
| RA | 527,862 | A→G | 37.5% | noncoding (1097/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,898 | Δ1 bp | 25.0% | noncoding (1133/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,917 | A→G | 19.6% | noncoding (1152/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,921 | G→C | 19.6% | noncoding (1156/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,922 | T→A | 18.2% | noncoding (1157/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,923 | A→G | 17.2% | noncoding (1158/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,924 | T→C | 17.2% | noncoding (1159/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,925 | C→G | 18.5% | noncoding (1160/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,926:1 | +C | 17.2% | noncoding (1161/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,927 | T→G | 17.0% | noncoding (1162/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,931:1 | +T | 16.4% | noncoding (1166/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,931:2 | +G | 16.4% | noncoding (1166/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,934 | A→T | 18.3% | noncoding (1169/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,937 | A→T | 19.2% | noncoding (1172/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,940 | Δ1 bp | 16.9% | noncoding (1175/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,946 | A→G | 19.1% | noncoding (1181/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,966 | T→C | 16.7% | noncoding (1201/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,974 | A→T | 29.5% | noncoding (1209/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,976 | T→C | 17.8% | noncoding (1211/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,979 | A→T | 20.0% | noncoding (1214/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,982 | A→G | 18.8% | noncoding (1217/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 527,985 | T→A | 18.6% | noncoding (1220/2902 nt) | PP_23SC → | 23S ribosomal RNA |
| RA | 543,387 | G→A | 22.0% | A542T (GCC→ACC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | 630,463 | G→T | 10.2% | T411T (ACC→ACA) | PP_0544 ← | ethanolamine transporter |
| RA | 630,536 | G→T | 11.7% | S387Y (TCT→TAT) | PP_0544 ← | ethanolamine transporter |
| RA | 641,286 | C→T | 12.0% | G190D (GGC→GAC) | bdhA ← | 2,3‑butanediol dehydrogenase |
| RA | 699,725 | A→G | 39.1% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 752,696 | C→A | 20.1% | L23F (TTG→TTT) | PP_0641 ← | hypothetical protein |
| RA | 783,388 | G→T | 11.4% | T847T (ACC→ACA) | PP_0672 ← | sensory box protein |
| RA | 898,346 | T→A | 16.0% | V76D (GTC→GAC) | PP_0781 → | hypothetical protein |
| RA | 1,011,323:1 | +T | 100% | intergenic (‑258/+192) | PP_0871 ← / ← SBRG_Ecoli_galM | glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM |
| RA | 1,047,840 | C→T | 100% | S233L (TCG→TTG) | colS → | integral membrane sensor signal transduction histidine kinase |
| RA | 1,049,684 | G→T | 19.0% | R147L (CGG→CTG) | PP_0904 → | protein InaA |
| RA | 1,094,030 | T→C | 7.9% | L107L (TTG→CTG) | PP_0943 → | hypothetical protein |
| RA | 1,144,107 | C→T | 13.8% | A165T (GCC→ACC) | arcB ← | ornithine carbamoyltransferase |
| RA | 1,148,023 | G→C | 19.3% | P68P (CCG→CCC) | arcD‑II → | arginine/ornithine antiporter |
| RA | 1,148,089 | G→A | 5.6% | S90S (TCG→TCA) | arcD‑II → | arginine/ornithine antiporter |
| RA | 1,148,134 | T→C | 5.9% | Y105Y (TAT→TAC) | arcD‑II → | arginine/ornithine antiporter |
| RA | 1,267,301 | C→A | 12.9% | G97C (GGC→TGC) | PP_1104 ← | AotO‑related protein |
| RA | 1,286,894 | G→T | 35.3% | Q324K (CAA→AAA) | PP_1118 ← | recombinase‑like protein |
| RA | 1,310,148 | C→A | 14.8% | M68I (ATG→ATT) | livM ← | branched‑chain amino acid ABC transporter permease |
| RA | 1,332,076 | C→T | 42.4% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,366,538 | T→C | 11.1% | L216P (CTG→CCG) | phoP → | two‑component system DNA‑binding transcriptional regulator |
| RA | 1,426,242 | C→A | 7.4% | Q256K (CAG→AAG) | PP_1245 → | hypothetical protein |
| MC JC | 1,515,769 | Δ33 bp | 100% | pseudogene (757‑789/1851 nt) | PP_1325 ← | putative lipoprotein |
| RA | 1,543,926 | C→A | 14.8% | L545L (CTG→CTT) | PP_1350 ← | two‑component system sensor histidine kinase/response regulator |
| RA | 1,578,455 | C→T | 12.9% | G74G (GGC→GGT) | pcaD → | 3‑oxoadipate enol‑lactonase |
| RA | 1,585,535 | G→A | 20.0% | P285S (CCG→TCG) | ttgB ← | efflux pump membrane protein TtgB |
| RA | 1,593,646 | C→A | 9.1% | P148P (CCG→CCT) | PP_1393 ← | transcriptional regulator |
| RA | 1,658,742 | G→T | 11.1% | P1006P (CCC→CCA) | PP_1449 ← | hypothetical protein |
| RA | 1,760,659 | C→A | 26.6% | L62M (CTG→ATG) | PP_1559 → | holin |
| RA | 1,830,372 | G→A | 7.7% | intergenic (‑128/‑33) | mutS ← / → PP_1627 | DNA mismatch repair protein MutS/hypothetical protein |
| RA | 1,856,513 | A→G | 100% | D203G (GAT→GGT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 1,906,760 | C→A | 11.1% | R774S (CGC→AGC) | PP_1703 → | assimilatory nitrate reductase/sulfite reductase |
| RA | 1,974,131 | G→T | 12.5% | P127P (CCC→CCA) | ubiG ← | ubiquinone biosynthesis O‑methyltransferase |
| RA | 2,108,569 | A→T | 19.1% | V436D (GTC→GAC) | PP_1879 ← | hypothetical protein |
| RA | 2,120,159 | G→A | 10.5% | V229V (GTG→GTA) | PP_1883 → | hypothetical protein |
| RA | 2,190,495 | C→A | 33.3% | G702G (GGG→GGT) | PP_1936 ← | membrane protein |
| RA | 2,247,856 | C→T | 19.4% | A146V (GCC→GTC) | PP_1978 → | TetR family transcriptional regulator |
| RA | 2,316,584 | G→T | 8.7% | intergenic (+32/+4) | PP_2033 → / ← PP_2034 | hypothetical protein/membrane protein |
| RA | 2,329,744 | C→A | 11.4% | R38R (CGG→AGG) | yidH → | inner membrane protein |
| RA | 2,372,641 | C→A | 10.8% | S156* (TCA→TAA) | gdhB → | NAD‑specific glutamate dehydrogenase |
| RA | 2,388,787 | G→T | 12.1% | A34A (GCC→GCA) | PP_2091 ← | serine/threonine‑protein kinase |
| RA | 2,409,233 | G→T | 14.3% | G290C (GGC→TGC) | PP_2106 → | ammonium transporter |
| RA | 2,505,668 | C→A | 9.3% | D265Y (GAT→TAT) | PP_2194 ← | LysR family transcriptional regulator |
| RA | 2,542,592 | G→A | 16.1% | A480V (GCC→GTC) | mrpAB ← | K(+)/H(+) antiporter subunit A/B |
| RA | 2,633,849 | C→T | 100% | H173H (CAC→CAT) | clpP → | ATP‑dependent Clp protease proteolytic subunit |
| RA | 2,690,592 | G→T | 19.1% | R708S (CGC→AGC) | PP_2354 ← | two‑component system sensor histidine kinase/response regulator |
| RA | 2,781,245 | C→A | 6.9% | I200I (ATC→ATA) | sotB → | sugar efflux transporter |
| RA | 2,822,536 | G→T | 31.2% | L168M (CTG→ATG) | PP_5526 ← | hypothetical protein |
| RA | 2,902,178 | G→T | 12.5% | D169Y (GAC→TAC) | PP_2551 → | LysR family transcriptional regulator |
| RA | 2,902,452 | T→A | 11.4% | L260Q (CTG→CAG) | PP_2551 → | LysR family transcriptional regulator |
| RA | 2,979,688 | C→A | 17.2% | P210Q (CCG→CAG) | PP_2601 → | IclR family transcriptional regulator |
| RA | 2,979,726 | G→T | 17.0% | G223W (GGG→TGG) | PP_2601 → | IclR family transcriptional regulator |
| RA | 3,007,353 | C→A | 16.7% | A134A (GCC→GCA) | PP_2626 → | hypothetical protein |
| RA | 3,035,802 | C→A | 10.0% | A39A (GCC→GCA) | mgtA → | ATP‑dependent magnesium transporter |
| RA | 3,035,836 | C→A | 10.0% | L51I (CTC→ATC) | mgtA → | ATP‑dependent magnesium transporter |
| RA | 3,072,253 | C→T | 13.8% | T100T (ACC→ACT) | qedH‑II → | quinoprotein ethanol dehydrogenase |
| RA | 3,072,445 | G→A | 19.0% | K164K (AAG→AAA) | qedH‑II → | quinoprotein ethanol dehydrogenase |
| RA | 3,164,245 | G→A | 13.3% | A424A (GCG→GCA) | opuA → | glycine betaine ABC transporter ATP‑binding protein/permease |
| RA | 3,213,715 | C→A | 14.8% | P791Q (CCA→CAA) | PP_2812 → | transporter |
| RA | 3,221,967 | C→A | 7.1% | L964M (CTG→ATG) | mexD → | multidrug RND transporter MexD |
| RA | 3,265,392 | C→A | 14.3% | L140L (CTG→CTT) | PP_2857 ← | hypothetical protein |
| RA | 3,304,580 | C→A | 9.7% | P602H (CCT→CAT) | pvdQ → | acyl‑homoserine lactone acylase PvdQ |
| RA | 3,452,278 | A→C | 53.6% | S18R (AGC→CGC) | PP_5556 → | bacteriophage lysis protein |
| RA | 3,491,245 | G→T | 11.1% | L140M (CTG→ATG) | PP_3092 ← | hypothetical protein |
| RA | 3,736,419 | G→T | 21.4% | G109W (GGG→TGG) | PP_3298 → | CinA domain‑containing protein |
| RA | 3,778,856 | C→A | 9.7% | A189A (GCC→GCA) | PP_5743 → | TonB‑dependent receptor protein |
| RA | 3,798,832 | T→G | 14.0% | D228A (GAC→GCC) | PP_3355 ← | beta‑ketothiolase |
| RA | 3,879,140 | T→C | 8.3% | intergenic (‑8/+167) | PP_3421 ← / ← ltg | sensor histidine kinase/lytic transglycosylase |
| RA | 4,018,201 | G→A | 100% | intergenic (+144/‑36) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| RA | 4,093,303 | C→T | 12.1% | H178H (CAC→CAT) | PP_3598 → | peptidase C26 |
| RA | 4,095,237 | G→T | 17.4% | G99C (GGC→TGC) | gudP → | glucarate transporter |
| RA | 4,249,474 | C→A | 12.1% | A180A (GCG→GCT) | aruH ← | arginine‑‑pyruvate transaminase AruH |
| RA | 4,256,493 | A→C | 28.1% | L178R (CTG→CGG) | PP_3726 ← | enoyl‑CoA hydratase/isomerase family protein |
| RA | 4,265,802 | C→A | 8.1% | K651N (AAG→AAT) | PP_3734 ← | ABC transporter permease |
| RA | 4,328,603 | G→T | 28.5% | K66N (AAG→AAT) | PP_5631 → | hypothetical protein |
| RA | 4,353,698 | A→G | 45.2% | intergenic (‑70/+404) | PP_3820 ← / ← galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,531,694 | G→T | 7.4% | A171S (GCC→TCC) | PP_4015 → | HflD‑like high frequency lysogenization protein |
| RA | 4,649,261 | T→A | 19.1% | L378Q (CTG→CAG) | PP_4108 → | 4‑aminobutyrate aminotransferase |
| RA | 4,745,741 | C→A | 21.6% | L425M (CTG→ATG) | gltA → | citrate synthase |
| RA | 4,746,222:1 | +C | 100% | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,224 | A→G | 100% | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,226 | C→T | 100% | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,229 | C→T | 100% | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,232 | C→G | 100% | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,234 | 2 bp→CT | 100% | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,248 | C→T | 100% | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,250 | A→C | 100% | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,253 | 2 bp→GC | 100% | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,785,727 | C→A | 8.1% | R2194L (CGG→CTG) | pvdJ ← | non‑ribosomal peptide synthetase |
| RA | 4,861,450 | G→T | 16.6% | P15H (CCC→CAC) | PP_5670 ← | hypothetical protein |
| RA | 4,928,225 | G→A | 7.0% | S9S (TCC→TCT) | PP_4332 ← | chemotaxis protein CheW |
| RA | 4,929,327 | C→A | 8.6% | P239P (CCG→CCT) | PP_4334 ← | ParA family protein |
| RA | 4,950,408 | A→G | 20.1% | intergenic (+774/+24) | PP_5673 → / ← flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| RA | 4,950,411 | G→A | 19.7% | intergenic (+777/+21) | PP_5673 → / ← flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| RA | 4,950,412 | C→A | 19.9% | intergenic (+778/+20) | PP_5673 → / ← flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| RA | 4,959,068 | T→C | 11.1% | I120V (ATT→GTT) | PP_4363 ← | two‑component system sensor histidine kinase/response regulator |
| RA | 5,067,659 | C→A | 26.6% | A15E (GCG→GAG) | PP_4460 → | LysR family transcriptional regulator |
| RA | 5,079,416 | C→A | 21.6% | D49Y (GAT→TAT) | PP_5692 ← | hypothetical protein |
| RA | 5,185,239 | C→A | 12.9% | P63Q (CCG→CAG) | PP_4558 → | GNAT family acetyltransferase |
| RA | 5,197,098 | C→A | 22.2% | R186S (CGC→AGC) | PP_4572 → | hypothetical protein |
| RA | 5,225,704 | G→T | 12.1% | F9L (TTC→TTA) | moaB‑II ← | molybdenum cofactor biosynthesis protein B |
| RA | 5,232,298 | A→G | 11.1% | N586N (AAT→AAC) | PP_4606 ← | ferric siderophore receptor |
| RA | 5,237,539 | C→A | 12.9% | A52S (GCC→TCC) | PP_4610 ← | PepSY‑associated TM helix domain‑containing protein |
| RA | 5,328,681 | G→C | 100% | M106I (ATG→ATC) | PP_4684 → | kinase‑like domain‑containing protein |
| RA | 5,385,724 | G→A | 14.8% | S10N (AGC→AAC) | bamE → | outer membrane protein assembly factor BamE |
| RA | 5,432,753 | G→T | 13.7% | P116Q (CCA→CAA) | rhlE‑I ← | ATP‑dependent RNA helicase |
| RA | 5,514,893 | A→C | 46.2% | Q32P (CAG→CCG) | urtB → | urea ABC transporter permease |
| RA | 5,514,902 | T→G | 45.9% | L35R (CTG→CGG) | urtB → | urea ABC transporter permease |
| RA | 5,514,905 | T→G | 43.4% | L36R (CTC→CGC) | urtB → | urea ABC transporter permease |
| RA | 5,675,733 | C→A | 11.4% | P80T (CCG→ACG) | PP_4978 → | hypothetical protein |
| RA | 5,718,651 | C→T | 5.2% | R365R (CGC→CGT) | ubiB → | 2‑octaprenylphenol hydroxylase |
| RA | 5,787,235 | C→A | 19.1% | I235I (ATC→ATA) | kefA → | intermediate mechanosensitive channel protein |
| RA | 5,791,818 | C→A | 16.0% | P76T (CCC→ACC) | trxC → | thioredoxin |
| RA | 5,842,339 | G→T | 13.3% | A45A (GCG→GCT) | PP_5116 → | hypothetical protein |
| RA | 5,922,847 | G→T | 6.9% | Q300H (CAG→CAT) | ygiF → | thiamine triphosphatase |
| RA | 5,934,687 | G→T | 13.3% | P236T (CCG→ACG) | visC ← | ubiquinone biosynthesis oxidoreductase |
| RA | 5,935,529 | C→T | 10.5% | R117H (CGC→CAC) | PP_5198 ← | hypothetical protein |
| RA | 5,993,814 | G→A | 41.9% | intergenic (+103/‑443) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 6,005,412 | C→A | 18.2% | A314A (GCC→GCA) | PP_5256 → | cyclic nucleotide‑binding protein |
| RA | 6,038,094 | C→A | 15.4% | R155L (CGA→CTA) | PP_5284 ← | hypothetical protein |
| RA | 6,075,201 | T→G | 18.9% | N150T (AAC→ACC) | PP_5324 ← | two‑component system response regulator |
| RA | 6,110,515 | C→G | 10.2% | A317P (GCG→CCG) | PP_5355 ← | sodium/proton antiporter |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 91783 | 91858 | 76 | 2 [1] | [1] 2 | trpA | tryptophan synthase subunit alpha |
| * | * | ÷ | NC_002947 | 97582 | 97607 | 26 | 3 [1] | [1] 3 | [PP_0091] | [PP_0091] |
| * | * | ÷ | NC_002947 | 171364–172959 | 176295–172990 | 32–4932 | 6 [1] | [1] 3 | PP_16SA–[PP_5SA] | PP_16SA,PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947 | 176675–178389 | 181690–178420 | 32–5016 | 2 [0] | [1] 3 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | NC_002947 | 220549 | 220628 | 80 | 2 [1] | [1] 2 | PP_0168/PP_5431 | putative surface adhesion protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 235331 | 235352 | 22 | 2 [0] | [1] 2 | PP_0183/argH | glutathione S‑transferase/argininosuccinate lyase |
| * | * | ÷ | NC_002947 | 284571 | 284597 | 27 | 2 [0] | [1] 2 | betT‑II/atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| * | * | ÷ | NC_002947 | 353099 | 353117 | 19 | 3 [1] | [0] 2 | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| * | * | ÷ | NC_002947 | 478322 | 478323 | 2 | 3 [0] | [0] 2 | PP_0393/cca | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase |
| * | * | ÷ | NC_002947 | 499236 | 499236 | 1 | 3 [0] | [0] 2 | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| * | * | ÷ | NC_002947 | 524143 | 524191 | 49 | 3 [1] | [1] 2 | tyrS/PP_16SC | tyrosine‑‑tRNA ligase/16S ribosomal RNA |
| * | * | ÷ | NC_002947 | 614277 | 614339 | 63 | 2 [1] | [1] 2 | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
| * | * | ÷ | NC_002947 | 681227 | 681327 | 101 | 2 [1] | [1] 3 | [PP_0583] | [PP_0583] |
| * | * | ÷ | NC_002947 | 796846 | 796860 | 15 | 2 [1] | [1] 2 | PP_0681/PP_0682 | hypothetical protein/inner membrane protein |
| * | * | ÷ | NC_002947 | 915107 | 915160 | 54 | 3 [1] | [0] 2 | fruA/PP_0796 | PTS fructose transporter subunit IIBC/hypothetical protein |
| * | * | ÷ | NC_002947 | 955072 | 955162 | 91 | 2 [1] | [1] 2 | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
| * | * | ÷ | NC_002947 | 1118750 | 1118814 | 65 | 2 [1] | [1] 2 | [hupN]–[rlmF] | [hupN],[rlmF] |
| * | * | ÷ | NC_002947 | 1131563 | 1131581 | 19 | 2 [1] | [0] 2 | tdcG‑II/gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| * | * | ÷ | NC_002947 | 1263352 | 1263371 | 20 | 3 [1] | [1] 2 | PP_1102 | hypothetical protein |
| * | * | ÷ | NC_002947 | 1316678 | 1316733 | 56 | 3 [1] | [1] 3 | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| * | * | ÷ | NC_002947 | 1363732 | 1363770 | 39 | 2 [1] | [0] 3 | PP_1183 | siderophore biosynthesis protein |
| * | * | ÷ | NC_002947 | 1388205 | 1388218 | 14 | 2 [1] | [1] 2 | PP_1204 | lipoprotein |
| * | * | ÷ | NC_002947 | 1448046 | 1448140 | 95 | 4 [1] | [1] 2 | ghrB/PP_1262 | 2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 1504434 | 1504440 | 7 | 3 [1] | [0] 3 | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| * | * | ÷ | NC_002947 | 1536782 | 1536791 | 10 | 2 [1] | [0] 5 | PP_1344 | hypothetical protein |
| * | * | ÷ | NC_002947 | 1549472 | 1549485 | 14 | 2 [1] | [0] 2 | mdfA/ampG | multidrug MFS transporter/muropeptide permease AmpG |
| * | * | ÷ | NC_002947 | 1597568 | 1597606 | 39 | 2 [1] | [0] 2 | PP_1397 | hypothetical protein |
| * | * | ÷ | NC_002947 | 1709616 | 1709643 | 28 | 2 [1] | [1] 2 | [PP_1499] | [PP_1499] |
| * | * | ÷ | NC_002947 | 1926515 | 1926566 | 52 | 2 [1] | [1] 4 | [PP_1720] | [PP_1720] |
| * | * | ÷ | NC_002947 | 1935375 | 1935451 | 77 | 2 [1] | [1] 2 | [apeB] | [apeB] |
| * | * | ÷ | NC_002947 | 2043245 | 2043329 | 85 | 3 [0] | [1] 2 | [rffE] | [rffE] |
| * | * | ÷ | NC_002947 | 2104930 | 2104996 | 67 | 4 [1] | [1] 4 | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| * | * | ÷ | NC_002947 | 2246278 | 2246365 | 88 | 2 [1] | [1] 2 | gltX/PP_t25 | glutamate‑‑tRNA ligase/tRNA‑Ala |
| * | * | ÷ | NC_002947 | 2434918 | 2434918 | 1 | 3 [0] | [0] 2 | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase |
| * | * | ÷ | NC_002947 | 2479142 | 2479145 | 4 | 6 [1] | [0] 2 | PP_2167/tal | PhoD‑like phosphatase/transaldolase |
| * | * | ÷ | NC_002947 | 3058165 | 3058238 | 74 | 2 [1] | [0] 3 | [PP_2664]–[agmR] | [PP_2664],[agmR] |
| * | * | ÷ | NC_002947 | 3781341 | 3781406 | 66 | 2 [1] | [0] 3 | PP_3338/PP_3339 | cytochrome bd‑type quinol oxidase/hypothetical protein |
| * | * | ÷ | NC_002947 | 3850716 | 3850721 | 6 | 2 [0] | [1] 2 | PP_3394/PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 4175126 | 4175201 | 76 | 2 [1] | [0] 3 | katG/PP_3669 | catalase‑peroxidase/LysR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 4206677 | 4206704 | 28 | 2 [1] | [0] 2 | PP_3691 | DNA helicase‑related protein |
| * | * | ÷ | NC_002947 | 4343463 | 4343496 | 34 | 2 [1] | [0] 2 | PP_3812/PP_5632 | lipase/allo‑isoleucine metabolism protein |
| * | * | ÷ | NC_002947 | 4349312 | 4349323 | 12 | 2 [1] | [0] 2 | PP_3817/PP_3818 | polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein |
| * | * | ÷ | NC_002947 | 4358176 | 4358191 | 16 | 2 [0] | [0] 3 | yrpB | 2‑nitropropane dioxygenase |
| * | * | ÷ | NC_002947 | 4472544 | 4472599 | 56 | 2 [1] | [1] 2 | nhaA‑II | Na(+)/H(+) antiporter NhaA |
| * | * | ÷ | NC_002947 | 4535003 | 4535044 | 42 | 2 [1] | [1] 2 | PP_4018/topB | acetyltransferase/DNA topoisomerase III |
| * | * | ÷ | NC_002947 | 4588515 | 4588563 | 49 | 2 [1] | [1] 3 | treSB/glgE | bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase |
| * | * | ÷ | NC_002947 | 4710329 | 4710397 | 69 | 2 [1] | [1] 3 | kdpF/PP_4162 | potassium‑transporting ATPase subunit F/membrane protein |
| * | * | ÷ | NC_002947 | 4745820 | 4745860 | 41 | 3 [1] | [1] 2 | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | * | ÷ | NC_002947 | 4813174 | 4813184 | 11 | 31 [0] | [1] 2 | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | * | ÷ | NC_002947 | 4844282 | 4844324 | 43 | 2 [1] | [1] 2 | ccoP‑I/PP_4254 | cbb3‑type cytochrome c oxidase subunit/hypothetical protein |
| * | * | ÷ | NC_002947 | 4847893 | 4847895 | 3 | 3 [0] | [0] 2 | ccoP‑II/PP_4259 | cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein |
| * | * | ÷ | NC_002947 | 4850162 | 4850192 | 31 | 3 [1] | [1] 3 | PP_4260/PP_4261 | hypothetical protein/cation‑transporting P‑type ATPase |
| * | * | ÷ | NC_002947 | 4857455 | 4857471 | 17 | 2 [1] | [1] 4 | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator |
| * | * | ÷ | NC_002947 | 4894552 | 4894631 | 80 | 3 [1] | [1] 2 | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase |
| * | * | ÷ | NC_002947 | 5037514 | 5037530 | 17 | 3 [0] | [1] 2 | PP_4435 | hypothetical protein |
| * | * | ÷ | NC_002947 | 5178245 | 5178256 | 12 | 2 [1] | [1] 2 | fadD‑I/fadD‑II | long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase |
| * | * | ÷ | NC_002947 | 5197743 | 5197766 | 24 | 2 [1] | [1] 3 | PP_4572/PP_4573 | hypothetical protein/AAA family ATPase |
| * | * | ÷ | NC_002947 | 5204651 | 5204669 | 19 | 2 [1] | [1] 2 | PP_4579/PP_4580 | LysR family transcriptional regulator/hypothetical protein |
| * | * | ÷ | NC_002947 | 5206604 | 5206617 | 14 | 3 [1] | [1] 2 | PP_4582/PP_4583 | membrane protein/putative Peptidase |
| * | * | ÷ | NC_002947 | 5261813 | 5261882 | 70 | 2 [1] | [1] 3 | [PP_5703] | [PP_5703] |
| * | * | ÷ | NC_002947 | 5349466 | 5349491 | 26 | 3 [1] | [1] 2 | pgi‑II/acsA‑II | glucose 6‑phosphate isomerase/acetyl‑CoA synthetase |
| * | * | ÷ | NC_002947 | 5490152 | 5490181 | 30 | 2 [0] | [1] 3 | purH/purD | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase |
| * | * | ÷ | NC_002947 | 5542032 | 5542074 | 43 | 2 [1] | [1] 3 | nadE/PP_4870 | NH(3)‑dependent NAD(+) synthetase/azurin |
| * | * | ÷ | NC_002947 | 5543542 | 5543595 | 54 | 2 [1] | [0] 2 | PP_4871/PP_4872 | lysine decarboxylase family protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 5657964 | 5657986 | 23 | 3 [1] | [1] 4 | PP_4961/PP_4962 | lipoprotein/hypothetical protein |
| * | * | ÷ | NC_002947 | 5660635 | 5660644 | 10 | 2 [0] | [1] 2 | epd/tktA | D‑erythrose 4‑phosphate dehydrogenase/transketolase A |
| * | * | ÷ | NC_002947 | 5686438 | 5686480 | 43 | 3 [0] | [1] 3 | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| * | * | ÷ | NC_002947 | 5745458 | 5745499 | 42 | 2 [0] | [1] 2 | hutF/PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
| * | * | ÷ | NC_002947 | 5908140 | 5908173 | 34 | 2 [1] | [1] 2 | PP_5175/PP_5176 | HlyD family secretion protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 5989447 | 5989453 | 7 | 2 [0] | [1] 3 | PP_5242/ycaC‑II | GAF domain‑containing sensor histidine kinase/putative hydrolase |
| * | * | ÷ | NC_002947 | 6002182 | 6002212 | 31 | 2 [1] | [1] 2 | PP_5252/PP_5253 | hypothetical protein/arylesterase |
| * | * | ÷ | NC_002947 | 6011580 | 6011584 | 5 | 6 [0] | [1] 4 | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 6014146 | 6014168 | 23 | 5 [1] | [1] 4 | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| * | * | ÷ | NC_002947 | 6032926 | 6032949 | 24 | 2 [1] | [0] 2 | PP_5277/kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase |
| * | * | ÷ | NC_002947 | 6082872 | 6082898 | 27 | 2 [1] | [1] 5 | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter |
| * | * | ÷ | NC_002947 | 6173380 | 6173404 | 25 | 2 [1] | [1] 2 | PP_5407 | TnsD‑like transposition protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1015841 = | 0 (0.000) | 15 (0.630) | 13/244 | NT | 100% | intergenic (‑68/‑700) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | 4541196 = | NA (NA) | intergenic (+730/‑85) | PP_4022/PP_4024 | hypothetical protein/transposase | |||||
| * | ? | NC_002947 | = 1015848 | 0 (0.000) | 16 (0.670) | 13/244 | NT | 100% | intergenic (‑75/‑693) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | = 4543236 | NA (NA) | intergenic (+45/‑275) | PP_4025/PP_4027 | transposase/hypothetical protein | |||||
| * | ? | NC_002947 | 1444956 = | NA (NA) | 17 (0.740) | 11/234 | NT | 100% | intergenic (‑331/‑328) | yveA/PP_1260 | aspartate‑proton symporter/transposase |
| ? | NC_002947 | = 1849442 | 0 (0.000) | coding (343/2754 nt) | gacS | sensor protein GacS | |||||
| * | ? | NC_002947 | = 1446649 | NA (NA) | 11 (0.470) | 10/238 | NT | 100% | intergenic (+37/+395) | PP_1260/ghrB | transposase/2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase |
| ? | NC_002947 | 1849440 = | 0 (0.000) | coding (345/2754 nt) | gacS | sensor protein GacS | |||||
| * | ? | NC_002947 | 3976787 = | NA (NA) | 20 (0.980) | 14/208 | NT | 100% | intergenic (+177/‑203) | PP_3501/PP_3502 | transposase/transposase |
| ? | NC_002947 | 4578248 = | 0 (0.000) | intergenic (+63/‑74) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme | |||||
| * | ? | NC_002947 | = 4578249 | 0 (0.000) | 18 (0.800) | 15/230 | NT | 100% | intergenic (+64/‑73) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
| ? | NC_002947 | = 5763126 | NA (NA) | intergenic (+145/+373) | PP_5050/PP_5051 | transposase/hypothetical protein | |||||
| * | ? | NC_002947 | = 4813173 | 0 (0.000) | 25 (1.160) | 7/220 | NT | 40.7% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | 5993770 = | 73 (3.380) | intergenic (+59/‑487) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | 5761370 = | 16 (0.670) | 5 (0.280) | 5/180 | NT | 27.2% | intergenic (+42/‑646) | glnG/PP_5050 | two‑component system DNA‑binding response regulator GlnL/GlnG/transposase |
| ? | NC_002947 | 5763170 = | 15 (0.850) | intergenic (+189/+329) | PP_5050/PP_5051 | transposase/hypothetical protein | |||||
| * | ? | NC_002947 | = 5993762 | 76 (3.180) | 4 (0.180) | 4/228 | NT | 6.3% | intergenic (+51/‑495) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947 | 5993984 = | 47 (2.100) | intergenic (+273/‑273) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||