mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 188,837 | C→T | R316C (CGC→TGC) | PP_0165 → | GGDEF domain‑containing protein |
| RA | 233,545 | C→T | G548G (GGC→GGT) | PP_0180 → | cytochrome c family protein |
| RA | 476,133 | A→T | Q141L (CAG→CTG) | tsaD → | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
| RA | 1,011,323 | +T | intergenic (‑258/+192) | PP_0871 ← / ← SBRG_Ecoli_galM | glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM |
| RA | 1,098,137 | C→A | G173W (GGG→TGG) | PP_0949 ← | ATP‑binding protein |
| RA | 1,099,817 | T→G | T400P (ACC→CCC) | rpoN ← | RNA polymerase sigma‑54 factor |
| RA | 1,160,716 | C→G | L307V (CTG→GTG) | PP_1013 → | sensor histidine kinase |
| RA | 1,163,733 | A→G | N304S (AAC→AGC) | gtsA → | mannose/glucose ABC transporter substrate‑binding protein |
| MC JC | 1,515,811 | (33-bp)2→1 | pseudogene (715‑747/1851 nt) | PP_1325 ← | putative lipoprotein |
| RA | 1,856,513 | A→G | D203G (GAT→GGT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,018,201 | G→A | intergenic (+144/‑36) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| RA | 4,746,222 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,224 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,226 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,229 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,232 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,234 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,248 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,250 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,253 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1015841 = | 39 (0.090) | 471 (1.040) | 179/286 | 0.3 | 92.3% | intergenic (‑68/‑700) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | 4541196 = | NA (NA) | intergenic (+730/‑85) | PP_4022/PP_4024 | hypothetical protein/transposase | |||||
| * | ? | NC_002947 | = 1015848 | 31 (0.070) | 493 (1.090) | 181/286 | 0.2 | 94.1% | intergenic (‑75/‑693) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | = 4543236 | NA (NA) | intergenic (+45/‑275) | PP_4025/PP_4027 | transposase/hypothetical protein | |||||
| * | ? | NC_002947 | 1444956 = | NA (NA) | 473 (1.080) | 182/276 | 0.1 | 100% | intergenic (‑331/‑328) | yveA/PP_1260 | aspartate‑proton symporter/transposase |
| ? | NC_002947 | = 1849442 | 0 (0.000) | coding (343/2754 nt) | gacS | sensor protein GacS | |||||
| * | ? | NC_002947 | = 1446649 | NA (NA) | 433 (0.980) | 159/280 | 0.7 | 100% | intergenic (+37/+395) | PP_1260/ghrB | transposase/2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase |
| ? | NC_002947 | 1849440 = | 0 (0.000) | coding (345/2754 nt) | gacS | sensor protein GacS | |||||
| * | ? | NC_002947 | 1742978 = | 411 (0.910) | 208 (0.520) | 122/252 | 1.9 | 35.0% | coding (32/348 nt) | yffB | glutathione‑dependent thiol reductase |
| ? | NC_002947 | = 1782392 | 411 (1.030) | intergenic (+135/+157) | PP_5476/PP_1585 | hypothetical protein/antidote protein | |||||
| * | ? | NC_002947 | 3976787 = | NA (NA) | 440 (1.110) | 162/250 | 0.2 | 100% | intergenic (+177/‑203) | PP_3501/PP_3502 | transposase/transposase |
| ? | NC_002947 | 4578248 = | 0 (0.000) | intergenic (+63/‑74) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme | |||||
| * | ? | NC_002947 | = 4578249 | 0 (0.000) | 550 (1.280) | 172/272 | 0.2 | 100% | intergenic (+64/‑73) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
| ? | NC_002947 | = 5763126 | NA (NA) | intergenic (+145/+373) | PP_5050/PP_5051 | transposase/hypothetical protein | |||||